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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061516 ID=TCONS_00061516|Name=TCONS_00061516|organism=Clytia hemisphaerica|type=transcript|length=460bp
AAGATATTGTCCCGTTTTGTCGGTGTGAAACTGACTTCACGTACACACTT
GAAGAATTTAAGAACAAGAACCATCCCAACAATTATGCTGCTCATATAGT
GTATTTGaatgttGCTAATAAAGCTATCAAGAGGTTTCAACTCAACGAAG
GAGATGAAAACCATGGTAACGAGATAGAGAAGGCAAATGCTCTTTACTGG
CTAATGAAGGCTTTAAAGATGGAAACCACGGACAAGCATGCGAGAAAGTT
CTTCAGCAAACgattttcagctcttctggCAACCAAAAAGCACCAAGAGA
AGGAGAAGATGCAAGCCGAACAAGAAGGAATAAGCCTTTACCAATATCGC
CAACGAAGAAAGCTGGTAAATCAGGtgaagaaaaagagaaagagaaatac
CGACCAACCTACCGACGATCTCGCCACCGACCAACCTACCGACGATCTCA
CCACCGACCA Run BLAST on NCBI protein sequence of TCONS_00061516-protein >TCONS_00061516-protein ID=TCONS_00061516-protein|Name=TCONS_00061516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
DIVPFCRCETDFTYTLEEFKNKNHPNNYAAHIVYLNVANKAIKRFQLNEG
DENHGNEIEKANALYWLMKALKMETTDKHARKFFSKRFSALLATKKHQEK
EKMQAEQEGISLYQYRQRRKLVNQVKKKRKRNTDQPTDDLATDQPTDDLT
TD Run BLAST on NCBI transcript from alignment at scaffold_359:21144..22537+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061516 ID=TCONS_00061516|Name=TCONS_00061516|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at scaffold_359:21144..22537+ (Clytia hemisphaerica)
AAGATATTGTCCCGTTTTGTCGGTGTGAAACTGACTTCACGTACACACTT
GAAGAATTTAAGAACAAGAACCATCCCAACAATTATGCTGCTCATATAGT
GTATTTGGTAAGTTCACATCctttaactttaatttttttcatcgtCTTTT
GATCGTGATCGATTGTAGGGTATTGGAAAATTTATTTCAGTTCACCTCGC
CCCCTTACTACGACCtagtaataaaaaaaaagtcattctTTCCTTTTCTG
CCGAATTTGGTTTATTTatgaaaaacgtgaaaatttgtCTTAAGGGAATT
TTTGGGACTTCTGGTTTTACCCTTTTTCCTAAACGATGTCCTGTGTTTGT
CCTTAACCCTTGTACTATCTTCAAGAGGTATAAacgattcattttttttt
tcagaatgttGCTAATAAAGCTATCAAGAGGTTTCAACTCAACGAAGGAG
ATGAAAACCATGGTAACGAGATAGAGAAGGCAAATGCTCTTTACTGGGTA
AATGTTAACTTAAATTCTGTGTCTCTGATTATGTCGAATTCTTATACGTA
TCCTGCTCTTAAATTGTTGTTAGAAAGAGCTGTCACTTTAAGCGAGCATT
TGCACTCAAAACATTTTTACTATCCATAGGCTAATAAATAATGCgctttt
gctttctttttttctatagCTAATGAAGGCTTTAAAGATGGAAACCACGG
ACAAGCATGCGAGAAAGTTCTTCAGCAAACgattttcagctcttctggCA
ACCAAAAAGCACCAAGAGAAGGAGAAGTAAGTATATTTTGATATATTCTA
TTTGTTGATCTATTGTTATTTCAAATTCTTAATAATCATGGTGTAATCTT
TCCATATGAACAATACCTTAATCCATGATGAATTTGAATAGGTGTGTCAA
TCaaagaaaagattacatcatgaagaATATAAAAATTGCATGCAAAAAGG
GAAAACCCTAAGATCAATTAATATTTTTCCACTTTTTGTTTAACATTTcg
taatttttataagaatcaggaAATTTAGACTTTTGCTGGGCTGCAGTTAT
TCttttgctgaattttttttgagttattttgCTTTTCATACGTTGGTATA
AACTACTTAAATCTGAGGCCAAGACTTAGATATTTATCGTAGGTATAGCC
GAATTTCAGCTTTGTGTCTTGTAtaacaatgttcttataaaaatacgtgT
AATTACCTCAGTGttttacgaaaaaaaatttatgcttTAAGGATGCAAGC
CGAACAAGAAGGAATAAGCCTTTACCAATATCGCCAACGAAGAAAGCTGG
TAAATCAGGtgaagaaaaagagaaagagaaatacCGACCAACCTACCGAC
GATCTCGCCACCGACCAACCTACCGACGATCTCACCACCGACCA Coding sequence (CDS) from alignment at scaffold_359:21144..22537+ >TCONS_00061516 ID=TCONS_00061516|Name=TCONS_00061516|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_359:21144..22537+ (Clytia hemisphaerica)
GATATTGTCCCGTTTTGTCGGTGTGAAACTGACTTCACGTACACACTTGA
AGAATTTAAGAACAAGAACCATCCCAACAATTATGCTGCTCATATAGTGT
ATTTGaatgttGCTAATAAAGCTATCAAGAGGTTTCAACTCAACGAAGGA
GATGAAAACCATGGTAACGAGATAGAGAAGGCAAATGCTCTTTACTGGCT
AATGAAGGCTTTAAAGATGGAAACCACGGACAAGCATGCGAGAAAGTTCT
TCAGCAAACgattttcagctcttctggCAACCAAAAAGCACCAAGAGAAG
GAGAAGATGCAAGCCGAACAAGAAGGAATAAGCCTTTACCAATATCGCCA
ACGAAGAAAGCTGGTAAATCAGGtgaagaaaaagagaaagagaaatacCG
