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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061502 ID=TCONS_00061502|Name=TCONS_00061502|organism=Clytia hemisphaerica|type=transcript|length=1608bp
GCgacacaacaaaagaaacctattaacTCGACAGACCTGGTATATGgtga
gccgtttttccattgttttcaagaaactgtttttccgtatctttacattc
ctctgaacCTTTTTAGAGTTTTTCGAGATGCGCTAATGTAGTTATCATCG
ACAATTTAACGGTCTGTCAGTACTGTATTTTTATTATCTTTCTGACCAAT
TGActggatgaaaaaaaaatgtatcatttttaatttaaCATATTGGGTGA
AGTTCGTTTTAGGGCGTGACAGTCTTGTCAACCGCCTTTGCCCCCAATAA
TTTACCATTGATCGGAGTATTACAGCTGGAACGATTGATTTATATATCAA
ATTTCAGTTATATTTAACTTTACTGAACTTATACTGAACATTGACTTTGA
TTATGGATTCTTTAACTGGTAAAAGAAAATTGATGGTTGGTCTAGTATGC
TCTGTTGGTTATGGCTTTCTATATATGGTCAGTAACGCGATTTATCAATA
CGTTTACAAAAACAGCCAAGTGGGCCAATCAGAAGCTATGTTGTTGCGTT
TTATCACTGGGCTTGTGGCAGTAGGGTCCAATTTGTTAACAGATGGCAAA
CGTCCTATTCCTAAGAACAAAACTGATATTTGTTTTCTCCTGATAGCTGC
CGTGTTTCGAATCGGAGGAGCGTTGCTTACTAATTTGTCTTTGAGGTACG
TCGATTTGGGAACGATAGCCGTCATTGCTGCCACGTCACCTGCCCTCTCC
ATTATCATGTCTTGGATATTTTTAAAAGAGAAGACCCGACTATCTGATAT
CTTACTTGGTCTGGCTTCATACGTCGGAGTTGTGTTAATCGTGTGGAATC
GATTGTCTGCGGTTAAACCGAATCCGTATCTGTATGTCATTGGCGTAGTG
TTCAGTTTTATGAGCATTTTTGCTTACTCGTTTTGTAATGTTTTGACGAG
AAAAATGGTCGGGAAAACCGATTTCCGACAATCGTTGTTCGTTATCAATT
TCGTTGGTGTTATTATTTTCGCATTTTCGCCGCTCGTTTTCGATGCTGAT
TTCGTTCTTACAAGATCGCCGTTGGAGTATTGTTATCTGGTACTTGCTGG
GGCAATGGTATGCTTAATAGCGCTGCTAATGGAAGTTTTGAGCTTGAAAT
GCTTGAACGTTGGTATCGTTTTATTGTTCCGGAACACTGAATTTTTATGG
GCCTATTTACACGATGTTATTTTTGATAACCTTTATCCAACACCTGCTAT
TATTTTAGGGTTACTCATTGTCATGTTGTCCATATCACTTATTGCTGTGA
ACTTGATGAAAGACATACCCTACTCGCAAATTGCGAGAAAAGGGTGGAGA
AAAGTTACCATGTGTGTTCGCTGATTGCTacataaatttaatttttgaaa
aatatttttagaataaagacgaaaagtttttttcgcgttggtgcaatgaa
TGCAGCATTCGACATAATGGCTGTGTCATTCCGGTGTAGTCTACTCTTAG
GGGCCTTATAAatggtaccccccccccttatatGATTTTAGGGTTATGGA
GCCCCtataaaatttgacttttgttgTAGAATTAATTGCTAAAATTATTG
AATACctg Run BLAST on NCBI protein sequence of TCONS_00061502-protein >TCONS_00061502-protein ID=TCONS_00061502-protein|Name=TCONS_00061502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MDSLTGKRKLMVGLVCSVGYGFLYMVSNAIYQYVYKNSQVGQSEAMLLRF
ITGLVAVGSNLLTDGKRPIPKNKTDICFLLIAAVFRIGGALLTNLSLRYV
DLGTIAVIAATSPALSIIMSWIFLKEKTRLSDILLGLASYVGVVLIVWNR
LSAVKPNPYLYVIGVVFSFMSIFAYSFCNVLTRKMVGKTDFRQSLFVINF
VGVIIFAFSPLVFDADFVLTRSPLEYCYLVLAGAMVCLIALLMEVLSLKC
LNVGIVLLFRNTEFLWAYLHDVIFDNLYPTPAIILGLLIVMLSISLIAVN
LMKDIPYSQIARKGWRKVTMCVR Run BLAST on NCBI transcript from alignment at scaffold_358:416986..418593 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061502 ID=TCONS_00061502|Name=TCONS_00061502|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at scaffold_358:416986..418593 (Clytia hemisphaerica)
cagGTATTCAATAATTTTAGCAATTAATTCTAcaacaaaagtcaaatttt
ataGGGGCTCCATAACCCTAAAATCatataaggggggggggtaccatTTA
TAAGGCCCCTAAGAGTAGACTACACCGGAATGACACAGCCATTATGTCGA
ATGCTGCAttcattgcaccaacgcgaaaaaaacttttcgtctttattcta
aaaatatttttcaaaaattaaatttatgtAGCAATCAGCGAACACACATG
GTAACTTTTCTCCACCCTTTTCTCGCAATTTGCGAGTAGGGTATGTCTTT
CATCAAGTTCACAGCAATAAGTGATATGGACAACATGACAATGAGTAACC
CTAAAATAATAGCAGGTGTTGGATAAAGGTTATCAAAAATAACATCGTGT
