TCONS_00061578 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061578
Unique Name	TCONS_00061578
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2646

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_36:717432..723367+
coding sequence from alignment at scaffold_36:717432..723367+

transcript sequence

>TCONS_00061578 ID=TCONS_00061578|Name=TCONS_00061578|organism=Clytia hemisphaerica|type=transcript|length=2646bp
ATAATTCACTAGGGCTATTCAATGATGgttctaattttatttgaaatact
TCAGAAAGAATTTTGTGGGTTACATGTTACTCGCCTTTAAAAGTAGATTT
TACAAACCTGTTCAAAGCAGAAAACAACATCTTATCATCAAtacatcttt
ttatttttattgtagTGTTTATTAGATAAGTTAAAAAAAGAGTTGAGAAA
AAGTATGGAAACCAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAA
GTAAACCTATCACCCCACCTGCTAATACAAACAGTGAACAGAGGAATGAT
GGACTGTTCTTTgcacttgttttgattttcgaGCTGTTGTGTATACTTAC
AATAGTGTTATTGGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTT
GGGATGGTTCTGGCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTT
GGAATGATCGTTCTCTATGGAAATGCTGCCATTTCATACCGTGTATTCAA
TACCGCACCCAAATTTCAGATCAAATTATTACACGCTGGATTGCACGGTT
TGGCTCTTGTTTTCATGATTGTTGGATTGGTTGCTGTTTTTGGATTCCAT
AATCATAATAACATTCCCAACCTGTACAGTCTTCATAGTTGGATTGGTAT
TTTGACTGTCACTCTGTTCTCAGCACAGTATTTACTTGGATTCACAGCTT
TCTTGTTCCCCAAGTTTGGTGACGACCTTCGAGCTATAGCGTTGAAATAC
CATCAATTCTTTGGACGTGCAATTTTATATCTTGTTGTTATTGCGTCTGT
TTCCGGGTTaactgaaaaaatgttgtttgcACATAGTGCGGACTACAAGT
ATTTCATCCCTGTTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGCA
ATCATGGCAATGCTTGTCGAATACATTGTCCACGAGCCAACATTCAAACG
TGAAGAACCATATGAGCCTGTCCCCGTGTATTATGGACACGAAtagcttt
ttaaccaatcactGACTGACACCATTTGACTCACATACACCTCATATAAC
TAACCATTGATTGCCGAGTGCCATTGAATATACCANACGTGTAGGTCTTT
AGTccgtctttgtttttttttaacgttttgttttacttttgagATCTACA
TAGGACTCACCTTTTCCATACGTTAAAAACATAATACAGTCTCGTTCTCA
ATTAGAGTTTGTTTTTCATGGATTACACAATGTTTTATTTTATCCCAAAT
TTCagtttagatgttcttataaactgggttctaataagaAATGACAGAGC
TGGCACTCAACGTCACAACAACATTAATCAATCATCAACGACATCttacg
ttagatgaacgttgaaataacgNTTATTAGGTGTAAGAAGTATAATTTAT
ATTCGTGTGATAGGGTAGATGTTTTAGATgaggatacacgtttttttttt
tattagaacctagtttataagaacatataggctgaaattcgtcgaaaaat
taagaacatcttaagaacatgcccagcctcagtttgNTTGTTTGGGTCAT
TATTTATGTCTTATCTGATATTcactttaaagggacataaaagtagtaag
atgtaaacattgcgcgaaccatgTGTCCTTAAAGGGAACAAATAAAATca
tgtgtccaaaacaaacttgcaaaacaattgaaacaatcaaaatcagccat
atatgttttgattttgtatgcagcggatacggtttgtttacaaatttcgt
cagtacttttatgtccctttaaacacAAACACACTTTACTGTACTTTTct
ttagaaatttatttttgataaatgtGCGATTGTCAAGTAATGGATTCAAG
TCTTGTGTTTATGAAAATTTCTCTTTCTACTATTAACAACAATTAATTTT
AAAGGTGAGACTTGAACTCCTCTCACCTTTTGACTAAATACCactttgat
tatttttgaagaaataaaatGATAATAATTTCATTTGCAAATAATAGTGA
TTAAAACTGATCAAaatttacatgatttttttttggttaacATAATATTT
TTGTTAGGAATTTAATCTATACAActgcattttatttttattttttcata
tattatgtcaactctctctaattcgaacttctataatcTGGTTtagaata
ctttctataattcgaatttttctctaattcgaagaaaagttATAATTCCT
TGAACATCGAATCAGAAAGAGTGAACTAtactaataaatattttttggta
gatttttattttgttgatctAACACAAACTTAACGGACAATGCTCATAAT
TTCCTTTTTTCCGAATTAAATTTATTTGTGAAGACCAAGAGGGAAAATGA
GCCTTGGCTGTTAAGAAATCgggtataaatattttttttcagagtaTTGC
TTATAGAATTGCtctgttttgatttaatttatcTTATATTGCTAGAAATT
ATTGGATTTTAGAAGCAAAGGTTTCTGACATTATTGCCAAATAATATCAG
GTAATATCAATATTTCTTAGGAGCTGTAAATGAAAATTAATATAGGGTGA
GatattatatataatatatattttatgatttatttcgattAAAGAGATAC
GGAGAAAATTATACAATCTTTCGTCCTTCTTTATCCGATCCCTTAG

