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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061567 ID=TCONS_00061567|Name=TCONS_00061567|organism=Clytia hemisphaerica|type=transcript|length=3049bpRun BLAST on NCBI protein sequence of TCONS_00061567-protein >TCONS_00061567-protein ID=TCONS_00061567-protein|Name=TCONS_00061567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp MAYSSTKFALDKKRTGDESVKMKNKTNVKVTTVDAELEFPIASNATGKQLRun BLAST on NCBI transcript from alignment at scaffold_36:592423..605012+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061567 ID=TCONS_00061567|Name=TCONS_00061567|organism=Clytia hemisphaerica|type=transcript|length=12590bp|location=Sequence derived from alignment at scaffold_36:592423..605012+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:592423..605012+ >TCONS_00061567 ID=TCONS_00061567|Name=TCONS_00061567|organism=Clytia hemisphaerica|type=CDS|length=15903bp|location=Sequence derived from alignment at scaffold_36:592423..605012+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061567 vs. Swiss-Prot (Human)
Match: RADI (Radixin OS=Homo sapiens GN=RDX PE=1 SV=1) HSP 1 Score: 465.692 bits (1197), Expect = 2.941e-151 Identity = 215/298 (72.15%), Postives = 256/298 (85.91%), Query Frame = 1
Query: 286 DAELEFPIASNATGKQLFDQVVKTIGIREIWFFGLQYEDGKGYTAWLKLNKKVSAQDIKRESKDAPYEFKFLAKFHPEEVEGELIQMITQKLFFSQVKEGVLNETVYCPPETSVLLASYAMQAKYGDYDEASYKVGD-SKEKLLPEKVKEQHSLTDAEWEERIIQWWKQLNDMMKEDARVEYLKIAQDLEMYGVNYFEIKNKKGTELFLGVDALGLNIYEKEDRLTPKIGFPWSEIRNISFSDKRFNIKPIDKKSPDFIFYVTRLRINKRILSLCVGNHELYMRRRKADTIEVQQMKS 1176
DAELEF I N TGKQLFDQVVKT+G+RE+WFFGLQY D KGY+ WLKLNKKV+ QD+K+E+ P +FKF AKF PE+V ELIQ ITQ+LFF QVKE +LN+ +YCPPET+VLLASYA+QAKYGDY++ +K G + ++LLP++V EQH LT +WEERI W ++ M++ED+ +EYLKIAQDLEMYGVNYFEIKNKKGTEL+LGVDALGLNIYE +D+LTPKIGFPWSEIRNISF+DK+F IKPIDKK+PDF+FY RLRINKRIL+LC+GNHELYMRRRK DTIEVQQMK+
Sbjct: 13 DAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKEN---PLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKPDTIEVQQMKA 307 HSP 2 Score: 92.4337 bits (228), Expect = 4.338e-19 Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 1660 ETDEGDED-AENVGKDFEEGENDNR-ELEYTSAADKNDTLRAQLKSLGEELNLARDEGKLSREDLLHEGNLKEGRDKYKTLRQIRQGNTRQRIDEFECM 1950
E DE DE+ AE + EG ++R E E + KN+ ++ QL++L EL ARDE K ++ D+LH N+K GRDKYKTLRQIRQGNT+QRIDEFE M
Sbjct: 485 EHDEHDENNAEASAELSNEGVMNHRSEEERVTETQKNERVKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRDKYKTLRQIRQGNTKQRIDEFEAM 583 The following BLAST results are available for this feature:
BLAST of TCONS_00061567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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