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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061536 ID=TCONS_00061536|Name=TCONS_00061536|organism=Clytia hemisphaerica|type=transcript|length=2228bp
aaaaaagaaaagaacacaAAAATAGGAACAATATATAAATCATACCTCTC
TACATCAACAAATGAAGAGTATACCATAAGGTagaaagaaaaacacaatt
ACAAACAAACAGGGAGGAACCAAAGTCGCAGAGAAGAAGCAagcttcaaa
aagaaaaaaaaagatttttcaggtGATTGCTAATTAGATTTTCGTTGATA
AAGAAGATAAAGGAAGAATCGCCTTGATATAATTTTTCATACAGAGTAGA
GAAATTTGTGTACAGTCTGCACGTGACTTTTTGATACCAGCGTGACAACT
CAAgGCTGCGTGAAACATCTCTGTGTGCGGTGCAAAGATTTACAAATTCG
TTATAAAATTCGAGGATTCAGCAATTCAAAGACAACATTGAACATTGTAC
CACGGTAACAGTATCAAAGCATTATCTTAAAAACAATCAGACATAAAACC
TACATCAACATAGAGCACTGATATACCGATGCCGAGTCTCAAGCAATATT
AATCTTAGCATCGAAATAACTACTTGCAGTACTCTCTTGGACCACGTGAA
ACAAAAGCTGGAAATATGTTTCAAACAGACGTCAAATGGGTCCTATTCtg
tccaattcaactcatcatATGTGCAATTGGCATACCGTGTAATATCATCT
CTGCAATGGTTTGGTCACGACTTAAAAAAAAGGGACGAAGTAAAAATAAA
TCGGCATGCAATAATTTCATCTTACTCTCCATTGTTGATATTGGTGTCCT
CATTTTCTCTGTTGTCTCCGATGTTGTTCCTGTCATGAATAAGAAGTTGA
TGAACAATGCAGCTAAATGGTTTGGTAAGCTCTATGTCTACTTTATCCAT
CCTATGCATTATTACCTGTTGTTTACGTCTATCTTTTTGGTCACTGTTTT
ATCTATCGAGCGTCTTAAATTTGTCATCAGACCATTATCCAGTCTGACCT
TCTCCAAGAATTGGGCTAGAGCATTATGGATGCTTGTTTTTGCTGTCTCA
TTTGTGGTCAATATACCATCCttctttgaatttgaaatggTAACAATCAA
TGGCACAACTATCGTCAGACCGTTAAGCTACGAAAATAACGTCGCTTTTC
GTGATATAGTCTTCATCTCACATTGCATCTTCGGGCTAGCTTTACCATGG
TTGGTAAGTCTAGTCTGCAACATCCTCTTAGTCACAAAGAGTTTTAATCG
TCTGAAAACAGTCTCAAAGAATTCTGTCAACGCTGATACCGTGCATATTC
TGAAGACCACAACAGCCTTGACCTTCTCCAGCCTACTTTTGTTGTCAATT
CAATGTATTAGCCGCTGCTTCAAGATGTTTACAATGTATTCTGAAGAATC
TTGGGCCCTCGTTAATAAAATCTCAGATATCGGTCATTTAGCTATACCGT
GTAATTCCGCTGTCAATTTCATCATGTTTTGTCTTCCTGGTTCGTTTTTC
CGTAAGGAAATGTTGACCATgtttaaaagaagaaaagatcAAATCAATGT
CAGATTTACCAGTAAAAGCCCGGTGAAAAAGATTTGCAGCGAAGAAGGCA
ACTcgatggaaaaatgaaaaaaggggaaaatggaaaaataaaaacgattG
TCTTGGTCAGAAGCAAAGTAATTAAGAGTGACAAGAAAAACAATTAGTGA
GATAGAACTCGCCATATGAATGATGAAGTAAAATATATAAACAGTTTGAA
TTATAACTAATTAAAGTATGAACGGACAATGAATGTTGGGGAAAAATTTC
ATAGTTGTTATATATAACATATCATGGAATGAAATGCAgacAGGAATGAA
ATAAAACTATCGAGTAATATAGAGTAATATCAAGATCTTGATTTcacccg
ggggtactagggctaGCGGACGAGGGTTATGTGCGGGCGGGACCTCTGAA
AGccgacctttagagagacttgTTTTTGCCTAATAAGTGACCCTAAGACA