Run BLAST on NCBI

protein sequence of TCONS_00061578-protein

>TCONS_00061578-protein ID=TCONS_00061578-protein|Name=TCONS_00061578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
METNFDDGNTSQASESKPITPPANTNSEQRNDGLFFALVLIFELLCILTI
VLLVYWGHNFFGGYGWDGSGKMFNWHPLMMVLGMIVLYGNAAISYRVFNT
APKFQIKLLHAGLHGLALVFMIVGLVAVFGFHNHNNIPNLYSLHSWIGIL
TVTLFSAQYLLGFTAFLFPKFGDDLRAIALKYHQFFGRAILYLVVIASVS
GLTEKMLFAHSADYKYFIPVGNIANVIGVVLAIMAMLVEYIVHEPTFKRE
EPYEPVPVYYGHE

Run BLAST on NCBI

transcript from alignment at scaffold_36:717432..723367+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061578 ID=TCONS_00061578|Name=TCONS_00061578|organism=Clytia hemisphaerica|type=transcript|length=5936bp|location=Sequence derived from alignment at scaffold_36:717432..723367+ (Clytia hemisphaerica)
ATAATTCACTAGGGCTATTCAATGATGgttctaattttatttgaaatact
TCAGAAAGAATTTTGTGGGTTACATGTTACTCGCCTTTAAAAGTAGATTT
TACAAACCTGTTCAAAGCAGAAAACAACATCTTATCATCAAtacatcttt
ttatttttattgtagTGTTTATTAGATAAGTTAAAAAAAGAGTTGAGAAA
AAGTATGGAAACCAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAA
GTAAACCTATCACCCCACCTGCTAATACAAACAGTGAACAGAGGAATGAT
GGACTGTTCTTTgcacttgttttgattttcgaGCTGTTGTGTATACTTAC
AATAGTGTTATTGGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTT
GGGATGGTTCTGGCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTT
GGAATGATCGTTCTCTATGGAAATGGTAAGCAAAGTATTTTTATTCATAC
TTCTAATACTTAATGGGGAAATTCAGCTTAGTAAAAAATTTACTATAACT
TTACTTGGCTAGCATGTAAGGGGTTGGTTCCCCATtggaatttgaatgaa
aatgtcTTGTATTTCGATTCTTTAGTTACTAATGATACTATAATGggagc
aaaaatgtttttttattctaataaaaatgtttatcatttTAAAACTTCAT
ATATTGCTAATCATCAATCATGATCAATTTATCTTTCAGCTGCCATTTCA
TACCGTGTATTCAATACCGCACCCAAATTTCAGATCAAATTATTACACGC
TGGATTGCACGGTTTGGCTCTTGTTTTCATGATTGTTGGATTGGTTGCTG
TTTTTGGATTCCATAATCATAATAACATTCCCAACCTGTACAGTCTTCAT
AGTTGGATTGGTATTTTGACTGTCACTCTGTTCTCAGCACAGGTACTCTT
TTTATTATAAAGTAagagcctgaacctttcatgtcaaaagtcccgaaaac
actgaaaacactttgtctgaaacactttttctgaaCCTTTCAAGCTTTTT
TGGGATGTGTTGGCAAAAATCATTTCCCAGAAACACCTTACCTCTCGAGG
TGGTGTGTTTTCAGCATTTCCTGTGTTCCTGGGATTTTCCTAAATCAACT
CTCAATTTTCTCTATAAAATCCAAGCCAAAATGCATTACCTGAAACACCG
GCAAGTTTCTGAACCATTCAGTGTTTCTCTGGTGTTCAAGGTGTTTTTCA
AGAcgattttgaagctcttgcagtgTCCTGTCGGaaccaatcagataaaa
atcgGGTTTAAAATCGGGTtagaaaatggagaaaaaatcggaaaaattag
