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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061571 ID=TCONS_00061571|Name=TCONS_00061571|organism=Clytia hemisphaerica|type=transcript|length=3798bp
GCACCACCATCCCCGAATTTCCAAAGGAGCTTCCATTTGAATGCATTCCA
GAGAACAACGACAAGATGAAGGAGTGGCTGCTTGATTATTTTGCATCGTC
TACTTTAAATACCTGCCCACACCAGCGGCTGCCACAAATGGATGGTCCAC
CGGTTGAGATCCATCTTAAGCCTAACGCTGTTCCAAAAGCTGTGCACACT
CCAGCATCGATACCAATTCATTGGCAGGACCAAGTGCACAAGGATCTCCT
TCGTGACGAAGCATTGGGTGTAATCGAGAGAGTCCCTTATGGCGAGCCAG
TGAAATGGTGTCACCGTATGGTAGTGACACGAAAGCACGATGGGTCCCCA
AGGCGGACTGTTGACCTATCTCCACTTAACAAACACTGTCAAAGAGAAAC
GTTTGCATCTGCTTCACCATTCCAGTCAGCTAGAAGAGTACCAACCAACA
CGTGGAAGACTGTCAACGACGCATGGAACGGTTTCCATAGTGTACCTCTC
GAGGAATCCCACAGGCACCTTACCACTTTCATCACACCCTTTGGCCGCTG
GAGGTACTGTGCAACCCCACAAGGATTTTCTGGTTCCGGTGATGGTTACA
ACCGTCGTTTCGACCAAGTCCTCTCTGATTTTGAAAGGAAAGAGCGAGTT
ACTGACGACGTCCTGCACTATGACACGTCACTTGAAGAACATTGGTGGAG
GACGATGGAGATGTTAATTACATCCGGCAAATCAGGAATTATCATGAATC
CAGATAAGTTCCAGTTTGCCCAACGTACTGTTGACTTTGCTGGATTTCGT
ATTTCCGATTCATCCATTGCTCCGTTGCCAAAGTACACCGATGCTATACG
CAATTTCCCTACGCCCAAATCAACCACTGACATCCGGAGTTGGTTTGGCT
TAGTGAACCAAGTATCAAACTACGCTCAGCTCCGCGATCACATGGAGCCT
TTCAGGCGATTCCTAAGTCCACGTCAGATGTTCCAATGGACCCCCGAACT
CGACAAAGCATTCCGTCAGTCCAAAGAATCTATCATCCAAGCGATCAATG
CAGGAGTCATNTTCCAATGGACCCCCGAACTCGACAAAGCATTCCGTCAG
TCCAAAGAATCTATCATCCAAGCAATCAATGCAGGAGTCATCATATTTGA
TCCTACACGAAAGACCTGTCTTCGACCCGATTGGTCTCGCAAAGGCATCG
GCTACTTCTTGTACCANAAGGAGTCATCATATTTGATCCTACACGAAAGA
CCTGTCTTCGACCCGATTGGTCTCGCAAAGGTATCGGCTACTTCTTGTAC
CAACAACATTGTGAGTGTGACTCAGACACACCGGATTGCTGTAATTTGGG
CTGGAGGATCGTTCTCGCAGGATCCCGTTTCCTACAGTCTTCAGAGCAAA
GATACGCTCCCATCGAGGGGGAGGCCCTAGCAATTGCGTGGTCGCTTGAA
CAGACCAAGTATTTTACTCAAGGCTGCCCATCGCTGATAGTCGTCACTGA
CCACAAACCCTTGGTCAAGATTCTTGGAGATCNTGAGGGGGAGGCCCTAG
CAATTGCGTGGTCGCTTGAACAGACCAAGTATTTTACTCAAGGCTGCCCA
TCGCTGATAGTCGTCACTGACCACAAACCCTTGGTCAAGATTCTTGGAGA
TCGTACATTAGATGAAATAGCAAACGATCNCGTCACTGACCACAAACCCT
TGGTCACGATTCTTGGAGATCGTACATTAGATGAAATAGCAAACGATCGC
