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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061539 ID=TCONS_00061539|Name=TCONS_00061539|organism=Clytia hemisphaerica|type=transcript|length=1047bp
CTTGGGGTACAGGGCCATGCACCTGAAAGTTCGTACCGAATATCACTTGC
GCGTTCCCAGACAATTGGTTTCTGATGTGATGTATGAACTGGATCCAGAG
GGTGTGGGGTCAAGAAAcgttaaaaaaaagaaagaaagaaaaacaacctT
TTGTTTCTGAAGGGCCAGGCTGGACGTACCCCCTTGACGGGCATGATAAA
CTGATGGGATTTCAAAATTCAACCTTCCCTGTTGCAATCTATGGTTGTCT
TGAtactttttcaagaaaaattattttcctgaGAGTTTGGACCTCGAACT
CTGACCCTAACTTGATTGGCAGATTTTATATGGAATATTTGCTGGATTCA
AAAGAAATTCCTACATATCTCAGAGTAGATAGAGGTACCGAAATTAGAAC
CATGGGGACAATTCAAGCCTTCCTTACTGATGAATTTGGAAACATGGAAG
ATCCTTTGAACTCATTGAATTGAGAACAATTGAATTTTCTTCTACGATCT
CATGCATATAATCCCAACAGTGAAATCGACAAAAAAGTAATGGCTTATAT
TTTTGTCCCAGTTGTCCAACGTGAGTGCGACATTTTTGCAAGAGAATGCT
CATCGAGTTAGGCATCAAGCAGGTGTTATTCTACCAGCAGGTGTCCCTAA
TCATATCTTCAAAAGAAATACAATGCTGAGGACCAGCATATTCCGATCAC
TGAAAACTCCCTGTTAGAAGTTAGCGCCCTTGCCAAGCTTGATGAAGGAC
CATCACACTATATCAACGAAGAAGATcagcaagttttttcaaaccaTTTG
GCACACCCTCAAGATATTTTATGTAAGGATTTAGTGGATAGTTATATATA
CTTAAAAAGCTGCGTCACTTAGAACTTGACTGTTTATGAGAGATATTTAA
CCCGATCTGCCTGAGGGTTTCGGGGACTTGTGCTGCTCCGAAGTGGCACA
TTTAGGCCCccttgaataattcctgataggGTGATTCAGATTtcatgaaa
ctttgcacacttATATCACTACtaggtcaaaaaacattgattaggct Run BLAST on NCBI protein sequence of TCONS_00061539-protein >TCONS_00061539-protein ID=TCONS_00061539-protein|Name=TCONS_00061539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MNWIQRVWGQETLKKRKKEKQPFVSEGPGWTYPLDGHDKLMGFQNSTFPV
AIYGCLDTFSRKIIFLRVWTSNSDPNLIGRFYMEYLLDSKEIPTYLRVDR
GTEIRTMGTIQAFLTDEFGNMEDPLNSLN Run BLAST on NCBI transcript from alignment at scaffold_359:65167..66213 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061539 ID=TCONS_00061539|Name=TCONS_00061539|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at scaffold_359:65167..66213 (Clytia hemisphaerica)
agcctaatcaatgttttttgacctaGTAGTGATATaagtgtgcaaagttt
catgaAATCTGAATCACcctatcaggaattattcaaggGGGCCTAAATGT
GCCACTTCGGAGCAGCACAAGTCCCCGAAACCCTCAGGCAGATCGGGTTA
AATATCTCTCATAAACAGTCAAGTTCTAAGTGACGCAGCTTTTTAAGTAT
ATATAACTATCCACTAAATCCTTACATAAAATATCTTGAGGGTGTGCCAA
AtggtttgaaaaaacttgctgATCTTCTTCGTTGATATAGTGTGATGGTC
CTTCATCAAGCTTGGCAAGGGCGCTAACTTCTAACAGGGAGTTTTCAGTG
ATCGGAATATGCTGGTCCTCAGCATTGTATTTCTTTTGAAGATATGATTA
GGGACACCTGCTGGTAGAATAACACCTGCTTGATGCCTAACTCGATGAGC
ATTCTCTTGCAAAAATGTCGCACTCACGTTGGACAACTGGGACAAAAATA
TAAGCCATTACTTTTTTGTCGATTTCACTGTTGGGATTATATGCATGAGA
TCGTAGAAGAAAATTCAATTGTTCTCAATTCAATGAGTTCAAAGGATCTT
CCATGTTTCCAAATTCATCAGTAAGGAAGGCTTGAATTGTCCCCATGGTT
CTAATTTCGGTACCTCTATCTACTCTGAGATATGTAGGAATTTCTTTTGA
ATCCAGCAAATATTCCATATAAAATCTGCCAATCAAGTTAGGGTCAGAGT
TCGAGGTCCAAACTCtcaggaaaataatttttcttgaaaaagtaTCAAGA
CAACCATAGATTGCAACAGGGAAGGTTGAATTTTGAAATCCCATCAGTTT
ATCATGCCCGTCAAGGGGGTACGTCCAGCCTGGCCCTTCAGAAACAAAag
gttgtttttctttctttcttttttttaacgTTTCTTGACCCCACACCCTC
TGGATCCAGTTCATACATCACATCAGAAACCAATTGTCTGGGAACGCGCA
AGTGATATTCGGTACGAACTTTCAGGTGCATGGCCCTGTACCCCAAG Coding sequence (CDS) from alignment at scaffold_359:65167..66213 >TCONS_00061539 ID=TCONS_00061539|Name=TCONS_00061539|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_359:65167..66213 (Clytia hemisphaerica)
TCAATTCAATGAGTTCAAAGGATCTTCCATGTTTCCAAATTCATCAGTAA
GGAAGGCTTGAATTGTCCCCATGGTTCTAATTTCGGTACCTCTATCTACT
CTGAGATATGTAGGAATTTCTTTTGAATCCAGCAAATATTCCATATAAAA
TCTGCCAATCAAGTTAGGGTCAGAGTTCGAGGTCCAAACTCtcaggaaaa
taatttttcttgaaaaagtaTCAAGACAACCATAGATTGCAACAGGGAAG
GTTGAATTTTGAAATCCCATCAGTTTATCATGCCCGTCAAGGGGGTACGT
CCAGCCTGGCCCTTCAGAAACAAAaggttgtttttctttctttctttttt
ttaacgTTTCTTGACCCCACACCCTCTGGATCCAGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061539-exon-scaffold_359-1491911889:65167..66213 | TCONS_00061539-exon-scaffold_359-1491911889:65167..66213 | Clytia hemisphaerica | exon |
| TCONS_00061539-exon-scaffold_359-1510915933:65167..66213 | TCONS_00061539-exon-scaffold_359-1510915933:65167..66213 | Clytia hemisphaerica | exon |
| TCONS_00061539-exon-scaffold_359-1575043694:65167..66213 | TCONS_00061539-exon-scaffold_359-1575043694:65167..66213 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:65167..66213 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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