ACCAACCTACCGACGATCTCGCCACCGACCAACCTACCGACGATCTCACC
ACCGACGATATTGTCCCGTTTTGTCGGTGTGAAACTGACTTCACGTACAC
ACTTGAAGAATTTAAGAACAAGAACCATCCCAACAATTATGCTGCTCATA
TAGTGTATTTGaatgttGCTAATAAAGCTATCAAGAGGTTTCAACTCAAC
GAAGGAGATGAAAACCATGGTAACGAGATAGAGAAGGCAAATGCTCTTTA
CTGGCTAATGAAGGCTTTAAAGATGGAAACCACGGACAAGCATGCGAGAA
AGTTCTTCAGCAAACgattttcagctcttctggCAACCAAAAAGCACCAA
GAGAAGGAGAAGATGCAAGCCGAACAAGAAGGAATAAGCCTTTACCAATA
TCGCCAACGAAGAAAGCTGGTAAATCAGGtgaagaaaaagagaaagagaa
atacCGACCAACCTACCGACGATCTCGCCACCGACCAACCTACCGACGAT
CTCACCACCGACGATATTGTCCCGTTTTGTCGGTGTGAAACTGACTTCAC
GTACACACTTGAAGAATTTAAGAACAAGAACCATCCCAACAATTATGCTG
CTCATATAGTGTATTTGaatgttGCTAATAAAGCTATCAAGAGGTTTCAA
CTCAACGAAGGAGATGAAAACCATGGTAACGAGATAGAGAAGGCAAATGC
TCTTTACTGGCTAATGAAGGCTTTAAAGATGGAAACCACGGACAAGCATG
CGAGAAAGTTCTTCAGCAAACgattttcagctcttctggCAACCAAAAAG
CACCAAGAGAAGGAGAAGATGCAAGCCGAACAAGAAGGAATAAGCCTTTA
CCAATATCGCCAACGAAGAAAGCTGGTAAATCAGGtgaagaaaaagagaa
agagaaatacCGACCAACCTACCGACGATCTCGCCACCGACCAACCTACC
GACGATCTCACCACCGACGATATTGTCCCGTTTTGTCGGTGTGAAACTGA
CTTCACGTACACACTTGAAGAATTTAAGAACAAGAACCATCCCAACAATT
ATGCTGCTCATATAGTGTATTTGaatgttGCTAATAAAGCTATCAAGAGG
TTTCAACTCAACGAAGGAGATGAAAACCATGGTAACGAGATAGAGAAGGC
AAATGCTCTTTACTGGCTAATGAAGGCTTTAAAGATGGAAACCACGGACA
AGCATGCGAGAAAGTTCTTCAGCAAACgattttcagctcttctggCAACC
AAAAAGCACCAAGAGAAGGAGAAGATGCAAGCCGAACAAGAAGGAATAAG
CCTTTACCAATATCGCCAACGAAGAAAGCTGGTAAATCAGGtgaagaaaa
agagaaagagaaatacCGACCAACCTACCGACGATCTCGCCACCGACCAA
CCTACCGACGATCTCACCACCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061516-exon-scaffold_359-1491911889:21144..21250 | TCONS_00061516-exon-scaffold_359-1491911889:21144..21250 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1510915933:21144..21250 | TCONS_00061516-exon-scaffold_359-1510915933:21144..21250 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1575043694:21144..21250 | TCONS_00061516-exon-scaffold_359-1575043694:21144..21250 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1491911889:21548..21640 | TCONS_00061516-exon-scaffold_359-1491911889:21548..21640 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1510915933:21548..21640 | TCONS_00061516-exon-scaffold_359-1510915933:21548..21640 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1575043694:21548..21640 | TCONS_00061516-exon-scaffold_359-1575043694:21548..21640 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1491911889:21813..21919 | TCONS_00061516-exon-scaffold_359-1491911889:21813..21919 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1510915933:21813..21919 | TCONS_00061516-exon-scaffold_359-1510915933:21813..21919 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1575043694:21813..21919 | TCONS_00061516-exon-scaffold_359-1575043694:21813..21919 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1491911889:22385..22537 | TCONS_00061516-exon-scaffold_359-1491911889:22385..22537 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1510915933:22385..22537 | TCONS_00061516-exon-scaffold_359-1510915933:22385..22537 | Clytia hemisphaerica | exon |
| TCONS_00061516-exon-scaffold_359-1575043694:22385..22537 | TCONS_00061516-exon-scaffold_359-1575043694:22385..22537 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:21144..22537 + |
Blast
The following BLAST results are available for this feature:
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