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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061592 ID=TCONS_00061592|Name=TCONS_00061592|organism=Clytia hemisphaerica|type=transcript|length=2700bpRun BLAST on NCBI protein sequence of TCONS_00061592-protein >TCONS_00061592-protein ID=TCONS_00061592-protein|Name=TCONS_00061592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp MTSSNQGSLHTLGDEGAANYIEETLSDQEPLLSNEIPPPLHPDPFHNVPRRun BLAST on NCBI transcript from alignment at scaffold_36:891490..901006+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061592 ID=TCONS_00061592|Name=TCONS_00061592|organism=Clytia hemisphaerica|type=transcript|length=9517bp|location=Sequence derived from alignment at scaffold_36:891490..901006+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:891490..901006+ >TCONS_00061592 ID=TCONS_00061592|Name=TCONS_00061592|organism=Clytia hemisphaerica|type=CDS|length=26571bp|location=Sequence derived from alignment at scaffold_36:891490..901006+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061592 vs. Swiss-Prot (Human)
Match: STAR3 (StAR-related lipid transfer protein 3 OS=Homo sapiens GN=STARD3 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 1.064e-44 Identity = 133/438 (30.37%), Postives = 206/438 (47.03%), Query Frame = 1
Query: 286 SMSRVRRMFCLLSLFDCLMTFLMWVIYLQLSDGGITDNLAPEVKNLTIHTSLFDIVLCSITRSLVLLLFYSCLIKSTKWYAVALTTSASTIFLLMKVFLLKGEYYHKGNPXXXXXXXXXXXXTWCEAWHFDFKVIPQELQTKNLGDIRTSSLPPIAGGSFLASDXXXXXXXXXXXSRFGAPSSFYTP---YAGSN-----YYGGGKSHIXXXXXXXXXXXXXXAELGRLSDQEDHALIRKANDTLHMVFRMLYISDGWNMCREEKDNIIVQSRNFDGVGKVYKLEAVIDVNSSVLDQVFWVDVDSQPSWNASVKECRILRKINKLSDIIYSVAAEAGGGIISSRDFVSLRRRKRKGPLTLLCNVSIETPLMPPVSSIVRGKNGPGGWVLRDIPGEPNKTEFIWLLNTKLGGWLPQKLVETSLAGVMVDTVRDIRQHVS 1575
++S VRR FCL FD L L+W+I L ++ GI NL E+ TS FDI + + R LLL Y+ L + W+ +A+TT S+ FL++KV L E KG + L I SF++ W E W DFKV+PQE + + ++ +A G L S + FY+P +AGS+ G KS S QE IR+ + +V ++L + W + + V + GK + L+ + + ++ Q + + WN +V C+IL+++ + I Y V+A A GG++S RDFV++RR +R+ L ++ PP VRG+NGPGG+++ P F+W+LNT L G LP+ L+ SLA M + +RQ +S
Sbjct: 45 AISDVRRTFCLFVTFDLLFISLLWIIELN-TNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVL-RLRHWWVIAVTTLVSSAFLIVKVIL--SELLSKG-AFGYLLPIVSFVLAWLETWFLDFKVLPQEAEEERW---YLAAQVAVARGPLLFSGAL-------------SEGQFYSPPESFAGSDNESDEEVAGKKS---------------------FSAQERE-YIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRIS 439 The following BLAST results are available for this feature:
BLAST of TCONS_00061592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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