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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061606 ID=TCONS_00061606|Name=TCONS_00061606|organism=Clytia hemisphaerica|type=transcript|length=1794bp
CTTTCCGATAACTGCTACATATGGCAAGAGCTAATTAATATAAATAACAC
GGTGACCTTTCTGTGGGTAAAAGATAATTGAAAGCTGTGTTCATCGGCCC
AACTTGAATGTCTGCAATTTCTTGACTATATCGACCAGTGTTCTCTATTG
TTATATTACTTTGGTGCGTTGAACTTCCAACAAGAAGTAATGGCGGAACA
ACTTCTTTCTGTAACATCACTGAAGAATGGGTACCACGTATCACCAGTGA
GGCAGTTTACATCGTCCCTGCCACATTGAGTGTATGTTTCTTTATCCTAT
TCATTATTATTGCAATAACAAAAGGATACTACAAGAAGAGCTTTCTTAAA
GATGCTTTCAGTTGGAAATGCAACTGTGGTAAAAAGAAATGGTTGAGTCA
AGAGGAGGGCCCCAAAACAGAGGTGGTTGTAGGCTGTGACAAGTGTTGTG
GTACCACGTGTTGTTGCACGTGCTTAACAGTAGATACCGGAGTTCAATTC
ACTATTCTACTTTCACATGTAACTATCATTTTCGATATCTATGATGTTTA
TACGGATTGTGAATATCATTACAAGTATGAAAATTTCGGCCAAGTTCACC
GAGGGATTTATCGAAATGGTGCAGTCTCTATCGGTATTTTGGTATTCGCT
ATTTTTGGTATGGTCAAAGTAATTGTTAcagctttttattttattattct
tCGAAACTTGCCGGGTGATTACGGGGATCATCCGGATAATGAAAGACGTC
tcatcaaatatttcaaaaaagttgatAAAGCGATAGTTTTTATTGTAGAA
GATTGTGCTGAAAACTTCCTGGGTTActtttatattgaaaagtaTCTTGT
TGGTGACGAGGCTTTGTCGAGTACAATGATTCTAAAGATATTGATCAATT
CCATCAGGTATGGCATTAAATCTTGCAAAGGGCTGATGGAATTTTATAAA
GGGTGCAAGgctttgaagaagaagaaaaaagacttGGAAAAAGAGGAACA
GGATGGGTCCAAATACCTGGAACCAAAAAAGCAAAGTCTACTGCGTGTGG
TACTCAGACTTTTTAATTCACCTTTTCCAATGCTTTTCATATGCTTTGGC
AACTTTCTTCGTTTATTTGGTGCGTTTTACCAAAACCATTATGGTAAACT
GGATGACCACTGTGTAGCTGTCGTCAACGGTCGTCTGATACAGACACCGT
TCACTAGTTACCCTGGAAACTGTATGAGGATATGGGAATATATTTTTATG
GTCTGCAATTTCGTTCCGTTGCTGTTTTACATTGTTGGTTTAGCATTGTT
CATACGTTACATACGTAATTCAGACAAAGCAGAATTCGAGAAATTTGAGA
TGCaaagaccgcgtcaagaattttggaggtctggtaacccagacCTCGTT
TTGGGGGATTCCAAAACCGATTAAGTGATGTTTAAAAAGCATTACATGTT
ACATTTAGAGCAGGCTAAAAATCTCCTTAGTTTGGTCttttaagagaaaa
aaagatagaggtagggaaagtgggtttagATTTGTAGGACCATATAATCT
ATACCAAAGCCACTTCATTTGATTTGGTTGAAGCCAATTTTTGTAGCCTT
TTTTTGTCCTTTGTAACTGGAATATTGTATCTTATCCATTGCTGTTTGAG
ATATTAAAGTCCTTTCTGTATTGTCAAACAACTTTTATATTTAgccaaaa
tttatattttttatttatccTGTAACTTAGTTTGATATATAACCATTATT
CCAGATCTGTATATTTTGTGAATCAAAACTACTTCTCTTGATTT Run BLAST on NCBI transcript from alignment at scaffold_36:972761..979637+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061606 ID=TCONS_00061606|Name=TCONS_00061606|organism=Clytia hemisphaerica|type=transcript|length=6877bp|location=Sequence derived from alignment at scaffold_36:972761..979637+ (Clytia hemisphaerica)
CTTTCCGATAACTGCTACATATGGCAAGAGCTAATTAATATAAATAACAC
GGTGACCTTTCTGTGGGTAAAAGATAATTGAAAGCTGTGTTCATCGGCCC
AACTTGAATGTCTGCAATTTCTTGACTATATCGACCAGTGTTCTCTATTG
TTATATTACTGTAAGTTTGTTTGTGCAACCTTTGGGTTATCATAAATAGG
Atgtatttttactttatttttgtgataaattttagttataaagaaagaaa
