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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061584 ID=TCONS_00061584|Name=TCONS_00061584|organism=Clytia hemisphaerica|type=transcript|length=2336bp
atactttgtaagagttcttaaaaattaaacagcaattgttcttaaattgg
tcttatttttttagtgattttaagtctccttgttcttgtaaaattgtttc
atcaaggctcgatgtaaagtagatttcagattatcTTTAATAtctacttc
ttctttttcccatgcagttcaaattctaggcgaaattttcgacttcaagt
cgtcttgttttatatttaaataaatcaattagtcatagaaaattttcaaa
attattgacGAATATTTGTCAATGCCTCAGTGACACCGACATCATAAATC
GCCGAAGAAAAGTTCTGTGTGGTTCTACTACCACGAAAACACGTATATAT
TGCTCTAATGAGCATAAAGTTCAGTTTGCGAAAAAAACACGAAACAGTCT
CTGAATATCATAATCGTTCTTTGTTTGAAATCATATATGAGAGTCTCTTA
ATAAATTTTAGACATTCTCGACCAGTTCCACCAGTTGCTGCGAATACGAG
GGGAGTGAATGAGCCGTGCTCAATTTGAAGAACTCATTCGTTGTACTCtc
gttttttatcattttcatttacGACGTAACTTCGCGTCGGATCTTAAGTG
GCATACCTCTTCGCTAATGGGTTGAAAACCCTtacatcaaaaaatgcttt
ctggCCGGTCACCCAAAATCCTCTTGCTGATACATCGAGTCTGGCTTCAC
GAGATGTGTTGGCAGATTTCGGTAGAGTTTCAATACCTACTAACGGCTGT
AGGGTTGGTTCTTTCTGGACATCTCGGCAAACCTTTGATAGCTGGTTTGC
TATAAAGTCGCGGATCTCGTTGTGCCTCATTGATACGAAACCACCTTTTT
TGCACGTCAGGGCATGTTCGAGCGAGAACGGAGTTCCACATTCGCAATGA
GAAGGTGTACGTTGTAATGCCCACCCGTAACGATTAAGTCAACGAAACAT
TGCTTGTTGAGAGTGTACCCTTCGGTTTTGAACAGGCAAAGTCGTGGTGT
TGTCGATTGAGCTCCATCAGCTGGACTTGATTTCTTTGGAGGGTCGTTGT
GAGGTGAAGAACGATGTTGCTATTTCGTTCTCTCTTTTCTTTCTTGATTT
CGTTTTTCTTTGTAGGCAGTCGAGGATCAAGTTTATATGCGTATTCTTGG
CTTATGATTGTATCGGATAGATTGGATGTGATGAGTTTAGAGTTCTTATA
TTCATGCTGGCACAGTTCACTGAAGATCGGAATCGCAAGACCCCCATCTC
TCGCTGGCAACGATAGCAGTAATCTCTCTTCCTCGTTGACTGAAATGCCA
CCAGTGATTGCTGGAATGAATTTTGTTGTGACTATGTTGTCCAGCGGAAC
CATGTTATCAGATATTTCTGGTATTGTTCTCATCAAGAATGTAAGCTTAC
TTTTGAATCCACTTACAAAACAGGCGTATGCACATTGTGGTTCTATGAGA
GCTATTTTCGAAAGTATAAGGAGCTCATCACATCGTCAACGTGTGTATCT
CGGAATGAATTTGGCCCGATATTCAACTTCAGCTTTCGAACGTTGACCTG
CTTTGACGATCAGCCAAGATTTCTTTTCTTCGGGATAGTATCCGAACAAT
GGACCGAGTCTGCACAGATTATTCCACCAACATCTGATACCACTGATCTT
GCCTGCAGCAGAAAAATCGTCAGCGTAGGCTTCGGCTTTCGTTTGATCCA
GATGGCTCTCTGGCGTTGCATTTATCACCATCAGTAGCAGAGGTATCGTT
GCGATTGCATAAACTGTCATAGCGATCGGGTCTCCTTGAGTCGTACCTTC
TTGTGAGAGCAGCTCGAAGCCTCCAATAACAAAAAGACGGGTTTGAATAG
CAGTTGGAAACAAATCCTGAGACTTCCAGGCAGATGACTTTGATGTTGTG
TAGGAAGGCTTTTCGGTTTACTGCATTGAATGCGTTACTTGCGTCAATTA
GCAGGACGGCTTCAGTCTTCTCCTCGTCATAAATTAATTTCATGGCATGG
ATGGCAGCCTCACAGCCACCTTCCTGTCCGGCACGGACCTGAAGAGACGT
GACTGATTTAATGATACGATCGCGAGTGGTAGCGACAACAGCAGACAATT
CTTCGGAGGATTTCTCCAACACCGTTCGGCCTGAGTCCTGGGTCCCCTTT
TAAATTTCCGTTCAGGAAATTCGATAAGCATTGAAGATCTCATCAATTTT
TAAGGGAAATTGTCGTTCTTGAAAGTTTCGCGACGGTGGTTTACGTCGAA
TGAGCAATTCCATTTTATATTCATACATttgacgaacatttccagggtgT
AATCCGACACGAATTTCGAGGAGGTCTaaaggaatg Run BLAST on NCBI transcript from alignment at scaffold_36:815633..817968+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061584 ID=TCONS_00061584|Name=TCONS_00061584|organism=Clytia hemisphaerica|type=transcript|length=2336bp|location=Sequence derived from alignment at scaffold_36:815633..817968+ (Clytia hemisphaerica)
atactttgtaagagttcttaaaaattaaacagcaattgttcttaaattgg
