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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061579 ID=TCONS_00061579|Name=TCONS_00061579|organism=Clytia hemisphaerica|type=transcript|length=3185bp
ATAATTCACTAGGGCTATTCAATGATGgttctaattttatttgaaatact
TCAGAAAGAATTTTGTGGGTTACATGTTACTCGCCTTTAAAAGTAGATTT
TACAAACCTGTTCAAAGCAGAAAACAACATCTTATCATCAAtacatcttt
ttatttttattgtagTGTTTATTAGATAAGTTAAAAAAAGAGTTGAGAAA
AAGTATGGAAACCAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAA
GTAAACCTATCACCCCACCTGCTAATACAAACAGTGAACAGAGGAATGAT
GGACTGTTCTTTgcacttgttttgattttcgaGCTGTTGTGTATACTTAC
AATAGTGTTATTGGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTT
GGGATGGTTCTGGCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTT
GGAATGATCGTTCTCTATGGAAATGCTGCCATTTCATACCGTGTATTCAA
TACCGCACCCAAATTTCAGATCAAATTATTACACGCTGGATTGCACGGTT
TGGCTCTTGTTTTCATGATTGTTGGATTGGTTGCTGTTTTTGGATTCCAT
AATCATAATAACATTCCCAACCTGTACAGTCTTCATAGTTGGATTGGTAT
TTTGACTGTCACTCTGTTCTCAGCACAGTATTTACTTGGATTCACAGCTT
TCTTGTTCCCCAAGTTTGGTGACGACCTTCGAGCTATAGCGTTGAAATAC
CATCAATTCTTTGGACGTGCAATTTTATATCTTGTTGTTATTGCGTCTGT
TTCCGGGTTaactgaaaaaatgttgtttgcACATAGTGCGGACTACAAGT
ATTTCATCCCTGTTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGCA
ATCATGGCAATGCTTGTCGAATACATTGTCCACGAGCCAACATTCAAACG
TGAAGAACCATATGAGGTTTTACAATAATCaacatttttgttcaaatttt
agtTTCTCGCCTCCGATCATTCAGTATTCGTGCTTTTGAAATAACTGAAT
ATAGCTTAACTAACCTGATTTATATACAAATTTCTCTGAGTGAAAATAGa
gagtacatgttttttataagaattgcaCTTATAGAATATCTAGGCtcatt
tttttggcaaaaatttaagcatatgctaagcattatACCTAGTGCCTATC
TTTTCAGAGTTATCtctttttggctggaattttacggattttcctaaaat
tttgcTTGTATAGATGCATCCTTATAAGCATTTTTAAGCCTTGTCAAGCC
CTCGACCTAATCATCTCCGAgcctttttcgaatttttgtatgcttataaa
aaacatgtacaattGATAAAGTGGGTGAAATTAAATTGTAGAGACAGTAG
AAAAATTCACCTGTCGTTCCAGTTTAGATGCATGCTATTATATTAAACTA
TCAGACATTTGTAGGAAATTTAAATGCATGATATTTATTTCTCCTCCTTC
TTCAGCCTGTCCCCGTGTATTATGGACACGAAtagctttttaaccaatca
ctGACTGACACCATTTGACTCACATACACCTCATATAACTAACCATTGAT
TGCCGAGTGCCATTGAATATACCANACGTGTAGGTCTTTAGTccgtcttt
gtttttttttaacgttttgttttacttttgagATCTACATAGGACTCACC
TTTTCCATACGTTAAAAACATAATACAGTCTCGTTCTCAATTAGAGTTTG
TTTTTCATGGATTACACAATGTTTTATTTTATCCCAAATTTCagtttaga
tgttcttataaactgggttctaataagaAATGACAGAGCTGGCACTCAAC
GTCACAACAACATTAATCAATCATCAACGACATCttacgttagatgaacg
ttgaaataacgNTTATTAGGTGTAAGAAGTATAATTTATATTCGTGTGAT
AGGGTAGATGTTTTAGATgaggatacacgtttttttttttattagaacct
agtttataagaacatataggctgaaattcgtcgaaaaattaagaacatct
taagaacatgcccagcctcagtttgNTTGTTTGGGTCATTATTTATGTCT
TATCTGATATTcactttaaagggacataaaagtagtaagatgtaaacatt