CCAGTCGGGACTTTTTTtaacagtcggcttcaacaggACATTCGGTGttt
ctaaaaacttttaaaactgaACCATTCgtgttcaaaagtgttttctgcaa
accaggtaagcaatgtgttttttaagacatgaaaggttcaggctctAAGT
CTGTGACCGCAGTTGGAGGCGACCCAAAGGTAGGGGAAGGCGCCACTCTT
TTTCCCTGTATTGCTCAACTTCCCTTGATCATTcttttagttgctgagca
ttaaGTACGAAGTCTTGGTAGGACCCGGCAtttgaacccacgaccttgcG
CTACGGTCGCTTATAGGAACattaaaatgctaaaataccAGTCTGTTTGC
TCAGGTAGATCTTTTATAGAACATTATGAAAAGGCTAGAAAAGCAAGTCT
gtttttattcgggtagtttcttataaaacattgGGCCATTCTATTTATAT
CCATACGTGGGGGTGAATGAACTTCCAAATGGGGCAGGAAATATCCCAAG
AGGTCTaggtaatttttctttcatttttccagcAGTTTGACCATgaccat
tttttgaagaaaaaaattaaatgatttGAATGTTCTGAACTTTTTAGGTT
TGAATCCTTAAAGTGTTATAAGTAAATGTTGAGTATGTTATAGGCTAAAA
AGGTGATTTGGTATTGGTTGTAGCTTAGTATCATATCAATCTAAGCTTTG
ATTTTCAATTAGTCCTAATAGGGATACAGAGCAATTGCTTTTAGGACGTT
TAGCACGtttaaagccattgaccttttacatagttgGCGAATCTCGCAAG
GAAAATGGaggaaaaaatcgatgaaaatgaccaagaaTTGCCGCTTAAAA
ATGAGGTTTGCACCCCAGAAAAATGCATTATTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATGGAACGAGTTGAAACATGCAGAAACACCAAAATCGAAGGACttcaa
aaggaaattaaagcatgtgaaaacatcatgaaagtacaaaatgaagaaat
ctCCCAACTTAAATCAAAAGACGTCGCTGTtattacaaaagaaatcaaag
aaagcctCGAAGCAAAGATGAGCATACTCGAGAAGAAGATAGAAACAAAG
ATCGAGAACATCATAATTGAAAAGAAGCAAGAGCTGAAAGAGGTTAGTTA
TGCTGAAGCTGTATCCAAACATATGAATCAACAATCGAATAAGGTGGAGA
AAATAATTCGAAGTGAAACAGTCGGTAAACAACGATCCACAGCGTGCAAC
CTAATTTTCCATGGAATCAAAGAACATTTGGAGGATCCTGAGAATACAAC
GAAAATTTACGACGAGAAATTTATCAAGTACAGAGTCCTTGGATTACAAC
TGGGTATCAAGGACATAAAAATTGTAAACACACAGAGGATTGGAGTATTC
ACGNAAATAaataatgtatgttgattcagcagattgaaataaatagaatc
ttttgtaatgaataaagaaaaatgtggagcaagatttctttcttcctttt
atttacaaatttgaaaggactcttttattaaaattttgctgacatcagtt
tcagacgagtcgggtgtatataacaccgtataatcCCTTTAACACTGCAA
AATTTTTTAACTACAGTAACATAAAAATCTATATTTTCTCCTTTTAGTAT
TTACTTGGATTCACAGCTTTCTTGTTCCCCAAGTTTGGTGACGACCTTCG
AGCTATAGCGTTGAAATACCATCAATTCTTTGGACGTGCAATTTTATATC
TTGTTGTTATTGCGTCTGTTTCCGGGTTaactgaaaaaatgttgtttgcG
TAAGTTTTATACATTCTATTTCATTTCCTCGAAAATTTCCCGAGTAAAAG
TCGAAGAAAACtgagaaatatttcaaattctaaGCTAAAGAAGATTCAAA
CTTTGGTGGATAAAATCATTAGATAGCTTTAATGACAATCTCGGAAATAT
TACTCTAACCAAACATTTTCTTCCAATTCAGACATAGTGCGGACTACAAG
TATTTCATCCCTGTTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGC
AATCATGGCAATGCTTGTCGAATACATTGTCCACGAGCCAACATTCAAAC
GTGAAGAACCATATGAGGTTTTACAATAATCaacatttttgttcaaattt
