TCONS_00061603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061603
Unique NameTCONS_00061603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061603 ID=TCONS_00061603|Name=TCONS_00061603|organism=Clytia hemisphaerica|type=transcript|length=1500bp
ATCTCAGTACTCTGATAAAGTTTTTAAAGACACTTCTTCCCACGTCCTTA
CTGGAAAGTTCTCTCAACATTTtatccccggtgggaaaattaCTCCACAA
TTTCAGCCCATTCTCATAcccatttgaaaaaaaattccaatccCAAACCA
CCCTCACTAAGATTTttaatttaagaacaatagaatttccccattgagat
tttctACTGCGGGAAAAATTCTCACCGGGGCTGTATGACAAAGGTTTTCT
GTGGCATAAAGCTTAGACAATGCCGGGTGTAAAAATGTTATNAATTCTCA
CCGGGGCTGTATGACAAAGGTTTTCTGTGGCATAAAGCTTAGACAATTCC
GGGTGTAAAAATGTTATAAATCTTAAGTATATTTAGATTTTAGGTTTTAA
ATTCTATTTTCTACATTTTACATTGGATTTTTTTGagtgaaacaaaaatt
tctttgcAACCGAAAAAAACTTCCTATATTCTTGTGGATACGGTTGAATA
TTTGCCGTTTTGTATATCTAATTCCTTCTCTATGGTTGTAGTGACGATCC
AAGTGCAAGCCAGTGCTAATAATCCTTTCACCtatgaagaaaatttgaaa
gctGttGATGCATACTTTTGTAAGGGAAAATCTGGCAATTATCGTCATCC
AAATGGAGCCTGTGATCACTACATTGCCTGCGGTGTTGGAtgtaaaaatg
ctaaaaacagACGATCCTACAAACGTCTTTGTACACAAAACATCATGCCG
TGTCCTGGTGGTCTTTTCTACGATGAGAAAGCTTATGGAGGATATGGAGC
TTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTTCAAGGAGAAGTTT
GCTATGGATCCACTCAAGAGTCATATGGCACTTACACTCATCAATGTACT
GGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTTGGATG
TTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGTCCACACGCCCCAC
CAATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTtcaaatacgtc
aaaaaatcaTACTACGACATTAAACATGACGTTAAATTTCCCGAACCATT
CACTGCTTACGACGCCAATAAATACGGATTCTATTATTTGAACGGATTCC
ATGACAAATCATCCTTCATCTATTTCACTGCAGAACATAATGATTATTAT
ACCTACTTCATCAAAGGAAAGAAATACCGTGTCTATTATGGTGAAGATTT
GTTTGATCAAGGAGTCGGAAACAATGTAGGCAAACATTGCGTTTACGTCT
ACGCATCGTTCTACAAATACTACAAACctaatcaagttatcaaattttaa
gtttaataattgatttactgaaattttttaacaaaaccGATATTTTTTTT
AACCCAAATACTTTCTaaaactttgtatgttttattttgaatcttttaga
tttttttaaaatctttaaaatcttttatatttctattgtcataatacaaa
Run BLAST on NCBI

transcript from alignment at scaffold_36:932612..934881+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061603 ID=TCONS_00061603|Name=TCONS_00061603|organism=Clytia hemisphaerica|type=transcript|length=2270bp|location=Sequence derived from alignment at scaffold_36:932612..934881+ (Clytia hemisphaerica)
ATCTCAGTACTCTGATAAAGTTTTTAAAGACACTTCTTCCCACGTCCTTA
CTGGAAAGTTCTCTCAACATTTtatccccggtgggaaaattaCTCCACAA
TTTCAGCCCATTCTCATAcccatttgaaaaaaaattccaatccCAAACCA
CCCTCACTAAGATTTttaatttaagaacaatagaatttccccattgagat
tttctACTGCGGGAAAAATTCTCACCGGGGCTGTATGACAAAGGTTTTCT
GTGGCATAAAGCTTAGACAATGCCGGGTGTAAAAATGTTATNAATTCTCA
CCGGGGCTGTATGACAAAGGTTTTCTGTGGCATAAAGCTTAGACAATTCC
GGGTGTAAAAATGTTATAAATCTTAAGTATATTTAGATTTTAGGTTTTAA
ATTCTATTTTCTACATTTTACATTGGATTTTTTTGagtgaaacaaaaatt
tctttgcAACCGAAAAAAACTTCCTATATTCTTGTGGATACGGTTGAATA
TTTGCCGTTTTGTATATCTAATTCCTTCTCTATGGTTGTAGTGACGATCC
AAGTGCAAGCCAGTGCTAATAATCCTTTCACCtatgaagaaaatttgaaa
gctGGTAAGTAggaatttatttaatttgaattaAGTGAGGACAACAATGT
TTAAGTTGTAGTCTCAAGGAGAGTCTATGAAGTGTCAATTTGAGTGTTAT
TTGCTTTaatgggatatatttttgggaattaaatttcgcagatGGCTCGA
ACGTAGTAGCGtaggttgaaaatatttgaagatcTTGTGCCTTTTTACAC
CAAATCATGCATCAGTTGtcgaaatacgcattattagcgcttctttgata
acagtaaacattcaaattgTTATTCGGGACTTTCATCAAAACGATTTCGT
GTTTGGGGTCAATTTCACGTAAATAGCCGACGAAGTCGTATACTccttct