gcgcgaaccatgTGTCCTTAAAGGGAACAAATAAAATcatgtgtccaaaa
caaacttgcaaaacaattgaaacaatcaaaatcagccatatatgttttga
ttttgtatgcagcggatacggtttgtttacaaatttcgtcagtactttta
tgtccctttaaacacAAACACACTTTACTGTACTTTTctttagaaattta
tttttgataaatgtGCGATTGTCAAGTAATGGATTCAAGTCTTGTGTTTA
TGAAAATTTCTCTTTCTACTATTAACAACAATTAATTTTAAAGGTGAGAC
TTGAACTCCTCTCACCTTTTGACTAAATACCactttgattatttttgaag
aaataaaatGATAATAATTTCATTTGCAAATAATAGTGATTAAAACTGAT
CAAaatttacatgatttttttttggttaacATAATATTTTTGTTAGGAAT
TTAATCTATACAActgcattttatttttattttttcatatattatgtcaa
ctctctctaattcgaacttctataatcTGGTTtagaatactttctataat
tcgaatttttctctaattcgaagaaaagttATAATTCCTTGAACATCGAA
TCAGAAAGAGTGAACTAtactaataaatattttttggtagatttttattt
tgttgatctAACACAAACTTAACGGACAATGCTCATAATTTCCTTTTTTC
CGAATTAAATTTATTTGTGAAGACCAAGAGGGAAAATGAGCCTTGGCTGT
TAAGAAATCgggtataaatattttttttcagagtaTTGCTTATAGAATTG
CtctgttttgatttaatttatcTTATATTGCTAGAAATTATTGGATTTTA
GAAGCAAAGGTTTCTGACATTATTGCCAAATAATATCAGGTAATATCAAT
ATTTCTTAGGAGCTGTAAATGAAAATTAATATAGGGTGAGatattatata
taatatatattttatgatttatttcgattAAAGAGATACGGAGAAAATTA
TACAATCTTTCGTCCTTCTTTATCCGATCCCTTAG Run BLAST on NCBI transcript from alignment at scaffold_36:717432..723367+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061579 ID=TCONS_00061579|Name=TCONS_00061579|organism=Clytia hemisphaerica|type=transcript|length=5936bp|location=Sequence derived from alignment at scaffold_36:717432..723367+ (Clytia hemisphaerica)
ATAATTCACTAGGGCTATTCAATGATGgttctaattttatttgaaatact
TCAGAAAGAATTTTGTGGGTTACATGTTACTCGCCTTTAAAAGTAGATTT
TACAAACCTGTTCAAAGCAGAAAACAACATCTTATCATCAAtacatcttt
ttatttttattgtagTGTTTATTAGATAAGTTAAAAAAAGAGTTGAGAAA
AAGTATGGAAACCAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAA
GTAAACCTATCACCCCACCTGCTAATACAAACAGTGAACAGAGGAATGAT
GGACTGTTCTTTgcacttgttttgattttcgaGCTGTTGTGTATACTTAC
AATAGTGTTATTGGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTT
GGGATGGTTCTGGCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTT
GGAATGATCGTTCTCTATGGAAATGGTAAGCAAAGTATTTTTATTCATAC
TTCTAATACTTAATGGGGAAATTCAGCTTAGTAAAAAATTTACTATAACT
TTACTTGGCTAGCATGTAAGGGGTTGGTTCCCCATtggaatttgaatgaa
aatgtcTTGTATTTCGATTCTTTAGTTACTAATGATACTATAATGggagc
aaaaatgtttttttattctaataaaaatgtttatcatttTAAAACTTCAT
ATATTGCTAATCATCAATCATGATCAATTTATCTTTCAGCTGCCATTTCA
TACCGTGTATTCAATACCGCACCCAAATTTCAGATCAAATTATTACACGC
TGGATTGCACGGTTTGGCTCTTGTTTTCATGATTGTTGGATTGGTTGCTG
TTTTTGGATTCCATAATCATAATAACATTCCCAACCTGTACAGTCTTCAT
AGTTGGATTGGTATTTTGACTGTCACTCTGTTCTCAGCACAGGTACTCTT
TTTATTATAAAGTAagagcctgaacctttcatgtcaaaagtcccgaaaac
actgaaaacactttgtctgaaacactttttctgaaCCTTTCAAGCTTTTT
