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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061576 ID=TCONS_00061576|Name=TCONS_00061576|organism=Clytia hemisphaerica|type=transcript|length=3104bpRun BLAST on NCBI protein sequence of Seven transmembrane protein >TCONS_00061576-protein ID=TCONS_00061576-protein|Name=Seven transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=604bp MTTVDSSVSCTFSDALYVTADDDKSSKEDASSEYFTANTHQSTSIDDSGLRun BLAST on NCBI transcript from alignment at scaffold_36:679179..700113+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061576 ID=TCONS_00061576|Name=TCONS_00061576|organism=Clytia hemisphaerica|type=transcript|length=20935bp|location=Sequence derived from alignment at scaffold_36:679179..700113+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:679179..700113+ >TCONS_00061576 ID=TCONS_00061576|Name=TCONS_00061576|organism=Clytia hemisphaerica|type=CDS|length=18150bp|location=Sequence derived from alignment at scaffold_36:679179..700113+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061576 vs. Swiss-Prot (Human)
Match: BNIP2 (BCL2/adenovirus E1B 19 kDa protein-interacting protein 2 OS=Homo sapiens GN=BNIP2 PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.355e-35 Identity = 63/177 (35.59%), Postives = 110/177 (62.15%), Query Frame = 1
Query: 1393 RFVVVNVAGQQRIVDMKLIEDYLKILTHGGHHTVAEECRVIVVFNAYYLPKRNIPKYNIVMEQLFYYCVHAVDLMVMDSYEIVFFNSAMNGTNIPSRQLIKQCYDMIQYRLKKNLQNIYFVHPSLLLKTVLKFTHFFVSAKFARKMHYVKNLKALKSYLPLEYIFVSSEIQQLERKF 1923
R+ + + Q VDMK IE Y K+++HGG++ + IVVF ++P+ + P Y +M+ LF Y + ++L+V ++Y IV+ N A +PS +++CY I RL+KNL+++ VHPS ++T+L T F+S+KF++K+ YV NL L +P+EY+ + I+Q++++
Sbjct: 129 RWRMFRIGEQDHRVDMKAIEPYKKVISHGGYY--GDGLNAIVVFAVCFMPESSQPNYRYLMDNLFKYVIGTLELLVAENYMIVYLNGATTRRKMPSLGWLRKCYQQIDRRLRKNLKSLIIVHPSWFIRTLLAVTRPFISSKFSQKIRYVFNLAELAELVPMEYVGIPECIKQVDQEL 303 The following BLAST results are available for this feature:
BLAST of TCONS_00061576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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