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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061586 ID=TCONS_00061586|Name=TCONS_00061586|organism=Clytia hemisphaerica|type=transcript|length=1382bp
CGATTGAGCTCCATCAGCTGGACTTGATTTCTTTGGAGGGTCGTTGTGAG
GTGAAGAACGATGTTGCTATTTCGTTCTCTCTTTTCTTTCTTGATTTCGT
TTTTCTTTGTAGGCAGTCGAGGATCAAGTTTATATGCGTATTCTTGGCTT
ATGATTGTATCGGATAGATTGGATGTGATGAGTTTAGAGTTCTTATATTC
ATGCTGGCACAGTTCACTGAAGATCGGAATCGCAAGACCCCCATCTCTCG
CTGGCAACGATAGCAGTAATCTCTCTTCCTCGTTGACTGAAATGCCACCA
GTGATTGCTGGAATGAATTTTGTTGTGACTATGTTGTCCAGCGGAACCAT
GTTATCAGATATTTCTGGTATTGTTCTCATCAAGAATAGTGATGAACCAA
GTTGAGCAGTATGATCAATTTTACGAAGAATTCCATAAACTCGTCCAAGA
ACTTAAAGATACGTTGGGTGTGTCAGAACTGGAGGATATTTTACCAGCTG
TTAAGCTTCTTCAACAGTAGGAAATATATTGTTATCTTATTGGCCCTTTC
TACATCTACGTTGTTGATGTCATATTGTTAGGTCTGTGGTGGAATAAAGG
CCGGCGTTAAAAGGACCAATCAGGTCCCAAATTTTGTAATGACGGCTTGA
AAAGGTTAACTTTGTCAGGTTCTATGTCAGGGGGTATGTAGAACTGTTTT
TCTTGGTGATATCCACATTCAGAATCCTTTATTTATAAAGGTGTACCTTA
TCAGCTTTTTTACGTCGGTAGTGCTTCTAGACGTATTTTTTGATCAAGAA
AATTTCGTTAAAGGGATCGATAACTTACTGGGCTTATAATAAGGCAAAAG
TTTACTGACTGTTTTATGCCATTATACTCTgtaactttaaattttcaaat
atttttttgattttcgaaCTGAGAAAGAAATGTCAATAttatatttataa
ttttatatTCGGGCGAAGTAGAAAAACAAGGGCAAGGTCCAGAACTACCG
GTAGAGAACCAGAAAAGAAGCAATCTAAAATGCCAATGGAATTTTAATGG
TTAAAGCCTTCATTATTTTTAGCATTGAAATTATATATGTACATAAATAT
TCCTTATAatcttatcaattttttttagcaaATCTTTAATTTATTTAGGA
CGATATTTTATGAAAAACTATCCACCTATAGTAGCATGTACCATTTTATT
AGAATTTAttagaatttttagatgtttttaCTCTCAAGTATCTATACTCC
ATATAACCAATAAAACTCGCTAATTCGATGTCTGCGAAACTCTAATCGCA
AGATCTCAATAATTTGATtcctttttttaatattttaatgtaGTCTGGTa
gcatttcaaattttatatgatttgagtacgca Run BLAST on NCBI transcript from alignment at scaffold_36:816636..819803+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061586 ID=TCONS_00061586|Name=TCONS_00061586|organism=Clytia hemisphaerica|type=transcript|length=3168bp|location=Sequence derived from alignment at scaffold_36:816636..819803+ (Clytia hemisphaerica)
CGATTGAGCTCCATCAGCTGGACTTGATTTCTTTGGAGGGTCGTTGTGAG
GTGAAGAACGATGTTGCTATTTCGTTCTCTCTTTTCTTTCTTGATTTCGT
TTTTCTTTGTAGGCAGTCGAGGATCAAGTTTATATGCGTATTCTTGGCTT
ATGATTGTATCGGATAGATTGGATGTGATGAGTTTAGAGTTCTTATATTC
ATGCTGGCACAGTTCACTGAAGATCGGAATCGCAAGACCCCCATCTCTCG
CTGGCAACGATAGCAGTAATCTCTCTTCCTCGTTGACTGAAATGCCACCA
GTGATTGCTGGAATGAATTTTGTTGTGACTATGTTGTCCAGCGGAACCAT
GTTATCAGATATTTCTGGTATTGTTCTCATCAAGAATGTAAGCTTACTTT
TGAATCCACTTACAAAACAGGCGTATGCACATTGTGGTTCTATGAGAGCT
ATTTTCGAAAGTATAAGGAGCTCATCACATCGTCAACGTGTGTATCTCGG
AATGAATTTGGCCCGATATTCAACTTCAGCTTTCGAACGTTGACCTGCTT
TGACGATCAGCCAAGATTTCTTTTCTTCGGGATAGTATCCGAACAATGGA
CCGAGTCTGCACAGATTATTCCACCAACATCTGATACCACTGATCTTGCC
TGCAGCAGAAAAATCGTCAGCGTAGGCTTCGGCTTTCGTTTGATCCAGAT
GGCTCTCTGGCGTTGCATTTATCACCATCAGTAGCAGAGGTATCGTTGCG
ATTGCATAAACTGTCATAGCGATCGGGTCTCCTTGAGTCGTACCTTCTTG
TGAGAGCAGCTCGAAGCCTCCAATAACAAAAAGACGGGTTTGAATAGCAG
TTGGAAACAAATCCTGAGACTTCCAGGCAGATGACTTTGATGTTGTGTAG
GAAGGCTTTTCGGTTTACTGCATTGAATGCGTTACTTGCGTCAATTAGCA
GGACGGCTTCAGTCTTCTCCTCGTCATAAATTAATTTCATGGCATGGATG
GCAGCCTCACAGCCACCTTCCTGTCCGGCACGGACCTGAAGAGACGTGAC
TGATTTAATGATACGATCGCGAGTGGTAGCGACAACAGCAGACAATTCTT
CGGAGGATTTCTCCAACACCGTTCGGCCTGAGTCCTGGGTCCCCTTTTAA
ATTTCCGTTCAGGAAATTCGATAAGCATTGAAGATCTCATCAATTTTTAA
GGGAAATTGTCGTTCTTGAAAGTTTCGCGACGGTGGTTTACGTCGAATGA
GCAATTCCATTTTATATTCATACATttgacgaacatttccagggtgTAAT
CCGACACGAATTTCGAGGAGGTCTaaaggaatgtttttttttttccaggg