TTTTCACAAAACTTTCTTCAATTCTCAGAAGAATTCTCCAAtacttttga
aagattttcttaacTATCTTAACTTTTCAGTCTTCTTTGATtcgagtttg
tgaaaaaaccgacccttggAAAGATTGGAAAGAataatttgaaactttct
gatttttgcaaccccccggattttttatttttccctacTTTATTGAACGA
TTTAGTTTGTGATCTGAGTGCGTACAAAGATACCTGATTTGTTAAAAGCC
AAAGCttgaaaaccgttttttaggtCCC Run BLAST on NCBI protein sequence of TCONS_00061536-protein >TCONS_00061536-protein ID=TCONS_00061536-protein|Name=TCONS_00061536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MFQTDVKWVLFCPIQLIICAIGIPCNIISAMVWSRLKKKGRSKNKSACNN
FILLSIVDIGVLIFSVVSDVVPVMNKKLMNNAAKWFGKLYVYFIHPMHYY
LLFTSIFLVTVLSIERLKFVIRPLSSLTFSKNWARALWMLVFAVSFVVNI
PSFFEFEMVTINGTTIVRPLSYENNVAFRDIVFISHCIFGLALPWLVSLV
CNILLVTKSFNRLKTVSKNSVNADTVHILKTTTALTFSSLLLLSIQCISR
CFKMFTMYSEESWALVNKISDIGHLAIPCNSAVNFIMFCLPGSFFRKEML
TMFKRRKDQINVRFTSKSPVKKICSEEGNSMEK Run BLAST on NCBI transcript from alignment at scaffold_359:192089..194822- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061536 ID=TCONS_00061536|Name=TCONS_00061536|organism=Clytia hemisphaerica|type=transcript|length=2734bp|location=Sequence derived from alignment at scaffold_359:192089..194822- (Clytia hemisphaerica)
AAAAAAGAAAAGAACACAAAAATAGGAACAATATATAAATCATACCTCTC
TACATCAACAAATGAAGAGTATACCATAAGGTAGAAAGAAAAACACAATT
ACAAACAAACAGGGAGGAACCAAAGTCGCAGAGAAGAAGCAAGCTTCAAA
AAGAAAAAAAAAGATTTTTCAGGTGATTGCTAATTAGATTTTCGTTGATA
AAGAAGATAAAGGAAGAATCGCCTTGATATAATTTTTCATACAGAGTAGA
GAAATTTGTGTACAGTCTGCACGTGACTTTTTGATACCAGCGTGACAACT
CAAGGTAAGATTTTTCAAAAATATATTTTTAGATTCTCAGATTTCGTTTT
TATATTAAATTTATTCTTATCCTCGATTGAGCGTTTTTTCATTTGCTTTA
CATATTAAGCCCCCTGTTGAGAAGACCTAACAACCTCTTTAAATAAATTC
AACAATTTATTATTGTCAAAAGTTTGTCTTGAAATTCAAATTCAAATTGA
ATTCAAAAACATTGAATGTGTTCAAAATGATATGGATACCTTGAGAATAA
ATAGAAAACCAATACAATTTTTGCTTTAGTATTGACAGCAATGCATATTG
AGAATCTGAGAGAGGGATCCAGAGCTGGCACACAAAGTCCATTTAACGGC
CATAACGTTCATATAACGTTTAGTGTCAGCTGGTATTGACATGATCTTGT
TATACGACAATCAATATATATTTACTTTTAGGCTGCGTGAAACATCTCTG
TGTGCGGTGCAAAGATTTACAAATTCGTTATAAAATTCGAGGATTCAGCA
ATTCAAAGACAACATTGAACATTGTACCACGGTAACAGTATCAAAGCATT
ATCTTAAAAACAATCAGACATAAAACCTACATCAACATAGAGCACTGATA
TACCGATGCCGAGTCTCAAGCAATATTAATCTTAGCATCGAAATAACTAC
TTGCAGTACTCTCTTGGACCACGTGAAACAAAAGCTGGAAATATGTTTCA
AACAGACGTCAAATGGGTCCTATTCTGTCCAATTCAACTCATCATATGTG
