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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061598 ID=TCONS_00061598|Name=TCONS_00061598|organism=Clytia hemisphaerica|type=transcript|length=879bp
GTTGCTTTGGCGACGATCCAAGTGCAAGCTAGTGCTGATAATCCTTTCAC
ATACGAAGACAATTTGAAAGCTGTCGATGCATACTTTTGTAGGGGAAAAT
CTGGCAATTATCGCCATCCAAATGGAGCCTGCGATCACTACATAGCCTGC
GGTGTTGGATGTAAAAATGCTAGAAGCAGACGATCATACAGACACCTTTG
TACACAAAACATCATGCCGTGCCCAGGTGGTCTTTTCTACGATGAGAAAG
CTTATGGAGGATATGGAGCTTGTATTTATAAAGCTGAATCTAACTGTCTT
CAATTCCAAGGAGAAGTTTGCTACGGATCCACTCAAGAGTCATATGGCAC
TTACACTCATCAATGTACTGGACAAGTCACCTTATTGAAACTCGTCTCCA
AATCTGGAAGTGTTGGATGCTACAAAGGTGTCACGCCTGGTTACTGGGGT
GGATGCCCACACGCCCCACCAATCAACGTCTGGATCACCGAGCACAGAGG
TGACAACTTCAAATACGTCAAAAAGTCATACTACGACATTAAACACGACG
TCAAATTTCCCGAACCGTTTACCGCTTACGACGCCAACAAATACGGATTC
TATTATTTGAATGAATTCCATGACAAATCATCCTTCATCTACTTTACTGC
AGGGCATAATGATTATTACACCTACTTTGTCAAAGGAAAGAAATACCGTG
TCTATTATGGTGAAGATTTGTTTGATCAAGGAGTCGGAAACAATGTAGGC
AAACATTGCGTTTACGTCTACGCATCGTTCTACAAATACTACAAAccaaa
tcaagttatcaaattttaatttttatatttgattcactcaatttttttaa
caaaaccgATATTTTCTTTTAACTTAAAT Run BLAST on NCBI transcript from alignment at scaffold_36:926043..928157+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061598 ID=TCONS_00061598|Name=TCONS_00061598|organism=Clytia hemisphaerica|type=transcript|length=2115bp|location=Sequence derived from alignment at scaffold_36:926043..928157+ (Clytia hemisphaerica)
GTTGCTTTGGGTAAGTGCTTTATCAAGCCTTAAACAGAACATCTTTATCT
TTAgtgacaatagaatttctattccttTGAGATTTGCCACTGTGGGAAAA
TTCTCACCGGGGCTGTAAGACAAAGATGCTCTGTGGCATAAAGCTTAGAC
AATGCCGGGAAACGTCAAATGTTAGATAGATGTGGATTTTTAATtctatt
ttttacattttacactGGATTTTTTTGagtgaaacaaaaatttctttgcA
TCCGAAAAAACTTCCTAGATTCTTGTGGATACGGCCGAAATTTTGCCGTT
TTGTATatctaattctttttttatgttaTAGCGACGATCCAAGTGCAAGC
TAGTGCTGATAATCCTTTCACATACGAAGACAATTTGAAAGCTGGTAAGT
AGGAATTCATTTAAAATGGATTGAGCGAGGACAATAACACCTAAGTCTTA
AAGAGAGCATATAAAGTGTCAAAGCTGTGTAGtttgagtgtttttttttt
tgcttaaatgggataaattttcgggaattaaatttcgtggatggtgctca
cagatatctgtaaagcccgaagggctagataggcaactttaagctttctt
cagcaaaaaaaagtgaatatcggaaaaattattgttgctattgttttcca
aaacccgggaagcttctgattggtccatcgctgaaattctattgtataat
gtcacgtgactctggtaggaaatccttccaaagatgagttTCACTCTTTG
ACCAAGGCcgcttatctagcccttcgggctataCTATATCATTGATGGTG
CTACGTATAGACTGAAAATATCTTGATGATTTTGTGCCTTTTAACACTAA
TTATGCATATCGGTTGtcgaaatacgcattattagcgcttctttgataaC
ATTAAACATTCAAATCGTTATTCGACATTTATGGAGTTTTTCTCAAAACG
ATTTCGTGGTTGGGGCTAATTCCGCGTAAATAGCCGAAGAATCCGTATAC
ACCTTCTTTATTTTGAGTTATTGAGAAATTTATCATTACTATAATTTCCT
TCTTTTACATTTTAGTCGATGCATACTTTTGTAGGGGAAAATCTGGCAAT
TATCGCCATCCAAATGGAGCCTGCGATCACTACATAGCCTGCGGTGTTGG
ATGTAAAAATGCTAGAAGCAGACGATCATACAGACACCTTTGTACACAAA
ACATCATGCCGTGCCCAGGTGGTCTTTTCTACGATGAGAAAGCTTATGGA
GGATATGGAGCTTGTATTTATAAAGCTGAATCTAACTGTCTTCAATTCCA