TGGGATGTGTTGGCAAAAATCATTTCCCAGAAACACCTTACCTCTCGAGG
TGGTGTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCCTAAATCAACT
CTCAATTTTCTCTATAAAATCCAAGCCAAAATGCATTACCTGAAACACCG
GCAAGTTTCTGAACCATTCAGTGTTTCTCTGGTGTTCAAGGTGTTTTTCA
AGAcgattttgaagctcttgcagtgTCCTGTCGGaaccaatcagataaaa
atcgGGTTTAAAATCGGGTtagaaaatggagaaaaaatcggaaaaattag
CCAGTCGGGACTTTTTTtaacagtcggcttcaacaggACATTCGGTGttt
ctaaaaacttttaaaactgaACCATTCgtgttcaaaagtgttttctgcaa
accaggtaagcaatgtgttttttaagacatgaaaggttcaggctctAAGT
CTGTGACCGCAGTTGGAGGCGACCCAAAGGTAGGGGAAGGCGCCACTCTT
TTTCCCTGTATTGCTCAACTTCCCTTGATCATTcttttagttgctgagca
ttaaGTACGAAGTCTTGGTAGGACCCGGCAtttgaacccacgaccttgcG
CTACGGTCGCTTATAGGAACattaaaatgctaaaataccAGTCTGTTTGC
TCAGGTAGATCTTTTATAGAACATTATGAAAAGGCTAGAAAAGCAAGTCT
gtttttattcgggtagtttcttataaaacattgGGCCATTCTATTTATAT
CCATACGTGGGGGTGAATGAACTTCCAAATGGGGCAGGAAATATCCCAAG
AGGTCTaggtaatttttctttcatttttccagcAGTTTGACCATgaccat
tttttgaagaaaaaaattaaatgatttGAATGTTCTGAACTTTTTAGGTT
TGAATCCTTAAAGTGTTATAAGTAAATGTTGAGTATGTTATAGGCTAAAA
AGGTGATTTGGTATTGGTTGTAGCTTAGTATCATATCAATCTAAGCTTTG
ATTTTCAATTAGTCCTAATAGGGATACAGAGCAATTGCTTTTAGGACGTT
TAGCACGtttaaagccattgaccttttacatagttgGCGAATCTCGCAAG
GAAAATGGaggaaaaaatcgatgaaaatgaccaagaaTTGCCGCTTAAAA
ATGAGGTTTGCACCCCAGAAAAATGCATTATTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATGGAACGAGTTGAAACATGCAGAAACACCAAAATCGAAGGACttcaa
aaggaaattaaagcatgtgaaaacatcatgaaagtacaaaatgaagaaat
ctCCCAACTTAAATCAAAAGACGTCGCTGTtattacaaaagaaatcaaag
aaagcctCGAAGCAAAGATGAGCATACTCGAGAAGAAGATAGAAACAAAG
ATCGAGAACATCATAATTGAAAAGAAGCAAGAGCTGAAAGAGGTTAGTTA
TGCTGAAGCTGTATCCAAACATATGAATCAACAATCGAATAAGGTGGAGA
AAATAATTCGAAGTGAAACAGTCGGTAAACAACGATCCACAGCGTGCAAC
CTAATTTTCCATGGAATCAAAGAACATTTGGAGGATCCTGAGAATACAAC
GAAAATTTACGACGAGAAATTTATCAAGTACAGAGTCCTTGGATTACAAC
TGGGTATCAAGGACATAAAAATTGTAAACACACAGAGGATTGGAGTATTC
ACGNAAATAaataatgtatgttgattcagcagattgaaataaatagaatc
ttttgtaatgaataaagaaaaatgtggagcaagatttctttcttcctttt
atttacaaatttgaaaggactcttttattaaaattttgctgacatcagtt
tcagacgagtcgggtgtatataacaccgtataatcCCTTTAACACTGCAA
AATTTTTTAACTACAGTAACATAAAAATCTATATTTTCTCCTTTTAGTAT
TTACTTGGATTCACAGCTTTCTTGTTCCCCAAGTTTGGTGACGACCTTCG
AGCTATAGCGTTGAAATACCATCAATTCTTTGGACGTGCAATTTTATATC
TTGTTGTTATTGCGTCTGTTTCCGGGTTaactgaaaaaatgttgtttgcG
TAAGTTTTATACATTCTATTTCATTTCCTCGAAAATTTCCCGAGTAAAAG
TCGAAGAAAACtgagaaatatttcaaattctaaGCTAAAGAAGATTCAAA
CTTTGGTGGATAAAATCATTAGATAGCTTTAATGACAATCTCGGAAATAT
TACTCTAACCAAACATTTTCTTCCAATTCAGACATAGTGCGGACTACAAG
TATTTCATCCCTGTTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGC
