TCONS_00061508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061508
Unique NameTCONS_00061508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061508 ID=TCONS_00061508|Name=TCONS_00061508|organism=Clytia hemisphaerica|type=transcript|length=316bp
acaccggattcttccagtcgtttatacaaactgaatcccgtatcattatt
tgtgtttattattagtattacatgcattataaacgactccagtctataag
ATACACCATCACATACTATTAAAAggaatttttcgtttttattcagttaa
tcaaaattttatatatgaaTATGAATATAAGGTAAAAGGCCTAGTATAAT
TCAAATAATGCATAAATGACACTATGTGGTAAATGCTTATTAATGGTTAT
TCTTACAAGACCAAAAATCATCTAATCATTGTTTGTCAGTTTACTAGTAG
CGCGGGAAACATACCA
Run BLAST on NCBI

transcript from alignment at scaffold_358:697091..697406

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061508 ID=TCONS_00061508|Name=TCONS_00061508|organism=Clytia hemisphaerica|type=transcript|length=316bp|location=Sequence derived from alignment at scaffold_358:697091..697406 (Clytia hemisphaerica)
TGGTATGTTTCCCGCGCTACTAGTAAACTGACAAACAATGATTAGATGAT
TTTTGGTCTTGTAAGAATAACCATTAATAAGCATTTACCACATAGTGTCA
TTTATGCATTATTTGAATTATACTAGGCCTTTTACCTTATATTCATAttc
atatataaaattttgattaactgaataaaaacgaaaaattccTTTTAATA
GTATGTGATGGTGTATcttatagactggagtcgtttataatgcatgtaat
actaataataaacacaaataatgatacgggattcagtttgtataaacgac
tggaagaatccggtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038592XLOC_038592Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061508-exon-scaffold_358-1491911889:697091..697406TCONS_00061508-exon-scaffold_358-1491911889:697091..697406Clytia hemisphaericaexon
TCONS_00061508-exon-scaffold_358-1510915933:697091..697406TCONS_00061508-exon-scaffold_358-1510915933:697091..697406Clytia hemisphaericaexon
TCONS_00061508-exon-scaffold_358-1575043694:697091..697406TCONS_00061508-exon-scaffold_358-1575043694:697091..697406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:697091..697406 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.00062	2.90637	1.57184	1.89702	0	0	0	1.09269	0.838598	0.905982	0	0.997786	1.59398	0.270658	0.648944	0.803123	1.99084	4.6226	0	0.626158	2.42273	2.84768	0.867891	1.17265	0	0	2.28995	2.6182	3.01416	3.1702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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