AGGAGAAGTTTGCTACGGATCCACTCAAGAGTCATAGTAAGTACTTGTTT
CCGTCACAACTGGCGGCCATCTTAAAATCATagccaaattttaagaaaac
gagAATATTTATACAGGTTTAGGGAAATATTTCTTGCCCATCCTTTGCAA
GAGAACAAGAACAAAATATCTTTAATGATGTGATAATACAATATCTAGAA
ATTCTGGTATTATTCGCTCATCACTTAACTTTCATTCTTTAAGAAGCTTT
CCcttaaaacaatttaatttaCCTTTACAGTGGCACTTACACTCATCAAT
GTACTGGACAAGTCACCTTATTGAAACTCGTCTCCAAATCTGGAAGTGTT
GGATGCTACAAAGGTGTCACGCCTGGTTACTGGGGTGGATGCCCACACGC
CCCACCAATCAACGTCTGGATCACCGAGCACAGAGGTGACAACTTCAAAT
ACGTCAAAAAGTCATACTACGACATTAAACACGACGTCAAATTTCCCGAA
CCGTTTACCGCTTACGACGCCAACAAATACGGATTCTATTATTTGAATGA
ATTCCATGACAAATCATCCTTCATCTACTTTACTGCAGGGCATAATGATT
ATTACACCTACTTTGTCAAAGGAAAGAAATACCGTGTCTATTATGGTGAA
GATTTGTTTGATCAAGGAGTCGGAAACAATGTAGGCAAACATTGCGTTTA
CGTCTACGCATCGTTCTACAAATACTACAAAccaaatcaagttatcaaat
tttaatttttatatttgattcactcaatttttttaacaaaaccgATATTT
TCTTTTAACTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061598-exon-scaffold_36-1491911889:926043..926052 | TCONS_00061598-exon-scaffold_36-1491911889:926043..926052 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1510915933:926043..926052 | TCONS_00061598-exon-scaffold_36-1510915933:926043..926052 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1575043694:926043..926052 | TCONS_00061598-exon-scaffold_36-1575043694:926043..926052 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1491911889:926374..926436 | TCONS_00061598-exon-scaffold_36-1491911889:926374..926436 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1510915933:926374..926436 | TCONS_00061598-exon-scaffold_36-1510915933:926374..926436 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1575043694:926374..926436 | TCONS_00061598-exon-scaffold_36-1575043694:926374..926436 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1491911889:927108..927378 | TCONS_00061598-exon-scaffold_36-1491911889:927108..927378 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1510915933:927108..927378 | TCONS_00061598-exon-scaffold_36-1510915933:927108..927378 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1575043694:927108..927378 | TCONS_00061598-exon-scaffold_36-1575043694:927108..927378 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1491911889:927623..928157 | TCONS_00061598-exon-scaffold_36-1491911889:927623..928157 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1510915933:927623..928157 | TCONS_00061598-exon-scaffold_36-1510915933:927623..928157 | Clytia hemisphaerica | exon |
| TCONS_00061598-exon-scaffold_36-1575043694:927623..928157 | TCONS_00061598-exon-scaffold_36-1575043694:927623..928157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:926043..928157 + |
Blast
The following BLAST results are available for this feature:
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