ggtgcTATTCTataatttccagggggttgaaggactgattttagttcgtc
caccaccctcactttaaggcaTGAGAAAACTCTTTCAAGAGGGTCTTTTG
AGAATTCTCCATTTTCGAGGGGttggttaaaaaaattaaaaattttccag
gggtcatccacacatttccaagaatttttctTTCGCCTTGAAATGGTCTT
GAAGCAGCCCAATTAAAGTGTCaattgaattttgtttttatgaCGAAAAG
ACAACAAAGTTCCATCCCATGGATTATTCTGTAACAAGGATACGACATCA
GTTACTTTAAAAGCAATTTATTTATTAACAGAGTGATGAACCAAGTTGAG
CAGTATGATCAATTTTACGAAGAATTCCATAAACTCGTCCAAGAACTTAA
AGATACGTTGGGTAAGAacaaaaattgcttaaaatctTGTAGACCTGTTC
CATACGACCTTTGATGAATCAGAAGTTTAATTCTTAACAACACACGGGTT
GAAAAATTATACAGTGCAAtaaaaacatgtgattactcgaaaattAAAGC
GTCATTTGACtttagactttaattttgcaacccgtgtatttcAGGTTGAc
tgtctttcttttataagagcaatGCGGCTCAAAATCCCCAACAAAACaag
aataatttgaaaataatactGAGCCTGAAATGAcccaatttcaagcaatt
tagaggttAAAGTCGTAAAAATTGGGCAcaacgcctaaaatacctcattT
ACATCCCATAAACAAGAGCAGAAATtgaacaattttaggctcaaagtgcc
aaaaaaaatgTGAACTTCATCACGTcgaattgaatttaaaaaacatttca
agtGACTACAGTTAGTATCTCCTCTAATAATTCTTCCTTTTCCTTGTTTG
TAGGTGTGTCAGAACTGGAGGATATTTTACCAGCTGTTAAGCTTCTTCAA
CAGTAGGAAATATATTGTTATCTTATTGGCCCTTTCTACATCTACGTTGT
TGATGTCATATTGTTAGGTCTGTGGTGGAATAAAGGCCGGCGTTAAAAGG
ACCAATCAGGTCCCAAATTTTGTAATGACGGCTTGAAAAGGTTAACTTTG
TCAGGTTCTATGTCAGGGGGTATGTAGAACTGTTTTTCTTGGTGATATCC
ACATTCAGAATCCTTTATTTATAAAGGTGTACCTTATCAGCTTTTTTACG
TCGGTAGTGCTTCTAGACGTATTTTTTGATCAAGAAAATTTCGTTAAAGG
GATCGATAACTTACTGGGCTTATAATAAGGCAAAAGTTTACTGACTGTTT
TATGCCATTATACTCTgtaactttaaattttcaaatatttttttgatttt
cgaaCTGAGAAAGAAATGTCAATAttatatttataattttatatTCGGGC
GAAGTAGAAAAACAAGGGCAAGGTCCAGAACTACCGGTAGAGAACCAGAA
AAGAAGCAATCTAAAATGCCAATGGAATTTTAATGGTTAAAGCCTTCATT
ATTTTTAGCATTGAAATTATATATGTACATAAATATTCCTTATAatctta
tcaattttttttagcaaATCTTTAATTTATTTAGGACGATATTTTATGAA
AAACTATCCACCTATAGTAGCATGTACCATTTTATTAGAATTTAttagaa
tttttagatgtttttaCTCTCAAGTATCTATACTCCATATAACCAATAAA
ACTCGCTAATTCGATGTCTGCGAAACTCTAATCGCAAGATCTCAATAATT
TGATtcctttttttaatattttaatgtaGTCTGGTagcatttcaaatttt
atatgatttgagtacgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061586-exon-scaffold_36-1491911889:816636..817022 | TCONS_00061586-exon-scaffold_36-1491911889:816636..817022 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1510915933:816636..817022 | TCONS_00061586-exon-scaffold_36-1510915933:816636..817022 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1575043694:816636..817022 | TCONS_00061586-exon-scaffold_36-1575043694:816636..817022 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1491911889:818317..818396 | TCONS_00061586-exon-scaffold_36-1491911889:818317..818396 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1510915933:818317..818396 | TCONS_00061586-exon-scaffold_36-1510915933:818317..818396 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1575043694:818317..818396 | TCONS_00061586-exon-scaffold_36-1575043694:818317..818396 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1491911889:818889..819803 | TCONS_00061586-exon-scaffold_36-1491911889:818889..819803 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1510915933:818889..819803 | TCONS_00061586-exon-scaffold_36-1510915933:818889..819803 | Clytia hemisphaerica | exon |
| TCONS_00061586-exon-scaffold_36-1575043694:818889..819803 | TCONS_00061586-exon-scaffold_36-1575043694:818889..819803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:816636..819803 + |
Blast
The following BLAST results are available for this feature:
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