AATCATGGCAATGCTTGTCGAATACATTGTCCACGAGCCAACATTCAAAC
GTGAAGAACCATATGAGGTTTTACAATAATCaacatttttgttcaaattt
tagtTTCTCGCCTCCGATCATTCAGTATTCGTGCTTTTGAAATAACTGAA
TATAGCTTAACTAACCTGATTTATATACAAATTTCTCTGAGTGAAAATAG
agagtacatgttttttataagaattgcaCTTATAGAATATCTAGGCtcat
ttttttggcaaaaatttaagcatatgctaagcattatACCTAGTGCCTAT
CTTTTCAGAGTTATCtctttttggctggaattttacggattttcctaaaa
ttttgcTTGTATAGATGCATCCTTATAAGCATTTTTAAGCCTTGTCAAGC
CCTCGACCTAATCATCTCCGAgcctttttcgaatttttgtatgcttataa
aaaacatgtacaattGATAAAGTGGGTGAAATTAAATTGTAGAGACAGTA
GAAAAATTCACCTGTCGTTCCAGTTTAGATGCATGCTATTATATTAAACT
ATCAGACATTTGTAGGAAATTTAAATGCATGATATTTATTTCTCCTCCTT
CTTCAGCCTGTCCCCGTGTATTATGGACACGAAtagctttttaaccaatc
actGACTGACACCATTTGACTCACATACACCTCATATAACTAACCATTGA
TTGCCGAGTGCCATTGAATATACCANACGTGTAGGTCTTTAGTccgtctt
tgtttttttttaacgttttgttttacttttgagATCTACATAGGACTCAC
CTTTTCCATACGTTAAAAACATAATACAGTCTCGTTCTCAATTAGAGTTT
GTTTTTCATGGATTACACAATGTTTTATTTTATCCCAAATTTCagtttag
atgttcttataaactgggttctaataagaAATGACAGAGCTGGCACTCAA
CGTCACAACAACATTAATCAATCATCAACGACATCttacgttagatgaac
gttgaaataacgNTTATTAGGTGTAAGAAGTATAATTTATATTCGTGTGA
TAGGGTAGATGTTTTAGATgaggatacacgtttttttttttattagaacc
tagtttataagaacatataggctgaaattcgtcgaaaaattaagaacatc
ttaagaacatgcccagcctcagtttgNTTGTTTGGGTCATTATTTATGTC
TTATCTGATATTcactttaaagggacataaaagtagtaagatgtaaacat
tgcgcgaaccatgTGTCCTTAAAGGGAACAAATAAAATcatgtgtccaaa
acaaacttgcaaaacaattgaaacaatcaaaatcagccatatatgttttg
attttgtatgcagcggatacggtttgtttacaaatttcgtcagtactttt
atgtccctttaaacacAAACACACTTTACTGTACTTTTctttagaaattt
atttttgataaatgtGCGATTGTCAAGTAATGGATTCAAGTCTTGTGTTT
ATGAAAATTTCTCTTTCTACTATTAACAACAATTAATTTTAAAGGTGAGA
CTTGAACTCCTCTCACCTTTTGACTAAATACCactttgattatttttgaa
gaaataaaatGATAATAATTTCATTTGCAAATAATAGTGATTAAAACTGA
TCAAaatttacatgatttttttttggttaacATAATATTTTTGTTAGGAA
TTTAATCTATACAActgcattttatttttattttttcatatattatgtca
actctctctaattcgaacttctataatcTGGTTtagaatactttctataa
ttcgaatttttctctaattcgaagaaaagttATAATTCCTTGAACATCGA
ATCAGAAAGAGTGAACTAtactaataaatattttttggtagatttttatt
ttgttgatctAACACAAACTTAACGGACAATGCTCATAATTTCCTTTTTT
CCGAATTAAATTTATTTGTGAAGACCAAGAGGGAAAATGAGCCTTGGCTG
TTAAGAAATCgggtataaatattttttttcagagtaTTGCTTATAGAATT
GCtctgttttgatttaatttatcTTATATTGCTAGAAATTATTGGATTTT
AGAAGCAAAGGTTTCTGACATTATTGCCAAATAATATCAGGTAATATCAA
TATTTCTTAGGAGCTGTAAATGAAAATTAATATAGGGTGAGatattatat
ataatatatattttatgatttatttcgattAAAGAGATACGGAGAAAATT
