TCONS_00061506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061506
Unique NameTCONS_00061506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061506 ID=TCONS_00061506|Name=TCONS_00061506|organism=Clytia hemisphaerica|type=transcript|length=369bp
CCGAAACCCAACGCAGGTGAGTAAACAAACTCACAGTTgaatgattcttt
tgttttggtaGCCCACGAGCGAAAGAAGTCAATCTCAAGCTTTTTCGTCG
GGATTTATCTATAGGAATATTCTGACAATTAGGCTAGGTGATAATTAGAT
TGATAATTACttttaaataatatatattatCGAAGttctcaagtaaaaaa
atcaaactcaaaCTCATGGTATCAACCCAAAACTTCTCTCAAGTTTAATG
TTCCATACGCGAAAGTTTTTCaagcaaataaaagagaaaattctTGGGTT
TCGACCGCTAGGATATCTTGTTTCGTTCGTGggctatcaaaacaaaagaa
tcatttAACTGTGAGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_358:654314..654682

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061506 ID=TCONS_00061506|Name=TCONS_00061506|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at scaffold_358:654314..654682 (Clytia hemisphaerica)
CAAACTCACAGTTaaatgattcttttgttttgatagccCACGAACGAAAC
AAGATATCCTAGCGGTCGAAACCCAagaattttctcttttatttgcttGA
AAAACTTTCGCGTATGGAACATTAAACTTGAGAGAAGTTTTGGGTTGATA
CCATGAGtttgagtttgatttttttacttgagaaCTTCGataatatatat
tatttaaaaGTAATTATCAATCTAATTATCACCTAGCCTAATTGTCAGAA
TATTCCTATAGATAAATCCCGACGAAAAAGCTTGAGATTGACTTCTTTCG
CTCGTGGGCtaccaaaacaaaagaatcattcAACTGTGAGTTTGTTTACT
CACCTGCGTTGGGTTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038590XLOC_038590Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061506-exon-scaffold_358-1491911889:654314..654682TCONS_00061506-exon-scaffold_358-1491911889:654314..654682Clytia hemisphaericaexon
TCONS_00061506-exon-scaffold_358-1510915933:654314..654682TCONS_00061506-exon-scaffold_358-1510915933:654314..654682Clytia hemisphaericaexon
TCONS_00061506-exon-scaffold_358-1575043694:654314..654682TCONS_00061506-exon-scaffold_358-1575043694:654314..654682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:654314..654682 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221736	0	1.00424	0.245624	1.49512	0.945169	0.855229	1.8682	1.86853	0.462894	1.34789	1.62442	1.76963	0.459446	0.755454	0.405359	0.332913	0.341225	0.23571	0.493307	1.92948	1.25484	1.01695	1.1557	0	1.06235	1.21618	0.324484	0.984438	2.00597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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