AAATAGGCCCATAAAAATTCAGTGTTCCGGAACAATAAAACGATACCAAC
GTTCAAGCATTTCAAGCTCAAAACTTCCATTAGCAGCGCTATTAAGCATA
CCATTGCCCCAGCAAGTACCAGATAACAATACTCCAACGGCGATCTTGTA
AGAACGAAATCAGCATCGAAAACGAGCGGCGAAAATGCGAAAATAATAAC
ACCAACGAAATTGATAACGAACAACGATTGTCGGAAATCGGTTTTCCCGA
CCATTTTTCTCGTCAAAACATTACAAAACGAGTAAGCAAAAATGCTCATA
AAACTGAACACTACGCCAATGACATACAGATACGGATTCGGTTTAACCGC
AGACAATCGATTCCACACGATTAACACAACTCCGACGTATGAAGCCAGAC
CAAGTAAGATATCAGATAGTCGGGTCTTCTCTTTTAAAAATATCCAAGAC
ATGATAATGGAGAGGGCAGGTGACGTGGCAGCAATGACGGCTATCGTTCC
CAAATCGACGTACCTCAAAGACAAATTAGTAAGCAACGCTCCTCCGATTC
GAAACACGGCAGCTATCAGGAGAAAACAAATATCAGTTTTGTTCTTAGGA
ATAGGACGTTTGCCATCTGTTAACAAATTGGACCCTACTGCCACAAGCCC
AGTGATAAAACGCAACAACATAGCTTCTGATTGGCCCACTTGGCTGTTTT
TGTAAACGTATTGATAAATCGCGTTACTGACCATATATAGAAAGCCATAA
CCAACAGAGCATACTAGACCAACCATCAATTTTCTTTTACCAGTTAAAGA
ATCCATAATCAAAGTCAATGTTCAGTATAAGTTCAGTAAAGTTAAATATA
ACTGAAATTTGATATATAAATCAATCGTTCCAGCTGTAATACTCCGATCA
ATGGTAAATTATTGGGGGCAAAGGCGGTTGACAAGACTGTCACGCCCTAA
AACGAACTTCACCCAATATGttaaattaaaaatgatacatttttttttca
tccagTCAATTGGTCAGAAAGATAATAAAAATACAGTACTGACAGACCGT
TAAATTGTCGATGATAACTACATTAGCGCATCTCGAAAAACTCTAAAAAG
gttcagaggaatgtaaagatacggaaaaacagtttcttgaaaacaatgga
aaaacggctcacCATATACCAGGTCTGTCGAgttaataggtttcttttgt
tgtgtcGC Coding sequence (CDS) from alignment at scaffold_358:416986..418593 >TCONS_00061502 ID=TCONS_00061502|Name=TCONS_00061502|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_358:416986..418593 (Clytia hemisphaerica)
TCAGCGAACACACATGGTAACTTTTCTCCACCCTTTTCTCGCAATTTGCG
AGTAGGGTATGTCTTTCATCAAGTTCACAGCAATAAGTGATATGGACAAC
ATGACAATGAGTAACCCTAAAATAATAGCAGGTGTTGGATAAAGGTTATC
AAAAATAACATCGTGTAAATAGGCCCATAAAAATTCAGTGTTCCGGAACA
ATAAAACGATACCAACGTTCAAGCATTTCAAGCTCAAAACTTCCATTAGC
AGCGCTATTAAGCATACCATTGCCCCAGCAAGTACCAGATAACAATACTC
CAACGGCGATCTTGTAAGAACGAAATCAGCATCGAAAACGAGCGGCGAAA
ATGCGAAAATAATAACACCAACGAAATTGATAACGAACAACGATTGTCGG
AAATCGGTTTTCCCGACCATTTTTCTCGTCAAAACATTACAAAACGAGTA
AGCAAAAATGCTCATAAAACTGAACACTACGCCAATGACATACAGATACG
GATTCGGTTTAACCGCAGACAATCGATTCCACACGATTAACACAACTCCG
ACGTATGAAGCCAGACCAAGTAAGATATCAGATAGTCGGGTCTTCTCTTT
TAAAAATATCCAAGACATGATAATGGAGAGGGCAGGTGACGTGGCAGCAA
TGACGGCTATCGTTCCCAAATCGACGTACCTCAAAGACAAATTAGTAAGC
AACGCTCCTCCGATTCGAAACACGGCAGCTATCAGGAGAAAACAAATATC
AGTTTTGTTCTTAGGAATAGGACGTTTGCCATCTGTTAACAAATTGGACC
CTACTGCCACAAGCCCAGTGATAAAACGCAACAACATAGCTTCTGATTGG
CCCACTTGGCTGTTTTTGTAAACGTATTGATAAATCGCGTTACTGACCAT
ATATAGAAAGCCATAACCAACAGAGCATACTAGACCAACCATCAATTTTC
TTTTACCAGTTAAAGAATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061502-exon-scaffold_358-1491911889:416986..418593 | TCONS_00061502-exon-scaffold_358-1491911889:416986..418593 | Clytia hemisphaerica | exon |
| TCONS_00061502-exon-scaffold_358-1510915933:416986..418593 | TCONS_00061502-exon-scaffold_358-1510915933:416986..418593 | Clytia hemisphaerica | exon |
| TCONS_00061502-exon-scaffold_358-1575043694:416986..418593 | TCONS_00061502-exon-scaffold_358-1575043694:416986..418593 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:416986..418593 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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