TCONS_00061491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061491
Unique NameTCONS_00061491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061491 ID=TCONS_00061491|Name=TCONS_00061491|organism=Clytia hemisphaerica|type=transcript|length=747bp
AAACTGATAAGAAAAGCTCGTATTACAAGTATATAGCGAATTTGACCgtt
ttaagaaaagaaattgCTTTGCTAAACAGAAAATCTATTTTGTCAATGGA
ATTTGTGACGTTACTGATTTAGATTGGAGTAGAAAGAAAGAGCTTTACAA
TAGAAATATATATGCTATGATAAGCAGTTTAGATTGGCAGGCCTTGCAGT
GTTTTTGCTTTAGATTTCTTGATGGACTCGCACTATAAAAGAAAGCGTCA
TTCAATTAGATGTCGAATGTGTTCTGGTATATTATTTTTGGAAACGGGGA
AAAATTAGGGATGGTAGAAAACCGTAAACATGGTCTCAAAATACAGtaaa
aaatttaacatttgtCCATGAAGGGTGCATTCTCCGATTCTCCGCAGCCT
CTCAAGTTCGATAGGACTATCAATCTAGTGCTCCATAAGTGGAAACTTCT
TTGTTTTTACTATCAAACCAGGACGGGGGTACTAAGGTTAAGGGGTGCTA
GGGTATTTAGTGCTCCATAAGTGGAAATTTCTTTGTTATGCTATCAAACC
AGGACGGGCGTACTAAGGTTAAGGGGTGCTAGTCCTAACCCTTAgaaaga
ctgatttttgctgaaaagagagactttttcacaaatatttcttcgatttt
caagaaatttgtCCAATGCTTTCGAAAAATATTCTTGCCTAGGCTATGCT
TTAGTCTAAGAcaagtttcatctaagaggaacaaacgtgaagacgag
Run BLAST on NCBI

transcript from alignment at scaffold_358:241583..242329

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061491 ID=TCONS_00061491|Name=TCONS_00061491|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at scaffold_358:241583..242329 (Clytia hemisphaerica)
ctcgtcttcacgtttgttcctcttagatgaaacttgTCTTAGACTAAAGC
ATAGCCTAGGCAAGAATATTTTTCGAAAGCATTGGacaaatttcttgaaa
atcgaagaaatatttgtgaaaaagtctctcttttcagcaaaaatcagtct
ttcTAAGGGTTAGGACTAGCACCCCTTAACCTTAGTACGCCCGTCCTGGT
TTGATAGCATAACAAAGAAATTTCCACTTATGGAGCACTAAATACCCTAG
CACCCCTTAACCTTAGTACCCCCGTCCTGGTTTGATAGTAAAAACAAAGA
AGTTTCCACTTATGGAGCACTAGATTGATAGTCCTATCGAACTTGAGAGG
CTGCGGAGAATCGGAGAATGCACCCTTCATGGacaaatgttaaatttttt
aCTGTATTTTGAGACCATGTTTACGGTTTTCTACCATCCCTAATTTTTCC
CCGTTTCCAAAAATAATATACCAGAACACATTCGACATCTAATTGAATGA
CGCTTTCTTTTATAGTGCGAGTCCATCAAGAAATCTAAAGCAAAAACACT
GCAAGGCCTGCCAATCTAAACTGCTTATCATAGCATATATATTTCTATTG
TAAAGCTCTTTCTTTCTACTCCAATCTAAATCAGTAACGTCACAAATTCC
ATTGACAAAATAGATTTTCTGTTTAGCAAAGcaatttcttttcttaaaac
GGTCAAATTCGCTATATACTTGTAATACGAGCTTTTCTTATCAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038575XLOC_038575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061491-exon-scaffold_358-1491911889:241583..242329TCONS_00061491-exon-scaffold_358-1491911889:241583..242329Clytia hemisphaericaexon
TCONS_00061491-exon-scaffold_358-1510915933:241583..242329TCONS_00061491-exon-scaffold_358-1510915933:241583..242329Clytia hemisphaericaexon
TCONS_00061491-exon-scaffold_358-1575043694:241583..242329TCONS_00061491-exon-scaffold_358-1575043694:241583..242329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:241583..242329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.210818	0	0.079371	0.0555695	0.412991	0.467669	0.0878364	1.09643	0.455461	0.22467	0.683133	0	0	0.140199	0.0739213	0.0637582	0.282997	0	0	0.0708009	0.0631881	0	0	0.146385	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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