tagtTTCTCGCCTCCGATCATTCAGTATTCGTGCTTTTGAAATAACTGAA
TATAGCTTAACTAACCTGATTTATATACAAATTTCTCTGAGTGAAAATAG
agagtacatgttttttataagaattgcaCTTATAGAATATCTAGGCtcat
ttttttggcaaaaatttaagcatatgctaagcattatACCTAGTGCCTAT
CTTTTCAGAGTTATCtctttttggctggaattttacggattttcctaaaa
ttttgcTTGTATAGATGCATCCTTATAAGCATTTTTAAGCCTTGTCAAGC
CCTCGACCTAATCATCTCCGAgcctttttcgaatttttgtatgcttataa
aaaacatgtacaattGATAAAGTGGGTGAAATTAAATTGTAGAGACAGTA
GAAAAATTCACCTGTCGTTCCAGTTTAGATGCATGCTATTATATTAAACT
ATCAGACATTTGTAGGAAATTTAAATGCATGATATTTATTTCTCCTCCTT
CTTCAGCCTGTCCCCGTGTATTATGGACACGAAtagctttttaaccaatc
actGACTGACACCATTTGACTCACATACACCTCATATAACTAACCATTGA
TTGCCGAGTGCCATTGAATATACCANACGTGTAGGTCTTTAGTccgtctt
tgtttttttttaacgttttgttttacttttgagATCTACATAGGACTCAC
CTTTTCCATACGTTAAAAACATAATACAGTCTCGTTCTCAATTAGAGTTT
GTTTTTCATGGATTACACAATGTTTTATTTTATCCCAAATTTCagtttag
atgttcttataaactgggttctaataagaAATGACAGAGCTGGCACTCAA
CGTCACAACAACATTAATCAATCATCAACGACATCttacgttagatgaac
gttgaaataacgNTTATTAGGTGTAAGAAGTATAATTTATATTCGTGTGA
TAGGGTAGATGTTTTAGATgaggatacacgtttttttttttattagaacc
tagtttataagaacatataggctgaaattcgtcgaaaaattaagaacatc
ttaagaacatgcccagcctcagtttgNTTGTTTGGGTCATTATTTATGTC
TTATCTGATATTcactttaaagggacataaaagtagtaagatgtaaacat
tgcgcgaaccatgTGTCCTTAAAGGGAACAAATAAAATcatgtgtccaaa
acaaacttgcaaaacaattgaaacaatcaaaatcagccatatatgttttg
attttgtatgcagcggatacggtttgtttacaaatttcgtcagtactttt
atgtccctttaaacacAAACACACTTTACTGTACTTTTctttagaaattt
atttttgataaatgtGCGATTGTCAAGTAATGGATTCAAGTCTTGTGTTT
ATGAAAATTTCTCTTTCTACTATTAACAACAATTAATTTTAAAGGTGAGA
CTTGAACTCCTCTCACCTTTTGACTAAATACCactttgattatttttgaa
gaaataaaatGATAATAATTTCATTTGCAAATAATAGTGATTAAAACTGA
TCAAaatttacatgatttttttttggttaacATAATATTTTTGTTAGGAA
TTTAATCTATACAActgcattttatttttattttttcatatattatgtca
actctctctaattcgaacttctataatcTGGTTtagaatactttctataa
ttcgaatttttctctaattcgaagaaaagttATAATTCCTTGAACATCGA
ATCAGAAAGAGTGAACTAtactaataaatattttttggtagatttttatt
ttgttgatctAACACAAACTTAACGGACAATGCTCATAATTTCCTTTTTT
CCGAATTAAATTTATTTGTGAAGACCAAGAGGGAAAATGAGCCTTGGCTG
TTAAGAAATCgggtataaatattttttttcagagtaTTGCTTATAGAATT
GCtctgttttgatttaatttatcTTATATTGCTAGAAATTATTGGATTTT
AGAAGCAAAGGTTTCTGACATTATTGCCAAATAATATCAGGTAATATCAA
TATTTCTTAGGAGCTGTAAATGAAAATTAATATAGGGTGAGatattatat
ataatatatattttatgatttatttcgattAAAGAGATACGGAGAAAATT
ATACAATCTTTCGTCCTTCTTTATCCGATCCCTTAG