CAATTGGCATACCGTGTAATATCATCTCTGCAATGGTTTGGTCACGACTT
AAAAAAAAGGGACGAAGTAAAAATAAATCGGCATGCAATAATTTCATCTT
ACTCTCCATTGTTGATATTGGTGTCCTCATTTTCTCTGTTGTCTCCGATG
TTGTTCCTGTCATGAATAAGAAGTTGATGAACAATGCAGCTAAATGGTTT
GGTAAGCTCTATGTCTACTTTATCCATCCTATGCATTATTACCTGTTGTT
TACGTCTATCTTTTTGGTCACTGTTTTATCTATCGAGCGTCTTAAATTTG
TCATCAGACCATTATCCAGTCTGACCTTCTCCAAGAATTGGGCTAGAGCA
TTATGGATGCTTGTTTTTGCTGTCTCATTTGTGGTCAATATACCATCCTT
CTTTGAATTTGAAATGGTAACAATCAATGGCACAACTATCGTCAGACCGT
TAAGCTACGAAAATAACGTCGCTTTTCGTGATATAGTCTTCATCTCACAT
TGCATCTTCGGGCTAGCTTTACCATGGTTGGTAAGTCTAGTCTGCAACAT
CCTCTTAGTCACAAAGAGTTTTAATCGTCTGAAAACAGTCTCAAAGAATT
CTGTCAACGCTGATACCGTGCATATTCTGAAGACCACAACAGCCTTGACC
TTCTCCAGCCTACTTTTGTTGTCAATTCAATGTATTAGCCGCTGCTTCAA
GATGTTTACAATGTATTCTGAAGAATCTTGGGCCCTCGTTAATAAAATCT
CAGATATCGGTCATTTAGCTATACCGTGTAATTCCGCTGTCAATTTCATC
ATGTTTTGTCTTCCTGGTTCGTTTTTCCGTAAGGAAATGTTGACCATGTT
TAAAAGAAGAAAAGATCAAATCAATGTCAGATTTACCAGTAAAAGCCCGG
TGAAAAAGATTTGCAGCGAAGAAGGCAACTCGATGGAAAAATGAAAAAAG
GGGAAAATGGAAAAATAAAAACGATTGTCTTGGTCAGAAGCAAAGTAATT
AAGAGTGACAAGAAAAACAATTAGTGAGATAGAACTCGCCATATGAATGA
TGAAGTAAAATATATAAACAGTTTGAATTATAACTAATTAAAGTATGAAC
GGACAATGAATGTTGGGGAAAAATTTCATAGTTGTTATATATAACATATC
ATGGAATGAAATGCAGACATAAATAAAATAAAACTATCGAGTAATATAGA
GTAATATCAAGATCTTGATTTCACCCGGGGGTACTAGGGTNACAGACAGG
AATGAAATAAAACTATCGAGTAATATAGAGTAATATCAAGATCTTGATTT
CACCCGGGGGTACTAGGGCTAGCGGACGAGGGTTATGTGCGGGCGGGACC
TCTGAAAGCCGACCTTTAGAGAGACTTGTTTTTGCCTAATAAGTGACCCT
AAGACATTTTCACAAAACTTTCTTCAATTCTCAGAAGAATTCTCCAATAC
TTTTGAAAGATTTTCTTAACTATCTTAACTTTTCAGTCTTCTTTGATTCG
AGTTTGTGAAAAAACCGACCCTTGGAAAGATTGGAAAGAATAATTTGAAA
CTTTCTGATTTTTGCAACCCCCCGGATTTTTTATTTTTCCCTACTTTATT
GAACGATTTAGTTTGTGATCTGAGTGCGTACAAAGATACCTGATTTGTTA
AAAGCCAAAGCTTGAAAACCGTTTTTTAGGTCCC Coding sequence (CDS) from alignment at scaffold_359:192089..194822- >TCONS_00061536 ID=TCONS_00061536|Name=TCONS_00061536|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_359:192089..194822- (Clytia hemisphaerica)
ATGTTTCAAACAGACGTCAAATGGGTCCTATTCTGTCCAATTCAACTCAT
CATATGTGCAATTGGCATACCGTGTAATATCATCTCTGCAATGGTTTGGT
CACGACTTAAAAAAAAGGGACGAAGTAAAAATAAATCGGCATGCAATAAT
TTCATCTTACTCTCCATTGTTGATATTGGTGTCCTCATTTTCTCTGTTGT
CTCCGATGTTGTTCCTGTCATGAATAAGAAGTTGATGAACAATGCAGCTA
AATGGTTTGGTAAGCTCTATGTCTACTTTATCCATCCTATGCATTATTAC
