TCONS_00061544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061544
Unique NameTCONS_00061544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061544 ID=TCONS_00061544|Name=TCONS_00061544|organism=Clytia hemisphaerica|type=transcript|length=498bp
ATTTTATTAGGGTGTAgtacttttaatataatttttttgatgtttaGATA
ATTTTGTGTTTATGTTGCACTCATGAAAAGTAATTTTGAATCAATTTAAC
CTTTGGTTGCCCTTAATATATAATAGTAcataaaataaacttttaatcAT
CTATCAAACTGTATAAAAAAGCATGGAATGGGGTTGGAGTCAAGCCCTTG
GCTGCGTTCGCAAACATATGGAGGTCATTCTACCCCTGGCAAATCAAAAT
CCAATAACCTGTAGTTGTTGGCATTAACGAGGAAACCATTGGCTGGTAAT
ACACTTGGTTGTAAATACATTTTATGGTATTGGAAATGGAATTGCTAAAA
CAAGagttttttaaaatgaaaattaagagACAATTGAttccattgaaaaa
atttgatttacctattttttatacttttaacTCTAAATATATTTTGCCTC
TAAAGTgaattttcttattatttataaAAATGACAATTTACTTTCAGC
Run BLAST on NCBI

transcript from alignment at scaffold_359:116813..117310

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061544 ID=TCONS_00061544|Name=TCONS_00061544|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_359:116813..117310 (Clytia hemisphaerica)
GCTGAAAGTAAATTGTCATTTttataaataataagaaaattcACTTTAGA
GGCAAAATATATTTAGAgttaaaagtataaaaaataggtaaatcaaattt
tttcaatggaaTCAATTGTctcttaattttcattttaaaaaactCTTGTT
TTAGCAATTCCATTTCCAATACCATAAAATGTATTTACAACCAAGTGTAT
TACCAGCCAATGGTTTCCTCGTTAATGCCAACAACTACAGGTTATTGGAT
TTTGATTTGCCAGGGGTAGAATGACCTCCATATGTTTGCGAACGCAGCCA
AGGGCTTGACTCCAACCCCATTCCATGCTTTTTTATACAGTTTGATAGAT
gattaaaagtttattttatgTACTATTATATATTAAGGGCAACCAAAGGT
TAAATTGATTCAAAATTACTTTTCATGAGTGCAACATAAACACAAAATTA
TCtaaacatcaaaaaaattatattaaaagtacTACACCCTAATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038614XLOC_038614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061544-exon-scaffold_359-1491911889:116813..117310TCONS_00061544-exon-scaffold_359-1491911889:116813..117310Clytia hemisphaericaexon
TCONS_00061544-exon-scaffold_359-1510915933:116813..117310TCONS_00061544-exon-scaffold_359-1510915933:116813..117310Clytia hemisphaericaexon
TCONS_00061544-exon-scaffold_359-1575043694:116813..117310TCONS_00061544-exon-scaffold_359-1575043694:116813..117310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_359supercontigscaffold_359:116813..117310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.82349	2.51392	0.277991	0.543942	7.11862	5.75604	8.20705	7.97885	7.44824	7.94448	13.4323	8.09401	21.6357	19.3317	11.6411	11.595	7.83324	11.5237	30.9278	26.4918	13.1748	9.72613	4.78566	6.91018	8.69896	12.7041	8.41644	9.1619	3.95138	4.58112
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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