Coding sequence (CDS) from alignment at scaffold_36:717432..723367+

>TCONS_00061578 ID=TCONS_00061578|Name=TCONS_00061578|organism=Clytia hemisphaerica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_36:717432..723367+ (Clytia hemisphaerica)
ATGGAAACCAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAAGTAA
ACCTATCACCCCACCTGCTAATACAAACAGTGAACAGAGGAATGATGGAC
TGTTCTTTgcacttgttttgattttcgaGCTGTTGTGTATACTTACAATA
GTGTTATTGGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTTGGGA
TGGTTCTGGCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTTGGAA
TGATCGTTCTCTATGGAAATGCTGCCATTTCATACCGTGTATTCAATACC
GCACCCAAATTTCAGATCAAATTATTACACGCTGGATTGCACGGTTTGGC
TCTTGTTTTCATGATTGTTGGATTGGTTGCTGTTTTTGGATTCCATAATC
ATAATAACATTCCCAACCTGTACAGTCTTCATAGTTGGATTGGTATTTTG
ACTGTCACTCTGTTCTCAGCACAGTATTTACTTGGATTCACAGCTTTCTT
GTTCCCCAAGTTTGGTGACGACCTTCGAGCTATAGCGTTGAAATACCATC
AATTCTTTGGACGTGCAATTTTATATCTTGTTGTTATTGCGTCTGTTTCC
GGGTTaactgaaaaaatgttgtttgcACATAGTGCGGACTACAAGTATTT
CATCCCTGTTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGCAATCA
TGGCAATGCTTGTCGAATACATTGTCCACGAGCCAACATTCAAACGTGAA
GAACCATATGAGCCTGTCCCCGTGTATTATGGACACGAAtagATGGAAAC
CAATTTCGATGACGGCAACACTTCTCAAGCAAGTGAAAGTAAACCTATCA
CCCCACCTGCTAATACAAACAGTGAACAGAGGAATGATGGACTGTTCTTT
gcacttgttttgattttcgaGCTGTTGTGTATACTTACAATAGTGTTATT
GGTATATTGGGGTCATAACTTTTTCGGAGGATATGGTTGGGATGGTTCTG
GCAAAATGTTTAATTGGCATCCCTTAATGATGGTTCTTGGAATGATCGTT
CTCTATGGAAATGCTGCCATTTCATACCGTGTATTCAATACCGCACCCAA
ATTTCAGATCAAATTATTACACGCTGGATTGCACGGTTTGGCTCTTGTTT
TCATGATTGTTGGATTGGTTGCTGTTTTTGGATTCCATAATCATAATAAC
ATTCCCAACCTGTACAGTCTTCATAGTTGGATTGGTATTTTGACTGTCAC
TCTGTTCTCAGCACAGTATTTACTTGGATTCACAGCTTTCTTGTTCCCCA
AGTTTGGTGACGACCTTCGAGCTATAGCGTTGAAATACCATCAATTCTTT
GGACGTGCAATTTTATATCTTGTTGTTATTGCGTCTGTTTCCGGGTTaac
tgaaaaaatgttgtttgcACATAGTGCGGACTACAAGTATTTCATCCCTG
TTGGAAACATTGCTAACGTTATTGGAGTGGTTCTGGCAATCATGGCAATG
CTTGTCGAATACATTGTCCACGAGCCAACATTCAAACGTGAAGAACCATA
TGAGCCTGTCCCCGTGTATTATGGACACGAAtagATGGAAACCAATTTCG
ATGACGGCAACACTTCTCAAGCAAGTGAAAGTAAACCTATCACCCCACCT
GCTAATACAAACAGTGAACAGAGGAATGATGGACTGTTCTTTgcacttgt
tttgattttcgaGCTGTTGTGTATACTTACAATAGTGTTATTGGTATATT
GGGGTCATAACTTTTTCGGAGGATATGGTTGGGATGGTTCTGGCAAAATG
TTTAATTGGCATCCCTTAATGATGGTTCTTGGAATGATCGTTCTCTATGG
AAATGCTGCCATTTCATACCGTGTATTCAATACCGCACCCAAATTTCAGA
TCAAATTATTACACGCTGGATTGCACGGTTTGGCTCTTGTTTTCATGATT
GTTGGATTGGTTGCTGTTTTTGGATTCCATAATCATAATAACATTCCCAA
CCTGTACAGTCTTCATAGTTGGATTGGTATTTTGACTGTCACTCTGTTCT