tttattttgagttATTGAGAAATTCATCATCACTATAATTCCcttctttt
tatattttagttGATGCATACTTTTGTAAGGGAAAATCTGGCAATTATCG
TCATCCAAATGGAGCCTGTGATCACTACATTGCCTGCGGTGTTGGAtgta
aaaatgctaaaaacagACGATCCTACAAACGTCTTTGTACACAAAACATC
ATGCCGTGTCCTGGTGGTCTTTTCTACGATGAGAAAGCTTATGGAGGATA
TGGAGCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTTCAAGGAG
AAGTTTGCTATGGATCCACTCAAGAGTCATAGTAAGTACTTGTTTCCGTC
ACAACTGGTGGCCATCTTAAAATCATagccaaattttaagaaaataagaa
tatctATGCAGGtttagggaaatatttaatgcCCATCCTTTGCAAGAGAA
CaagaacaaaatgtttttaatgaTGTGATAATACAATATCTAGAAATTCT
GCTATTATTCGCTTATCACTTAATTATCATTCTTTAAGAAGTNTATGTTT
TGTCGACAAGCCTTCCATTGAAACATTATTTTGTATTAACTTGAGGCTTA
TTAATTTCTGAATCTTCAAAAGATTTCGTTTTCACCACCTTGGCGATGGC
ATTCAccagaaataaaagttgataTAAGTTTTGTTATTCTTACAGTGGCA
CTTACACTCATCAATGTACTGGACAAGTCACCTTATTGAAACTCGTCTCC
AAATCTGGAAGTGTTGGATGTTACAAAGGTGTCACGCCTGGTTACTGGGG
TGGATGTCCACACGCCCCACCAATCAACGTCTGGATCACCGAGCACAGAG
GTGACAACTtcaaatacgtcaaaaaatcaTACTACGACATTAAACATGAC
GTTAAATTTCCCGAACCATTCACTGCTTACGACGCCAATAAATACGGATT
CTATTATTTGAACGGATTCCATGACAAATCATCCTTCATCTATTTCACTG
CAGAACATAATGATTATTATACCTACTTCATCAAAGGAAAGAAATACCGT
GTCTATTATGGTGAAGATTTGTTTGATCAAGGAGTCGGAAACAATGTAGG
CAAACATTGCGTTTACGTCTACGCATCGTTCTACAAATACTACAAACcta
atcaagttatcaaattttaagtttaataattgatttactgaaatttttta
acaaaaccGATATTTTTTTTAACCCAAATACTTTCTaaaactttgtatgt
tttattttgaatcttttagatttttttaaaatctttaaaatcttttatat
ttctattgtcataatacaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038643XLOC_038643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061603-exon-scaffold_36-1491911889:932612..933215TCONS_00061603-exon-scaffold_36-1491911889:932612..933215Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1510915933:932612..933215TCONS_00061603-exon-scaffold_36-1510915933:932612..933215Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1575043694:932612..933215TCONS_00061603-exon-scaffold_36-1575043694:932612..933215Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1491911889:933622..933892TCONS_00061603-exon-scaffold_36-1491911889:933622..933892Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1510915933:933622..933892TCONS_00061603-exon-scaffold_36-1510915933:933622..933892Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1575043694:933622..933892TCONS_00061603-exon-scaffold_36-1575043694:933622..933892Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1491911889:934257..934881TCONS_00061603-exon-scaffold_36-1491911889:934257..934881Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1510915933:934257..934881TCONS_00061603-exon-scaffold_36-1510915933:934257..934881Clytia hemisphaericaexon
TCONS_00061603-exon-scaffold_36-1575043694:934257..934881TCONS_00061603-exon-scaffold_36-1575043694:934257..934881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:932612..934881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170726	0.401556	0.0680843	0.0666098	0.38506	0.760699	0.495466	0.579005	0.895755	0.99378	1.44643	1.6164	0.213377	0.856316	17.9469	2.94616	0.337198	0.395827	1.85235	0.735008	0.592003	0.576923	0.0689459	0.224607	0.464658	0.382818	0.195763	0.104462	0.237691	0.0807233
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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