CTGTTGTTTACGTCTATCTTTTTGGTCACTGTTTTATCTATCGAGCGTCT
TAAATTTGTCATCAGACCATTATCCAGTCTGACCTTCTCCAAGAATTGGG
CTAGAGCATTATGGATGCTTGTTTTTGCTGTCTCATTTGTGGTCAATATA
CCATCCTTCTTTGAATTTGAAATGGTAACAATCAATGGCACAACTATCGT
CAGACCGTTAAGCTACGAAAATAACGTCGCTTTTCGTGATATAGTCTTCA
TCTCACATTGCATCTTCGGGCTAGCTTTACCATGGTTGGTAAGTCTAGTC
TGCAACATCCTCTTAGTCACAAAGAGTTTTAATCGTCTGAAAACAGTCTC
AAAGAATTCTGTCAACGCTGATACCGTGCATATTCTGAAGACCACAACAG
CCTTGACCTTCTCCAGCCTACTTTTGTTGTCAATTCAATGTATTAGCCGC
TGCTTCAAGATGTTTACAATGTATTCTGAAGAATCTTGGGCCCTCGTTAA
TAAAATCTCAGATATCGGTCATTTAGCTATACCGTGTAATTCCGCTGTCA
ATTTCATCATGTTTTGTCTTCCTGGTTCGTTTTTCCGTAAGGAAATGTTG
ACCATGTTTAAAAGAAGAAAAGATCAAATCAATGTCAGATTTACCAGTAA
AAGCCCGGTGAAAAAGATTTGCAGCGAAGAAGGCAACTCGATGGAAAAAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061536-exon-scaffold_359-1575043694:194519..194822 | TCONS_00061536-exon-scaffold_359-1575043694:194519..194822 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1575043694:192605..194091 | TCONS_00061536-exon-scaffold_359-1575043694:192605..194091 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1575043694:192089..192525 | TCONS_00061536-exon-scaffold_359-1575043694:192089..192525 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1510915933:194519..194822 | TCONS_00061536-exon-scaffold_359-1510915933:194519..194822 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1510915933:192605..194091 | TCONS_00061536-exon-scaffold_359-1510915933:192605..194091 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1510915933:192089..192525 | TCONS_00061536-exon-scaffold_359-1510915933:192089..192525 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1491911889:194519..194822 | TCONS_00061536-exon-scaffold_359-1491911889:194519..194822 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1491911889:192605..194091 | TCONS_00061536-exon-scaffold_359-1491911889:192605..194091 | Clytia hemisphaerica | exon |
| TCONS_00061536-exon-scaffold_359-1491911889:192089..192525 | TCONS_00061536-exon-scaffold_359-1491911889:192089..192525 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:192089..194822 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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