CAGCACAGTATTTACTTGGATTCACAGCTTTCTTGTTCCCCAAGTTTGGT
GACGACCTTCGAGCTATAGCGTTGAAATACCATCAATTCTTTGGACGTGC
AATTTTATATCTTGTTGTTATTGCGTCTGTTTCCGGGTTaactgaaaaaa
tgttgtttgcACATAGTGCGGACTACAAGTATTTCATCCCTGTTGGAAAC
ATTGCTAACGTTATTGGAGTGGTTCTGGCAATCATGGCAATGCTTGTCGA
ATACATTGTCCACGAGCCAACATTCAAACGTGAAGAACCATATGAGCCTG
TCCCCGTGTATTATGGACACGAAtagATGGAAACCAATTTCGATGACGGC
AACACTTCTCAAGCAAGTGAAAGTAAACCTATCACCCCACCTGCTAATAC
AAACAGTGAACAGAGGAATGATGGACTGTTCTTTgcacttgttttgattt
tcgaGCTGTTGTGTATACTTACAATAGTGTTATTGGTATATTGGGGTCAT
AACTTTTTCGGAGGATATGGTTGGGATGGTTCTGGCAAAATGTTTAATTG
GCATCCCTTAATGATGGTTCTTGGAATGATCGTTCTCTATGGAAATGCTG
CCATTTCATACCGTGTATTCAATACCGCACCCAAATTTCAGATCAAATTA
TTACACGCTGGATTGCACGGTTTGGCTCTTGTTTTCATGATTGTTGGATT
GGTTGCTGTTTTTGGATTCCATAATCATAATAACATTCCCAACCTGTACA
GTCTTCATAGTTGGATTGGTATTTTGACTGTCACTCTGTTCTCAGCACAG
TATTTACTTGGATTCACAGCTTTCTTGTTCCCCAAGTTTGGTGACGACCT
TCGAGCTATAGCGTTGAAATACCATCAATTCTTTGGACGTGCAATTTTAT
ATCTTGTTGTTATTGCGTCTGTTTCCGGGTTaactgaaaaaatgttgttt
gcACATAGTGCGGACTACAAGTATTTCATCCCTGTTGGAAACATTGCTAA
CGTTATTGGAGTGGTTCTGGCAATCATGGCAATGCTTGTCGAATACATTG
TCCACGAGCCAACATTCAAACGTGAAGAACCATATGAGCCTGTCCCCGTG
TATTATGGACACGAAtagATGGAAACCAATTTCGATGACGGCAACACTTC
TCAAGCAAGTGAAAGTAAACCTATCACCCCACCTGCTAATACAAACAGTG
AACAGAGGAATGATGGACTGTTCTTTgcacttgttttgattttcgaGCTG
TTGTGTATACTTACAATAGTGTTATTGGTATATTGGGGTCATAACTTTTT
CGGAGGATATGGTTGGGATGGTTCTGGCAAAATGTTTAATTGGCATCCCT
TAATGATGGTTCTTGGAATGATCGTTCTCTATGGAAATGCTGCCATTTCA
TACCGTGTATTCAATACCGCACCCAAATTTCAGATCAAATTATTACACGC
TGGATTGCACGGTTTGGCTCTTGTTTTCATGATTGTTGGATTGGTTGCTG
TTTTTGGATTCCATAATCATAATAACATTCCCAACCTGTACAGTCTTCAT
AGTTGGATTGGTATTTTGACTGTCACTCTGTTCTCAGCACAGTATTTACT
TGGATTCACAGCTTTCTTGTTCCCCAAGTTTGGTGACGACCTTCGAGCTA
TAGCGTTGAAATACCATCAATTCTTTGGACGTGCAATTTTATATCTTGTT
GTTATTGCGTCTGTTTCCGGGTTaactgaaaaaatgttgtttgcACATAG
TGCGGACTACAAGTATTTCATCCCTGTTGGAAACATTGCTAACGTTATTG
GAGTGGTTCTGGCAATCATGGCAATGCTTGTCGAATACATTGTCCACGAG
CCAACATTCAAACGTGAAGAACCATATGAGCCTGTCCCCGTGTATTATGG
ACACGAAtag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038637	XLOC_038637	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061578-protein	TCONS_00061578-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:717432..723367 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46175	1.68198	0.905568	1.54493	52.6319	45.374	60.3632	57.7764	42.3899	43.2285	42.5545	42.1836	10.017	8.64394	5.42074	4.43641	4.23423	5.1343	6.90664	7.02678	1.76589	1.27711	2.81012	1.49716	2.18412	3.08232	0.787069	0	0.522619	0.32884