ATACAATCTTTCGTCCTTCTTTATCCGATCCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061579-exon-scaffold_36-1491911889:717432..717906 | TCONS_00061579-exon-scaffold_36-1491911889:717432..717906 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1510915933:717432..717906 | TCONS_00061579-exon-scaffold_36-1510915933:717432..717906 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1575043694:717432..717906 | TCONS_00061579-exon-scaffold_36-1575043694:717432..717906 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1491911889:718171..718373 | TCONS_00061579-exon-scaffold_36-1491911889:718171..718373 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1510915933:718171..718373 | TCONS_00061579-exon-scaffold_36-1510915933:718171..718373 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1575043694:718171..718373 | TCONS_00061579-exon-scaffold_36-1575043694:718171..718373 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1491911889:720679..720830 | TCONS_00061579-exon-scaffold_36-1491911889:720679..720830 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1510915933:720679..720830 | TCONS_00061579-exon-scaffold_36-1510915933:720679..720830 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1575043694:720679..720830 | TCONS_00061579-exon-scaffold_36-1575043694:720679..720830 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1491911889:721013..723367 | TCONS_00061579-exon-scaffold_36-1491911889:721013..723367 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1510915933:721013..723367 | TCONS_00061579-exon-scaffold_36-1510915933:721013..723367 | Clytia hemisphaerica | exon |
| TCONS_00061579-exon-scaffold_36-1575043694:721013..723367 | TCONS_00061579-exon-scaffold_36-1575043694:721013..723367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:717432..723367 + |
Blast
BLAST of TCONS_00061579 vs. Swiss-Prot (Human)
Match: CYAC3 (Cytochrome b ascorbate-dependent protein 3 OS=Homo sapiens GN=CYB561A3 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.297e-43 Identity = 98/226 (43.36%), Postives = 134/226 (59.29%), Query Frame = 1
Query: 298 DGLFFALVLIFELLCILTIVLLVYWGHNFFGGYGWDGSGKMFNWHPLMMVLGMIVLYGNAAISYRVFNT--APKFQIKXXXXXXXXXXXVFMIVGLVAVFGFHNHNNIPNLYSLHSWIGILTVTLFSAQYLLGFTAFLFPKFGDDLRAIALKYHQFFGRAILYLVVIASVSGLTEKMLFA---HSADYKYFIPVGNIANVIGVVLAIMAMLVEYIVHEPTFKREEP 960
G F+ L+ L + I+ +YW + GG+ W+GS MFNWHP++MV GM+V YG A++ YR+ + PK KLLHA LH +A V +VGLVAVF FHNH NLYSLHSW+GI TV LF+ Q+ LGF FL P LR++ H FFG AIL L + + +SG+ EK+ F+ + Y AN G+++ +LV YI+ ++KR EP
Sbjct: 3 SGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEP 228
The following BLAST results are available for this feature:
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