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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061560 ID=TCONS_00061560|Name=TCONS_00061560|organism=Clytia hemisphaerica|type=transcript|length=3122bpRun BLAST on NCBI protein sequence of TCONS_00061560-protein >TCONS_00061560-protein ID=TCONS_00061560-protein|Name=TCONS_00061560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp MAPIRSMVKKQKQNKDKTDISRKEGSVEKETTSTKWKNKERVLVFCQRGIRun BLAST on NCBI transcript from alignment at scaffold_36:273962..314458+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061560 ID=TCONS_00061560|Name=TCONS_00061560|organism=Clytia hemisphaerica|type=transcript|length=40497bp|location=Sequence derived from alignment at scaffold_36:273962..314458+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:273962..314458+ >TCONS_00061560 ID=TCONS_00061560|Name=TCONS_00061560|organism=Clytia hemisphaerica|type=CDS|length=10032bp|location=Sequence derived from alignment at scaffold_36:273962..314458+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00061560 vs. Swiss-Prot (Human)
Match: BRX1 (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2) HSP 1 Score: 354.755 bits (909), Expect = 4.521e-112 Identity = 155/232 (66.81%), Postives = 191/232 (82.33%), Query Frame = 2
Query: 1910 KWKNKERVLVFCQRGINFRARHLMLDLRTLMPHSRPDNKLDRKDKLTVINEVCEMKNCNRCVFFEMKKKKDLFMWVSSVPHGPSARFLVENVHTMDELKLAGNCLKGSRPILSFDKSFDKSVHYQLLKEMFTQIYATPNKHPKSKPFIDRIMTFSVNDNRIWIRNFQIVNHEDMSLTEIGPRFVLNLIRIFDGSFGGPTIFENPKYTSPNEHRRNLRKAASFRYVTKRSAKD 2605
KWKNKER+L+F RGINFR RHLM DLR LMPHS+ D K+DRKDKL VINEVCEMKNCN+C++FE KKK+DL+MW+S+ PHGPSA+FLV+N+HT+ ELK+ GNCLKGSRP+LSFD +FD+ HY LLKE+ QI++TP HPKS+PF+D + TF++ DNRIW RNFQI+ ED +L EIGPRFVLNLI+IF GSFGGPT++ENP Y SPN HRR +R + +Y K+ KD
Sbjct: 55 KWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-EDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKD 285 The following BLAST results are available for this feature:
BLAST of TCONS_00061560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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