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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061545 ID=TCONS_00061545|Name=TCONS_00061545|organism=Clytia hemisphaerica|type=transcript|length=967bp
ACGGGCCAGCGTGTAGACAATCATTCAAAGCTGGACCATCAAGAGAGGAA
CTGGCGTCGAACACCATGCGTATCTTGGTTGTTAACCTGTCTAATCGTAG
AACAGGTCGGTGTGGCATGTAGTACGTTTGTCCCTCAATAGACGTATCAG
GAGCGACCTCAATGATACCTTGTTGTAGTTGATCTTTAATGATTGCATCG
TAATCGTGTAACAATTGTNCCTGTCTAATCGTAGAACAGGTCGGTGTGGC
ATGTAGTACGTTTGTCCCTCAATAGACGTATCAGGAGCGACCTCAATGAT
ACCTTGTTGTAGTTGATCTTTAATGATTGCATCGTAATCGTGTAACAATT
GTTCGTTTGTCTTGAATTTCGTAAGCAGGCTGTTCATTCGACGCGTAGAG
TTGTAAAGATTATCCtttaaaatttcatgtttttcaatGAATGGAAGCTG
AACTTCATAACGAGCTtgttcaaatttgattttacttTCGAACTCTTGTA
AAACAACTTCCTTTGGGCTTTCAGTTCTACCCACCTCTTCAATTTCCCAA
AACTTTCTTAAAGTTGAATCAACATCACATGTCTGACAGTTAAGCGTGTG
TGCAGACAGAGTAACAGTNGTAAGTTTTGTgtacaaagtttttgaaataa
cAGTTTAAATTTCACGACGAGTGGATTAATCAACCCCAATGGGTCAAAGA
TTGATGAAGCAAATTGTATAACGTTTCTTTTCGTaggattttcgaaattc
acttTACGTAGAATTTCACTCAAACTAATAATCAGCGAGTCATTAGTTTT
ATCCCAAGGAATACCGAGTACCTTGGTCAAATTGTGATCAATAGTTTCAA
GATCACCCATGTAACAATTTTTAACTTTTGCTTCTAGATTTGCACAGTTC
GATTGCAATTTTCGTAAGTTTAAGCTCGCAAGAGCAAAATGAGACTTACA
GTTCTTGTAGAAGTCGN Run BLAST on NCBI protein sequence of TCONS_00061545-protein >TCONS_00061545-protein ID=TCONS_00061545-protein|Name=TCONS_00061545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
DFYKNCKSHFALASLNLRKLQSNCANLEAKVKNCYMGDLETIDHNLTKVL
GIPWDKTNDSLIISLSEILRKVNFENPTKRNVIQFASSIFDPLGLINPLV
VKFKLLFQKLCTQNLXLLLCLHTRLTVRHVMLIQL Run BLAST on NCBI transcript from alignment at scaffold_359:201765..202731 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061545 ID=TCONS_00061545|Name=TCONS_00061545|organism=Clytia hemisphaerica|type=transcript|length=967bp|location=Sequence derived from alignment at scaffold_359:201765..202731 (Clytia hemisphaerica)
NCGACTTCTACAAGAACTGTAAGTCTCATTTTGCTCTTGCGAGCTTAAAC
TTACGAAAATTGCAATCGAACTGTGCAAATCTAGAAGCAAAAGTTAAAAA
TTGTTACATGGGTGATCTTGAAACTATTGATCACAATTTGACCAAGGTAC
TCGGTATTCCTTGGGATAAAACTAATGACTCGCTGATTATTAGTTTGAGT
GAAATTCTACGTAaagtgaatttcgaaaatcctACGAAAAGAAACGTTAT
ACAATTTGCTTCATCAATCTTTGACCCATTGGGGTTGATTAATCCACTCG
TCGTGAAATTTAAACTgttatttcaaaaactttgtacACAAAACTTACNA
CTGTTACTCTGTCTGCACACACGCTTAACTGTCAGACATGTGATGTTGAT
TCAACTTTAAGAAAGTTTTGGGAAATTGAAGAGGTGGGTAGAACTGAAAG
CCCAAAGGAAGTTGTTTTACAAGAGTTCGAaagtaaaatcaaatttgaac
aAGCTCGTTATGAAGTTCAGCTTCCATTCattgaaaaacatgaaatttta
aaGGATAATCTTTACAACTCTACGCGTCGAATGAACAGCCTGCTTACGAA
ATTCAAGACAAACGAACAATTGTTACACGATTACGATGCAATCATTAAAG
ATCAACTACAACAAGGTATCATTGAGGTCGCTCCTGATACGTCTATTGAG
GGACAAACGTACTACATGCCACACCGACCTGTTCTACGATTAGACAGGNA
CAATTGTTACACGATTACGATGCAATCATTAAAGATCAACTACAACAAGG
TATCATTGAGGTCGCTCCTGATACGTCTATTGAGGGACAAACGTACTACA
TGCCACACCGACCTGTTCTACGATTAGACAGGTTAACAACCAAGATACGC
ATGGTGTTCGACGCCAGTTCCTCTCTTGATGGTCCAGCTTTGAATGATTG
TCTACACGCTGGCCCGT Coding sequence (CDS) from alignment at scaffold_359:201765..202731 >TCONS_00061545 ID=TCONS_00061545|Name=TCONS_00061545|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_359:201765..202731 (Clytia hemisphaerica)
GACTTCTACAAGAACTGTAAGTCTCATTTTGCTCTTGCGAGCTTAAACTT
ACGAAAATTGCAATCGAACTGTGCAAATCTAGAAGCAAAAGTTAAAAATT
GTTACATGGGTGATCTTGAAACTATTGATCACAATTTGACCAAGGTACTC
GGTATTCCTTGGGATAAAACTAATGACTCGCTGATTATTAGTTTGAGTGA
AATTCTACGTAaagtgaatttcgaaaatcctACGAAAAGAAACGTTATAC
AATTTGCTTCATCAATCTTTGACCCATTGGGGTTGATTAATCCACTCGTC
GTGAAATTTAAACTgttatttcaaaaactttgtacACAAAACTTACNACT
GTTACTCTGTCTGCACACACGCTTAACTGTCAGACATGTGATGTTGATTC
AACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061545-exon-scaffold_359-1491911889:201765..202731 | TCONS_00061545-exon-scaffold_359-1491911889:201765..202731 | Clytia hemisphaerica | exon |
| TCONS_00061545-exon-scaffold_359-1510915933:201765..202731 | TCONS_00061545-exon-scaffold_359-1510915933:201765..202731 | Clytia hemisphaerica | exon |
| TCONS_00061545-exon-scaffold_359-1575043694:201765..202731 | TCONS_00061545-exon-scaffold_359-1575043694:201765..202731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:201765..202731 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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