TCONS_00061500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061500
Unique NameTCONS_00061500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061500 ID=TCONS_00061500|Name=TCONS_00061500|organism=Clytia hemisphaerica|type=transcript|length=705bp
AATCAAATACTTATTAGTTTatcatatttcattttcagtttgaacatacg
TCAATCAACGTTACAAATACCTGTCGTCTGAATTATTGACCCCCTCAACC
GCTCTTGGGTAGTCTCAGTCATCATTTCGACCCTCATATAACAACATTCA
AACAGCATATATTCACCTATGACTACACGACCAAGGCGTTCAACACGTAA
AGACATTCACTACTCCATATTCAACAACACAGGACGTATTGTCGAGAAAA
TTGATTCATCAGTTGGAGATCACAACCTATCTTCAAATTATCAAACCATC
ATGACTGATCAGAGTCCAACAAAGGAAGAGATACTTCACCATGTCAACTC
CACAGCACTCATCACTGATGTACTTACCGGATTAGAGGAACTTACCGATA
TCATGAATGAACACAATATCAGTACAAGCTCAGACTCTGATAACAATGAA
ACAATACAATCACTCAAAGATCTTCGTCGTGACATCCGCCATCATATGAA
CCAACTAAAAGTCCTCAATCCAGAAGTTCATGACGTTCACTCTAAAACCT
ATGATTCAACCATAAAGGAAGTCGGTGAGTTCATTATTGAATGCAAAAAT
CACAAGACAAATCATCAGGCTCAAATGGAGAAGGCATTGGGTGATCAAAC
caagttacaagaaaaatcacaGCAATTTATTGTTGATGACACAAACATTC
TTCTG
Run BLAST on NCBI

protein sequence of TCONS_00061500-protein

>TCONS_00061500-protein ID=TCONS_00061500-protein|Name=TCONS_00061500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MTTRPRRSTRKDIHYSIFNNTGRIVEKIDSSVGDHNLSSNYQTIMTDQSP
TKEEILHHVNSTALITDVLTGLEELTDIMNEHNISTSSDSDNNETIQSLK
DLRRDIRHHMNQLKVLNPEVHDVHSKTYDSTIKEVGEFIIECKNHKTNHQ
AQMEKALGDQTKLQEKSQQFIVDDTNILL
Run BLAST on NCBI

transcript from alignment at scaffold_358:373748..374452

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061500 ID=TCONS_00061500|Name=TCONS_00061500|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at scaffold_358:373748..374452 (Clytia hemisphaerica)
CAGAAGAATGTTTGTGTCATCAACAATAAATTGCtgtgatttttcttgta
acttgGTTTGATCACCCAATGCCTTCTCCATTTGAGCCTGATGATTTGTC
TTGTGATTTTTGCATTCAATAATGAACTCACCGACTTCCTTTATGGTTGA
ATCATAGGTTTTAGAGTGAACGTCATGAACTTCTGGATTGAGGACTTTTA
GTTGGTTCATATGATGGCGGATGTCACGACGAAGATCTTTGAGTGATTGT
ATTGTTTCATTGTTATCAGAGTCTGAGCTTGTACTGATATTGTGTTCATT
CATGATATCGGTAAGTTCCTCTAATCCGGTAAGTACATCAGTGATGAGTG
CTGTGGAGTTGACATGGTGAAGTATCTCTTCCTTTGTTGGACTCTGATCA
GTCATGATGGTTTGATAATTTGAAGATAGGTTGTGATCTCCAACTGATGA
ATCAATTTTCTCGACAATACGTCCTGTGTTGTTGAATATGGAGTAGTGAA
TGTCTTTACGTGTTGAACGCCTTGGTCGTGTAGTCATAGGTGAATATATG
CTGTTTGAATGTTGTTATATGAGGGTCGAAATGATGACTGAGACTACCCA
AGAGCGGTTGAGGGGGTCAATAATTCAGACGACAGGTATTTGTAACGTTG
ATTGAcgtatgttcaaactgaaaatgaaatatgatAAACTAATAAGTATT
TGATT

Coding sequence (CDS) from alignment at scaffold_358:373748..374452

>TCONS_00061500 ID=TCONS_00061500|Name=TCONS_00061500|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_358:373748..374452 (Clytia hemisphaerica)
CAGAAGAATGTTTGTGTCATCAACAATAAATTGCtgtgatttttcttgta
acttgGTTTGATCACCCAATGCCTTCTCCATTTGAGCCTGATGATTTGTC
TTGTGATTTTTGCATTCAATAATGAACTCACCGACTTCCTTTATGGTTGA
ATCATAGGTTTTAGAGTGAACGTCATGAACTTCTGGATTGAGGACTTTTA
GTTGGTTCATATGATGGCGGATGTCACGACGAAGATCTTTGAGTGATTGT
ATTGTTTCATTGTTATCAGAGTCTGAGCTTGTACTGATATTGTGTTCATT
CATGATATCGGTAAGTTCCTCTAATCCGGTAAGTACATCAGTGATGAGTG
CTGTGGAGTTGACATGGTGAAGTATCTCTTCCTTTGTTGGACTCTGATCA
GTCATGATGGTTTGATAATTTGAAGATAGGTTGTGATCTCCAACTGATGA
ATCAATTTTCTCGACAATACGTCCTGTGTTGTTGAATATGGAGTAGTGAA
TGTCTTTACGTGTTGAACGCCTTGGTCGTGTAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038584XLOC_038584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061500-exon-scaffold_358-1491911889:373748..374452TCONS_00061500-exon-scaffold_358-1491911889:373748..374452Clytia hemisphaericaexon
TCONS_00061500-exon-scaffold_358-1510915933:373748..374452TCONS_00061500-exon-scaffold_358-1510915933:373748..374452Clytia hemisphaericaexon
TCONS_00061500-exon-scaffold_358-1575043694:373748..374452TCONS_00061500-exon-scaffold_358-1575043694:373748..374452Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061500-proteinTCONS_00061500-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:373748..374452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.80803	5.42233	4.85455	4.59838	5.33473	3.45419	3.6552	5.00482	2.12864	1.54268	3.41868	2.84368	1.93384	2.23788	1.15725	1.41809	0.534399	2.0301	1.3039	1.48474	1.71621	1.5935	0.660107	1.04149	2.93596	4.53816	1.59865	0.779756	1.32454	1.76013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012347Ferritin-rel
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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