ATCTTTCGCCTGAAACAACGCACCCTGCCCTGGTCCTTCAGGATTTTTCA
CCTACCAGGCAAAACCAATCTAGCTTCTGACGCAACGTCACGTTACCCCT
CATCCGTCATCGGGTTACTAACAGTCGCTGATCAGATTGAAAATGCCATC
AACGCTGCTATTCGAGTCGATACAAAGGAAACATTTAGCATCAGTTGGGA
TCAACTAGTTGCCGAAACAGCCAAGGATCAACCACTTGCTCTGCTTCTTA
AGTACGTCCAAACTGGTTTCAAAGCGATTCAACCTGATGAGATTGCAATA
GTTTCTGAATACTGGAAATATCGAGATTCACTATATATTCTTGATGATGT
TCTCCTTTATCACGATCGAGTTGTTGTGCCCCCATCACTCCGTCAAACCG
TACTATCCATCCTTCATTCAGCAAACCAAGGGGTGACTGTCATGTCTTCA
CGTGTTCAATCGACAGTCTTTTGGCCAGGTATATCAAAGGACATTGAAGT
TACTCGTGCCAGCTGCGCCTCGTGTCACCGCAATGCCCCATCGCAACCTG
CCATGCCTACTGCGCCTCCATCCACACCGTCGACTCCATTCGAGATGATC
TTCGCTGATTTCTTTTCATATGCTGGCATTCACTACCTACTAGCTGGAGA
TAGATTATCTGGCTGGGTTGAAGTTTACCGCTCCATTCATGNACTTCGCT
GATTTCTTTTCGTATGCTGGCATTCACTACCTACTAGCTGGAGAAAGATT
ATCTGGCTGGGTTGAAGTTTACCGCTCCATTCATGGTAGTAGCAAATCTG
GTGCCAAGGGACTCATTGCTGCGTTACGCTCATTGTTCGCTACATTTGGC
GTTCCTGAAGAGCTTTCCAGCGATGGCGGCCCAGAATTTGCCGCTGGTGA
GACACAATCCTTCTTGAAGAAGTGGGGTGTACATCATCGCATCTCATCCG
CTTATTTTGCCCAATCTAATGGTCGTGCTGAAGTTGGAGTGAAGAAATGC
AAACGTTTGCTAATGGAAAACATTTCTCCCAATGGATCGCTAGACAACAA
CAAATTCCTCAGAGCCCTTCTCCAAACACGCAATACCCCCGATGCAGATT
GCAAGGTCAAGGTCGGCAAGCCACTCCGTGACGCCTTATCATTCCTTACC
CGGCTACCCAAGTTTGCAAATCCTTCGACTCGGTCAACATGGCGGGAGGC
TTGGAACAAGAAGGAAGAGGCCATGTTGGCTCGCTTTTCTCGATCGTCCA
AACGACTGAACCAATCTACTCGTAATCTCCAACCATTATCTGCTGGTGAT
CATGTCCTTATCCAGAATCAGCATGGCAGCCATCCTAACAAATGGGACAA
GTCAGGTGTCGTTGTTGAGGTTCGTGGATTCGACCAATACGTTGTTAAGG
TTGATGGATCAAATCGTGTGACACTTCGTAACCGACGATTTCTGCGTAAG
TTCACGCCTATCTCTTCAGACATCCAACCTACCACGAGGATCAATGTACT
GCCAGTAGCACCTGTCCGGAATACTGTTGCCACTCTTCCGCTTAGTCTAC
CTGACACCACATCAATGGGAGATACCGCACCTGCAACAACTGTTGCTGAT
GCTCAGGAAACCGTTCATTCCGATATCCCAGCCCGCCAACATACTACACC
TGAAGAAGTACAGAATACATCCCAGCCTTCCGTATCTGATGCTCCTACAA
GTACGCACTTACGGCCGCGTCGCTCGATAAAACCTCCTCCGAGATACATC
CCAGAGTCTGGAACCTGGTCTTGAGTGATGTGTTGGAAGGTTAACACGTA
TTTTCTATGCGATGGTAGTAATGAGTTCTCTCTATATTGAGCTTTTCTAT
TGATTGATGTGTGATGTTATTATTGAATTGTTTTGGCATGTTGGATATGG
