Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061554 ID=TCONS_00061554|Name=TCONS_00061554|organism=Clytia hemisphaerica|type=transcript|length=2128bpRun BLAST on NCBI transcript from alignment at scaffold_36:32679..38475+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061554 ID=TCONS_00061554|Name=TCONS_00061554|organism=Clytia hemisphaerica|type=transcript|length=5797bp|location=Sequence derived from alignment at scaffold_36:32679..38475+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00061554 vs. Swiss-Prot (Human)
Match: PLD3 (Phospholipase D3 OS=Homo sapiens GN=PLD3 PE=1 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 2.218e-101 Identity = 174/408 (42.65%), Postives = 239/408 (58.58%), Query Frame = 1 Query: 397 CRIEIVETLPKVLSYPSGSPMHASTPDVWKKLTKVARERIDILSFYWTL-KNFTYDE---AVVGAEILEGLKGAARRGIKVNIVQNAPTKQFPNLDTFELAKEENVEVRSMKPETLGGGVLHTKVWVVDKRHMYVGSANFDWRSLTEVKELGAALYNCTCAGEDLFKIFDVNWLLAQKDSQIPSPWPEQYQTTINKDHPQNIKLVDAPPLDYYWSTSPPSFCAPKRTSDIDAIIDLISRAEKFVYIAVMDYYAAFVYQN-KRFWPTIDDALRSASFDRGIEVRLLTSKWPHTNAQQTAFIKSLNEFGKMPMPHTSGSITVKQFEMPPNE----IPFARVNHNKYMVTDKGGFISTSNWSGDYFATTAGVSLIVNQTESPXXXXXXXXXXXXXXXXFMRDWKSQYTKGL 1593 C +VE++P+ L +P+ S + ST W L A +DI SFYWTL N T+ + A G E+L L+ A +G+ V I + P+ P D + + +VR + + L GVLHTK WVVD+ H Y+GSAN DWRSLT+VKELG +YNC+C DL KIF+ W L Q S IPS WP Y T N++ P I L P L Y +++PP C RT D+ A+++++ A F+Y+AVM+Y + + RFWP IDD LR A+++RG++VRLL S W H+ AF+ SL + HT I VK F +P +E IP+ARVNHNKYMVT++ +I TSNWSG+YF TAG SL+V Q ++ QL+ +F+RDW S Y+ L Sbjct: 81 CEAVLVESIPEGLDFPNASTGNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPSAQQGEEVLRQLQTLAPKGVNVRIAVSKPSGPQPQAD-LQALLQSGAQVRMVDMQKLTHGVLHTKFWVVDQTHFYLGSANMDWRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYL-ASAPPPLCPSGRTPDLKALLNVVDNARSFIYVAVMNYLPTLEFSHPHRFWPAIDDGLRRATYERGVKVRLLISCWGHSEPSMRAFLLSL---AALRDNHTHSDIQVKLFVVPADEAQARIPYARVNHNKYMVTERATYIGTSNWSGNYFTETAGTSLLVTQN-------GRGGLRSQLEAIFLRDWDSPYSHDL 476 The following BLAST results are available for this feature:
BLAST of TCONS_00061554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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