tcttatttttttagtgattttaagtctccttgttcttgtaaaattgtttc
atcaaggctcgatgtaaagtagatttcagattatcTTTAATAtctacttc
ttctttttcccatgcagttcaaattctaggcgaaattttcgacttcaagt
cgtcttgttttatatttaaataaatcaattagtcatagaaaattttcaaa
attattgacGAATATTTGTCAATGCCTCAGTGACACCGACATCATAAATC
GCCGAAGAAAAGTTCTGTGTGGTTCTACTACCACGAAAACACGTATATAT
TGCTCTAATGAGCATAAAGTTCAGTTTGCGAAAAAAACACGAAACAGTCT
CTGAATATCATAATCGTTCTTTGTTTGAAATCATATATGAGAGTCTCTTA
ATAAATTTTAGACATTCTCGACCAGTTCCACCAGTTGCTGCGAATACGAG
GGGAGTGAATGAGCCGTGCTCAATTTGAAGAACTCATTCGTTGTACTCtc
gttttttatcattttcatttacGACGTAACTTCGCGTCGGATCTTAAGTG
GCATACCTCTTCGCTAATGGGTTGAAAACCCTtacatcaaaaaatgcttt
ctggCCGGTCACCCAAAATCCTCTTGCTGATACATCGAGTCTGGCTTCAC
GAGATGTGTTGGCAGATTTCGGTAGAGTTTCAATACCTACTAACGGCTGT
AGGGTTGGTTCTTTCTGGACATCTCGGCAAACCTTTGATAGCTGGTTTGC
TATAAAGTCGCGGATCTCGTTGTGCCTCATTGATACGAAACCACCTTTTT
TGCACGTCAGGGCATGTTCGAGCGAGAACGGAGTTCCACATTCGCAATGA
GAAGGTGTACGTTGTAATGCCCACCCGTAACGATTAAGTCAACGAAACAT
TGCTTGTTGAGAGTGTACCCTTCGGTTTTGAACAGGCAAAGTCGTGGTGT
TGTCGATTGAGCTCCATCAGCTGGACTTGATTTCTTTGGAGGGTCGTTGT
GAGGTGAAGAACGATGTTGCTATTTCGTTCTCTCTTTTCTTTCTTGATTT
CGTTTTTCTTTGTAGGCAGTCGAGGATCAAGTTTATATGCGTATTCTTGG
CTTATGATTGTATCGGATAGATTGGATGTGATGAGTTTAGAGTTCTTATA
TTCATGCTGGCACAGTTCACTGAAGATCGGAATCGCAAGACCCCCATCTC
TCGCTGGCAACGATAGCAGTAATCTCTCTTCCTCGTTGACTGAAATGCCA
CCAGTGATTGCTGGAATGAATTTTGTTGTGACTATGTTGTCCAGCGGAAC
CATGTTATCAGATATTTCTGGTATTGTTCTCATCAAGAATGTAAGCTTAC
TTTTGAATCCACTTACAAAACAGGCGTATGCACATTGTGGTTCTATGAGA
GCTATTTTCGAAAGTATAAGGAGCTCATCACATCGTCAACGTGTGTATCT
CGGAATGAATTTGGCCCGATATTCAACTTCAGCTTTCGAACGTTGACCTG
CTTTGACGATCAGCCAAGATTTCTTTTCTTCGGGATAGTATCCGAACAAT
GGACCGAGTCTGCACAGATTATTCCACCAACATCTGATACCACTGATCTT
GCCTGCAGCAGAAAAATCGTCAGCGTAGGCTTCGGCTTTCGTTTGATCCA
GATGGCTCTCTGGCGTTGCATTTATCACCATCAGTAGCAGAGGTATCGTT
GCGATTGCATAAACTGTCATAGCGATCGGGTCTCCTTGAGTCGTACCTTC
TTGTGAGAGCAGCTCGAAGCCTCCAATAACAAAAAGACGGGTTTGAATAG
CAGTTGGAAACAAATCCTGAGACTTCCAGGCAGATGACTTTGATGTTGTG
TAGGAAGGCTTTTCGGTTTACTGCATTGAATGCGTTACTTGCGTCAATTA
GCAGGACGGCTTCAGTCTTCTCCTCGTCATAAATTAATTTCATGGCATGG
ATGGCAGCCTCACAGCCACCTTCCTGTCCGGCACGGACCTGAAGAGACGT
GACTGATTTAATGATACGATCGCGAGTGGTAGCGACAACAGCAGACAATT
CTTCGGAGGATTTCTCCAACACCGTTCGGCCTGAGTCCTGGGTCCCCTTT
TAAATTTCCGTTCAGGAAATTCGATAAGCATTGAAGATCTCATCAATTTT
TAAGGGAAATTGTCGTTCTTGAAAGTTTCGCGACGGTGGTTTACGTCGAA
TGAGCAATTCCATTTTATATTCATACATttgacgaacatttccagggtgT
AATCCGACACGAATTTCGAGGAGGTCTaaaggaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061584-exon-scaffold_36-1491911889:815633..817968 | TCONS_00061584-exon-scaffold_36-1491911889:815633..817968 | Clytia hemisphaerica | exon |
| TCONS_00061584-exon-scaffold_36-1510915933:815633..817968 | TCONS_00061584-exon-scaffold_36-1510915933:815633..817968 | Clytia hemisphaerica | exon |
| TCONS_00061584-exon-scaffold_36-1575043694:815633..817968 | TCONS_00061584-exon-scaffold_36-1575043694:815633..817968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:815633..817968 + |
Blast
The following BLAST results are available for this feature:
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