TTTTGGCCATGATTGGATTGATTTATTGTGGCTTTTGTACTACGATGGGT
AAAATTTCCCCCTAGTGTTGACACTTCTATTGACTATCGGATTTTTACCC
GATACATATGTGGTCatgtatattttttatgactgtTGAACACTGAGC Run BLAST on NCBI protein sequence of TCONS_00061571-protein >TCONS_00061571-protein ID=TCONS_00061571-protein|Name=TCONS_00061571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
TTIPEFPKELPFECIPENNDKMKEWLLDYFASSTLNTCPHQRLPQMDGPP
VEIHLKPNAVPKAVHTPASIPIHWQDQVHKDLLRDEALGVIERVPYGEPV
KWCHRMVVTRKHDGSPRRTVDLSPLNKHCQRETFASASPFQSARRVPTNT
WKTVNDAWNGFHSVPLEESHRHLTTFITPFGRWRYCATPQGFSGSGDGYN
RRFDQVLSDFERKERVTDDVLHYDTSLEEHWWRTMEMLITSGKSGIIMNP
DKFQFAQRTVDFAGFRISDSSIAPLPKYTDAIRNFPTPKSTTDIRSWFGL
VNQVSNYAQLRDHMEPFRRFLSPRQMFQWTPELDKAFRQSKESIIQAINA
GVXFQWTPELDKAFRQSKESIIQAINAGVIIFDPTRKTCLRPDWSRKGIG
YFLYXKESSYLILHERPVFDPIGLAKVSATSCTNNIVSVTQTHRIAVIWA
GGSFSQDPVSYSLQSKDTLPSRGRP Run BLAST on NCBI transcript from alignment at scaffold_36:654669..658541+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061571 ID=TCONS_00061571|Name=TCONS_00061571|organism=Clytia hemisphaerica|type=transcript|length=3873bp|location=Sequence derived from alignment at scaffold_36:654669..658541+ (Clytia hemisphaerica)
GCACCACCATCCCCGAATTTCCAAAGGAGCTTCCATTTGAATGCATTCCA
GAGAACAACGACAAGATGAAGGAGTGGCTGCTTGATTATTTTGCATCGTC
TACTTTAAATACCTGCCCACACCAGCGGCTGCCACAAATGGATGGTCCAC
CGGTTGAGATCCATCTTAAGCCTAACGCTGTTCCAAAAGCTGTGCACACT
CCAGCATCGATACCAATTCATTGGCAGGACCAAGTGCACAAGGATCTCCT
TCGTGACGAAGCATTGGGTGTAATCGAGAGAGTCCCTTATGGCGAGCCAG
TGAAATGGTGTCACCGTATGGTAGTGACACGAAAGCACGATGGGTCCCCA
AGGCGGACTGTTGACCTATCTCCACTTAACAAACACTGTCAAAGAGAAAC
GTTTGCATCTGCTTCACCATTCCAGTCAGCTAGAAGAGTACCAACCAACA
CGTGGAAGACTGTCAACGACGCATGGAACGGTTTCCATAGTGTACCTCTC
GAGGAATCCCACAGGCACCTTACCACTTTCATCACACCCTTTGGCCGCTG
GAGGTACTGTGCAACCCCACAAGGATTTTCTGGTTCCGGTGATGGTTACA
ACCGTCGTTTCGACCAAGTCCTCTCTGATTTTGAAAGGAAAGAGCGAGTT
ACTGACGACGTCCTGCACTATGACACGTCACTTGAAGAACATTGGTGGAG
GACGATGGAGATGTTAATTACATCCGGCAAATCAGGAATTATCATGAATC
CAGATAAGTTCCAGTTTGCCCAACGTACTGTTGACTTTGCTGGATTTCGT