aggctCCTCAGGAAAAATGCCTTCTAGAAAATTTGCCCCCACCCTCGGAA
ATTTGCCTCTCATATTTCAAAACGCTAAAAGCTCTGAAGATCAAGCCAAT
TACTTTCAACTTTCGGGAGGTTTGGATTACACGCAATTCTACTTGATCAA
GTAACAGATTTTGTAGAAGAGGTCAATATACCCAGCCCTCATTTTGGGGA
AATTTTCTGGGACAATGGGCTTAGCTGTAATTTTGTTCAGGTTGACACGA
TAGATAGACAATAAATAAAGCCGTTTTTATAAGTAAATCTTGTCCCAATT
TCTTAAAgggattttattttcattccccCTGAGccttattaaattttgat
aatattttcagctgtcgaAGAgaaaggccccttattttgctctaaatagc
ctgatcaaggatttattatacccTGGATATAGATTACctagtaacagatt
tttgccgatttcttgtgtactagctttgtccgcagtaatgatattattgt
tcaatgatttttgaagcatttttattgcatttcttatctaaaatcactca
tccaattcccaaaagagaataaaaacaatcctgtgagagtcagattcctC
CACTTAATTGCTGATTATAAGTCGTTATATGACGTTTTAAGCtatgagaa
agatgcaaaagacgtgttgtgtataagaaatttaatgttgacaccggaaa
ttttcaaacttcaacctcaaaaaaaccaccaaaggattttcataccacag
tggagccaagacactcaNacttcaacctcaaaaaaaccaccttacCACCA
CGTGTCTTtaatgtatgttaatttcagctcttctgggcacagtcttggaa
agatatttccaattgaaaatttcatgtcactataagcattttgtatgaat
ttcttgtctaatgatttttttctcacattagatttcacaaatataTCCAG
CTTAGAAAGCTAGCCTTActtattcaaactttttttctgcaaatgtacaa
aaagaaagagctagagaactttttgaaaataagactgataaacattttta
aaaatcagacatctttgagccgccatgacagttgtcctttgcggacaaag
ctagaacatcaattgttttctgaaacaatgaaaataacaatgatcgctct
ccacaTCGTTTTacgagtcgtttatccagtgtatgaTAAATCTTTCGCCT
GATATTAGCCTATATTTAACCTTATTggtgggttttcagaagtacaattt
cccccggcaattaggttaccccgtttattaaatttaaaacattttccaac
ACCTGTGCACTAAAAAGAGCACAAAAATACCTTTCTATTAGTAGCAAAAC
CAATGTCTAACTCTCAAGATATGCTAgttcgaaattttgaatttcaaaaa
aaaaagttggatattttcaattttttcctaaaaattttacacttAAGGTG
AAAGTcacatgaaattgaaaaagtgcattttttacgggtttttttaacaa
cttttgatctactgaatattttgaaatgaaatttttctcaattgTAAAGT
AACTATTgaggaaatcagaaaaaatagcTAAGACGAGGGTAAAATCAATC
TGGGGGTGAAGTACTATAAAAACACTGTGGCAAGATCTATGACTTGtgat
aaaaaactattttttggaGGTGATCAGTATTTTAGTTGTTTGCAACTTCC
GTaggtattatttttaaattttgttgtgaTACCGAGAAAaggaaattata
aaataaaaaaatttaattctaAAAATCTTAGTTATGGAAGTTGCAACACA
TTGTAAGATGTAACTTTGCTAAAAATTTTAGGATCGTAGCTTTTTCCTGT
CCTGAGAAAGCGTTGCCAAGGTGTGAAAAAAAACCCTGAAAcctatttta
ataaaaaaatccgTATCCGTAAAGAAACTCAGAAGTATATATATCTCTGT
AATAAATggaccgttttacaaaattctttctgTGTCTGATTGAAATGGAA
TAAAGTagggagggggagggggtactagggttaaGAGATGacgggggggg
gtgccgcccgactttcaagtcttggacccttaccgggactgaaaagtaga
aaaaagggaaaattttgtgaattttacgacccttattgggacaaatttga
ccaattttgaccaaattttgatctttccggtggtaaaaaaattaaatttt
cctatttctccaaCCCTTTGTGGagtgaagtttgattttttattttttcc
gaCGCTTNagaaaaaagggaaaatttcgtcaattttacgacccttattgg
gacaaattttaccaattttgaccaaattttgatctttccggtggtaaaaa
attgaactttcGTATTTCTCCGACCCTTTGTGGGACTGAAgttcgatttt
ttattttttctgacccttagtgggactaagGAATCCAAAATGGCTACCCt
tcttaagggcggcacataccgtactctccatttgcctaagtaccccccgg
aGTACTttattgccaccggaggaagcctaaagcttctgaggatggcattc