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR006593	Cyt_b561/ferric_Rdtase_TM

Blast

[Close]

BLAST of TCONS_00061578 vs. Swiss-Prot (Human)
Match: CYAC3 (Cytochrome b ascorbate-dependent protein 3 OS=Homo sapiens GN=CYB561A3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.143e-43
Identity = 98/226 (43.36%), Postives = 134/226 (59.29%), Query Frame = 1

Query:  298 DGLFFALVLIFELLCILTIVLLVYWGHNFFGGYGWDGSGKMFNWHPLMMVLGMIVLYGNAAISYRVFNT--APKFQIKXXXXXXXXXXXVFMIVGLVAVFGFHNHNNIPNLYSLHSWIGILTVTLFSAQYLLGFTAFLFPKFGDDLRAIALKYHQFFGRAILYLVVIASVSGLTEKMLFA---HSADYKYFIPVGNIANVIGVVLAIMAMLVEYIVHEPTFKREEP 960
             G F+   L+   L  + I+  +YW   + GG+ W+GS  MFNWHP++MV GM+V YG A++ YR+  +   PK   KLLHA LH +A V  +VGLVAVF FHNH    NLYSLHSW+GI TV LF+ Q+ LGF  FL P     LR++    H FFG AIL L + + +SG+ EK+ F+    +  Y         AN  G+++    +LV YI+   ++KR EP
Sbjct:    3 SGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWLGITTVFLFACQWFLGFAVFLLPWASMWLRSLLKPIHVFFGAAILSLSIASVISGINEKLFFSLKNTTRPYHSLPSEAVFANSTGMLVVAFGLLVLYILLASSWKRPEP 228

The following BLAST results are available for this feature:

BLAST of TCONS_00061578 vs. Swiss-Prot (Human)

BLAST of TCONS_00061578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CYAC3	1.143e-43	43.36	Cytochrome b ascorbate-dependent protein 3 OS=Homo...	[more]

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TCONS_00061578 (transcript) - C. hemisphaerica