ATTTCCGATTCATCCATTGCTCCGTTGCCAAAGTACACCGATGCTATACG
CAATTTCCCTACGCCCAAATCAACCACTGACATCCGGAGTTGGTTTGGCT
TAGTGAACCAAGTATCAAACTACGCTCAGCTCCGCGATCACATGGAGCCT
TTCAGGCGATTCCTAAGTCCACGTCAGATGTTCCAATGGACCCCCGAACT
CGACAAAGCATTCCGTCAGTCCAAAGAATCTATCATCCAAGCGATCAATG
CAGGAGTCATNTTCCAATGGACCCCCGAACTCGACAAAGCATTCCGTCAG
TCCAAAGAATCTATCATCCAAGCAATCAATGCAGGAGTCATCATATTTGA
TCCTACACGAAAGACCTGTCTTCGACCCGATTGGTCTCGCAAAGGCATCG
GCTACTTCTTGTACCANAAGGAGTCATCATATTTGATCCTACACGAAAGA
CCTGTCTTCGACCCGATTGGTCTCGCAAAGGTATCGGCTACTTCTTGTAC
CAACAACATTGTGAGTGTGACTCAGACACACCGGATTGCTGTAATTTGGG
CTGGAGGATCGTTCTCGCAGGATCCCGTTTCCTACAGTCTTCAGAGCAAA
GATACGCTCCCATCGAGGGGGAGGCCCTAGCAATTGCGTGGTCGCTTGAA
CAGACCAAGTATTTTACTCAAGGCTGCCCATCGCTGATAGTCGTCACTGA
CCACAAACCCTTGGTCAAGATTCTTGGAGATCNTGAGGGGGAGGCCCTAG
CAATTGCGTGGTCGCTTGAACAGACCAAGTATTTTACTCAAGGCTGCCCA
TCGCTGATAGTCGTCACTGACCACAAACCCTTGGTCAAGATTCTTGGAGA
TCGTACATTAGATGAAATAGCAAACGATCNCGTCACTGACCACAAACCCT
TGGTCACGATTCTTGGAGATCGTACATTAGATGAAATAGCAAACGATCGC
ATCTTTCGCCTGAAACAACGCACCCTGCCCTGGTCCTTCAGGATTTTTCA
CCTACCAGGCAAAACCAATCTNATAATCTTTCGCCTGAAACAACGCACCC
TGCCCTGGTCCTTCCGGATTTTTCACCTACCAGGCAAAACCAATCTAGCT
TCTGACGCAACGTCACGTTACCCCTCATCCGTCATCGGGTTACTAACAGT
CGCTGATCAGATTGAAAATGCCATCAACGCTGCTATTCGAGTCGATACAA
AGGAAACATTTAGCATCAGTTGGGATCAACTAGTTGCCGAAACAGCCAAG
GATCAACCACTTGCTCTGCTTCTTAAGTACGTCCAAACTGGTTTCAAAGC
GATTCAACCTGATGAGATTGCAATAGTTTCTGAATACTGGAAATATCGAG
ATTCACTATATATTCTTGATGATGTTCTCCTTTATCACGATCGAGTTGTT
GTGCCCCCATCACTCCGTCAAACCGTACTATCCATCCTTCATTCAGCAAA
CCAAGGGGTGACTGTCATGTCTTCACGTGTTCAATCGACAGTCTTTTGGC
CAGGTATATCAAAGGACATTGAAGTTACTCGTGCCAGCTGCGCCTCGTGT
CACCGCAATGCCCCATCGCAACCTGCCATGCCTACTGCGCCTCCATCCAC
ACCGTCGACTCCATTCGAGATGATCTTCGCTGATTTCTTTTCATATGCTG
GCATTCACTACCTACTAGCTGGAGATAGATTATCTGGCTGGGTTGAAGTT
TACCGCTCCATTCATGNACTTCGCTGATTTCTTTTCGTATGCTGGCATTC
ACTACCTACTAGCTGGAGAAAGATTATCTGGCTGGGTTGAAGTTTACCGC
TCCATTCATGGTAGTAGCAAATCTGGTGCCAAGGGACTCATTGCTGCGTT
ACGCTCATTGTTCGCTACATTTGGCGTTCCTGAAGAGCTTTCCAGCGATG
GCGGCCCAGAATTTGCCGCTGGTGAGACACAATCCTTCTTGAAGAAGTGG