atagcttcacgcataaggaaatTGGGCAAATATCTCATAATTTTgggcgc
gtttttcagtattttagttccgcttaacggtagcattcttatcttacggt
ctctctattgttttatcatcatcaaaaagacttttccggagttattttga
tctgattactcgttttgaaatgtcagtttgtcttttttttatccctggag
agttaaatgaatctaaggaaattccctttgctgggaaattccctttttat
accacaagtagttattaagcgctcttcatatacgctttttataggaaaaa
ccagtaagtcatatgattctggctggactgctcttaaatttatatgagtt
tttcagccttaaatgtcaatattaattaaaatggaaacatgtacttctca
gtaaatTCTGAAATCTAAgtttcagattcttcttaatttgttcttaggtt
ttggccaaatttcagcctcgtattcttatgaaattgttcttataaaaaac
gtgtaagacaaggcacggatgtcactctaagcagactgtaaatcactccc
ttgaaacatttgttagcatttgaaagaattttgtctcagatgagaggtca
ctcttaacaaaaattactgtagggctaagatcattccttttgaacgcaaa
ttcaactctatgtgttcgttttgctgcggtggcaccttaatgaaagttat
ggctagtaatAAGATAGCACAGACACatttgagaataaactctattgact
TCCattagtttccaattccaaagatgacCCCTCTCCCCCCACAGGACCCT
AttttgtcatttcggccgaaatgaggtttgacggttgcCTATTTTTAGAG
GGAGCGCACTGGAACGGAGAGCagtgaaatttggcacagacacccttgag
aataaactttattgacttccaatagtttccagatgaccgctctcccccac
ggaccctattttttcatttcggccgaaatgaggtttgacggttgccaatt
tttagagggagtgcactgcgacggagagcggtgaaatttggcacagacac
CCTTGGGAGTAAACTCTATtgacttccaatagtttccaattccaaagatg
accgctctcccccacaggaccCCATTTTGTCATAttggccgaaatgaggt
ttgacggttgccaatttttagagggagcgcACTGCAACGGAGAGCggtga
aatttggcacagacacccttgagaataaactctattgactTCCAATAGTT
TTCAATTCCAAAGATGACCCCTCTCCCCCACAGGACCCCAttttgtcatt
tcggccgaaataaGGTTTGACCCGttgccaatttttagagggagcgcACA
GCGACGGAGATCggtgaaatttggcacataCACCCTTGggaataaactct
attgactTTCATTAGTTTCCAATCCTAAAATTATAGGTATATACTTTTAA
AAGTAATCACAACATCACAGAAActttaaaaaccaaatttgagaatatca
aacgaatatcaaacgaatatcaaacgtcaaacgtagaatatcaaaccaac
cTCAACTTAATCACAGTCGGCtagtccactttcggcagccatctttttct
aaatactttcggttaatcaaatcacagtattatcggaatcagataatccg
tttttattaaatcggaatagatcatcggattagataaacaaacaaaaaag
tcttGACCGTCTGaggagagagaatttaaggctcgtAGGCCGAAgcaatc
agaaaaatttaaacccaaATTTGAATTATAGCTAAAACATGTccgaaata
gagttttttttattaaaaaatgccCTTTTTTGGTCCACTTTTTGGAAGGC
CCTCTGCAGTAAAAGTTGGCTAATTTTTGCTCCAATCAGCTTCACGAAAA
TTCAATAACTGTTTTTCTATAATTGCTACAGAGGTCAGTGACCCCTCGTT
TAAACGAAAAAAGacagagctttccaaaaaactaagtttgatgggggggg
ggggttgaaagtttgaaaattgggctaaagtGCCTATtaaagagcaaaaa
atgtcatcAGTCAATTCAACATTTCCAAATTAAAGCAGCTTTCATAGTCA
AAGACACTGCTGACAGCGTCCAAAAtttgtatgttttaaaaaaattatca
cttCCTTGGTTACGATCTTTGATTATGTTTAGAGCAGCCAAAGAAATTAG
TCCCTAGCAAcgggtatgatttttcgttgCTAGGGAAAATACTTGAGACT
GGGGTCTAGAAAAAATCTTATACCTAAAATGCTACacccttaaaattttc
agtgtATGTTCAGAAAGGGTTTAGGGTCATGAAACGCACAAAATCCCGAA
AGCGACAATTTTTTCACCATGTCTCAAAAGTTAATCTGAAGTATTTCATT
ATGcacatttttaaataatttattcTATTTCTTTTGATTACAGTTGGTGC
GTTGAACTTCCAACAAGAAGTAATGGCGGAACAACTTCTTTCTGTAACAT
CACTGAAGAATGGGTACCACGTATCACCAGTGAGGCAGTTTACATCGTCC
CTGCCACATTGAGTGTATGTTTCTTTATCCTATTCATTATTATTGCAATA