GGTGTACATCATCGCATCTCATCCGCTTATTTTGCCCAATCTAATGGTCG
TGCTGAAGTTGGAGTGAAGAAATGCAAACGTTTGCTAATGGAAAACATTT
CTCCCAATGGATCGCTAGACAACAACAAATTCCTCAGAGCCCTTCTCCAA
ACACGCAATACCCCCGATGCAGATTGCAAGGTCAAGGTCGGCAAGCCACT
CCGTGACGCCTTATCATTCCTTACCCGGCTACCCAAGTTTGCAAATCCTT
CGACTCGGTCAACATGGCGGGAGGCTTGGAACAAGAAGGAAGAGGCCATG
TTGGCTCGCTTTTCTCGATCGTCCAAACGACTGAACCAATCTACTCGTAA
TCTCCAACCATTATCTGCTGGTGATCATGTCCTTATCCAGAATCAGCATG
GCAGCCATCCTAACAAATGGGACAAGTCAGGTGTCGTTGTTGAGGTTCGT
GGATTCGACCAATACGTTGTTAAGGTTGATGGATCAAATCGTGTGACACT
TCGTAACCGACGATTTCTGCGTAAGTTCACGCCTATCTCTTCAGACATCC
AACCTACCACGAGGATCAATGTACTGCCAGTAGCACCTGTCCGGAATACT
GTTGCCACTCTTCCGCTTAGTCTACCTGACACCACATCAATGGGAGATAC
CGCACCTGCAACAACTGTTGCTGATGCTCAGGAAACCGTTCATTCCGATA
TCCCAGCCCGCCAACATACTACACCTGAAGAAGTACAGAATACATCCCAG
CCTTCCGTATCTGATGCTCCTACAAGTACGCACTTACGGCCGCGTCGCTC
GATAAAACCTCCTCCGAGATACATCCCAGAGTCTGGAACCTGGTCTTGAG
TGATGTGTTGGAAGGTTAACACGTATTTTCTATGCGATGGTAGTAATGAG
TTCTCTCTATATTGAGCTTTTCTATTGATTGATGTGTGATGTTATTATTG
AATTGTTTTGGCATGTTGGATATGGTTTTGGCCATGATTGGATTGATTTA
TTGTGGCTTTTGTACTACGATGGGTAAAATTTCCCCCTAGTGTTGACACT
TCTATTGACTATCGGATTTTTACCCGATACATATGTGGTCatgtatattt
tttatgactgtTGAACACTGAGC Coding sequence (CDS) from alignment at scaffold_36:654669..658541+ >TCONS_00061571 ID=TCONS_00061571|Name=TCONS_00061571|organism=Clytia hemisphaerica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_36:654669..658541+ (Clytia hemisphaerica)
ACCACCATCCCCGAATTTCCAAAGGAGCTTCCATTTGAATGCATTCCAGA
GAACAACGACAAGATGAAGGAGTGGCTGCTTGATTATTTTGCATCGTCTA
CTTTAAATACCTGCCCACACCAGCGGCTGCCACAAATGGATGGTCCACCG
GTTGAGATCCATCTTAAGCCTAACGCTGTTCCAAAAGCTGTGCACACTCC
AGCATCGATACCAATTCATTGGCAGGACCAAGTGCACAAGGATCTCCTTC
GTGACGAAGCATTGGGTGTAATCGAGAGAGTCCCTTATGGCGAGCCAGTG
AAATGGTGTCACCGTATGGTAGTGACACGAAAGCACGATGGGTCCCCAAG
GCGGACTGTTGACCTATCTCCACTTAACAAACACTGTCAAAGAGAAACGT
TTGCATCTGCTTCACCATTCCAGTCAGCTAGAAGAGTACCAACCAACACG
TGGAAGACTGTCAACGACGCATGGAACGGTTTCCATAGTGTACCTCTCGA
GGAATCCCACAGGCACCTTACCACTTTCATCACACCCTTTGGCCGCTGGA
GGTACTGTGCAACCCCACAAGGATTTTCTGGTTCCGGTGATGGTTACAAC
CGTCGTTTCGACCAAGTCCTCTCTGATTTTGAAAGGAAAGAGCGAGTTAC
TGACGACGTCCTGCACTATGACACGTCACTTGAAGAACATTGGTGGAGGA
CGATGGAGATGTTAATTACATCCGGCAAATCAGGAATTATCATGAATCCA
GATAAGTTCCAGTTTGCCCAACGTACTGTTGACTTTGCTGGATTTCGTAT
TTCCGATTCATCCATTGCTCCGTTGCCAAAGTACACCGATGCTATACGCA
ATTTCCCTACGCCCAAATCAACCACTGACATCCGGAGTTGGTTTGGCTTA
GTGAACCAAGTATCAAACTACGCTCAGCTCCGCGATCACATGGAGCCTTT
CAGGCGATTCCTAAGTCCACGTCAGATGTTCCAATGGACCCCCGAACTCG
ACAAAGCATTCCGTCAGTCCAAAGAATCTATCATCCAAGCGATCAATGCA
GGAGTCATNTTCCAATGGACCCCCGAACTCGACAAAGCATTCCGTCAGTC
CAAAGAATCTATCATCCAAGCAATCAATGCAGGAGTCATCATATTTGATC
CTACACGAAAGACCTGTCTTCGACCCGATTGGTCTCGCAAAGGCATCGGC
TACTTCTTGTACCANAAGGAGTCATCATATTTGATCCTACACGAAAGACC
TGTCTTCGACCCGATTGGTCTCGCAAAGGTATCGGCTACTTCTTGTACCA
ACAACATTGTGAGTGTGACTCAGACACACCGGATTGCTGTAATTTGGGCT
GGAGGATCGTTCTCGCAGGATCCCGTTTCCTACAGTCTTCAGAGCAAAGA
TACGCTCCCATCGAGGGGGAGGCCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061571-exon-scaffold_36-1491911889:654669..656476 | TCONS_00061571-exon-scaffold_36-1491911889:654669..656476 | Clytia hemisphaerica | exon |
| TCONS_00061571-exon-scaffold_36-1510915933:654669..656476 | TCONS_00061571-exon-scaffold_36-1510915933:654669..656476 | Clytia hemisphaerica | exon |
| TCONS_00061571-exon-scaffold_36-1575043694:654669..656476 | TCONS_00061571-exon-scaffold_36-1575043694:654669..656476 | Clytia hemisphaerica | exon |
| TCONS_00061571-exon-scaffold_36-1491911889:656552..658541 | TCONS_00061571-exon-scaffold_36-1491911889:656552..658541 | Clytia hemisphaerica | exon |
| TCONS_00061571-exon-scaffold_36-1510915933:656552..658541 | TCONS_00061571-exon-scaffold_36-1510915933:656552..658541 | Clytia hemisphaerica | exon |
| TCONS_00061571-exon-scaffold_36-1575043694:656552..658541 | TCONS_00061571-exon-scaffold_36-1575043694:656552..658541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:654669..658541 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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