ACAAAAGGATACTACAAGAAGAGCTTTCTTAAAGATGCTTTCAGTTGGAA
ATGCAACTGTGGTAAAAAGAAATGGTTGAGTCAAGAGGAGGGCCCCAAAA
CAGAGGTGGTTGTAGGCTGTGACAAGTGTTGTGGTACCACGTGTTGTTGC
ACGTGCTTAACAGTAGATACCGGAGTTCAATTCACTATTCTACTTTCACA
TGTAACTATCATTTTCGATATCTATGATGTTTATACGGATTGTGAATATC
ATTACAAGTATGAAAATTTCGGCCAAGTTCACCGAGGGATTTATCGAAAT
GGTGCAGTCTCTATCGGTATTTTGGTATTCGCTATTTTTGGTATGGTCAA
AGTAATTGTTAcagctttttattttattattcttCGAAACTTGCCGGGTG
ATTACGGGGATCATCCGGATAATGAAAGACGTCtcatcaaatatttcaaa
aaagttgatAAAGCGATAGTTTTTATTGTAGAAGATTGTGCTGAAAACTT
CCTGGGTTActtttatattgaaaagtaTCTTGTTGGTGACGAGGCTTTGT
CGAGTACAATGATTCTAAAGATATTGATCAATTCCATCAGGTATGGCATT
AAATCTTGCAAAGGGCTGATGGAATTTTATAAAGGGTGCAAGgctttgaa
gaagaagaaaaaagacttGGAAAAAGAGGAACAGGATGGGTCCAAATACC
TGGAACCAAAAAAGCAAAGTCTACTGCGTGTGGTACTCAGACTTTTTAAT
TCACCTTTTCCAATGCTTTTCATATGCTTTGGCAACTTTCTTCGTTTATT
TGGTGCGTTTTACCAAAACCATTATGGTAAACTGGATGACCACTGTGTAG
CTGTCGTCAACGGTCGTCTGATACAGACACCGTTCACTAGTTACCCTGGA
AACTGTATGAGGATATGGGAATATATTTTTATGGTCTGCAATTTCGTTCC
GTTGCTGTTTTACATTGTTGGTTTAGCATTGTTCATACGTTACATACGTA
ATTCAGACAAAGCAGAATTCGAGAAATTTGAGATGCaaagaccgcgtcaa
gaattttggaggtctggtaacccagacCTCGTTTTGGGGGATTCCAAAAC
CGATTAAGTGATGTTTAAAAAGCATTACATGTTACATTTAGAGCAGGCTA
AAAATCTCCTTAGTTTGGTCttttaagagaaaaaaagatagaggtaggga
aagtgggtttagATTTGTAGGACCATATAATCTATACCAAAGCCACTTCA
TTTGATTTGGTTGAAGCCAATTTTTGTAGCCTTTTTTTGTCCTTTGTAAC
TGGAATATTGTATCTTATCCATTGCTGTTTGAGATATTAAAGTCCTTTCT
GTATTGTCAAACAACTTTTATATTTAgccaaaatttatattttttattta
tccTGTAACTTAGTTTGATATATAACCATTATTCCAGATCTGTATATTTT
GTGAATCAAAACTACTTCTCTTGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061606-exon-scaffold_36-1491911889:972761..972920 | TCONS_00061606-exon-scaffold_36-1491911889:972761..972920 | Clytia hemisphaerica | exon |
| TCONS_00061606-exon-scaffold_36-1510915933:972761..972920 | TCONS_00061606-exon-scaffold_36-1510915933:972761..972920 | Clytia hemisphaerica | exon |
| TCONS_00061606-exon-scaffold_36-1575043694:972761..972920 | TCONS_00061606-exon-scaffold_36-1575043694:972761..972920 | Clytia hemisphaerica | exon |
| TCONS_00061606-exon-scaffold_36-1491911889:978004..979637 | TCONS_00061606-exon-scaffold_36-1491911889:978004..979637 | Clytia hemisphaerica | exon |
| TCONS_00061606-exon-scaffold_36-1510915933:978004..979637 | TCONS_00061606-exon-scaffold_36-1510915933:978004..979637 | Clytia hemisphaerica | exon |
| TCONS_00061606-exon-scaffold_36-1575043694:978004..979637 | TCONS_00061606-exon-scaffold_36-1575043694:978004..979637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:972761..979637 + |
Blast
The following BLAST results are available for this feature:
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