TCONS_00061483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061483
Unique NameTCONS_00061483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061483 ID=TCONS_00061483|Name=TCONS_00061483|organism=Clytia hemisphaerica|type=transcript|length=467bp
CCTTCAGGAATTATGGATTGAATGAAGATTGTGGTGTGGATCAAAAGATT
CTTGCCAGAGCGGTACGCTCAAACACATCCAAAAGTATCCAAAAGTAAGT
AGCTTCCACCCAAGGATGTGCTCATCATATATTACAAGAGGGGAATGCTT
TAATCTTGACTGCAAATTTACGCATGTTAAGGGAACCAAAAACGACATCA
TGTAGAAAGACTGATATCTCACctacaaaacaatgaaaatgttgatgtaA
TCTACCTTGACTTCAACAAGGCCTTTGACAAGGTGGACCATCAcatcttt
tatttatttatttattaaagaatTGAGGTTCAAGGCGCGCCGTGGGCCTC
TAAGAACCTATCTTTTTTACAAATGCTAGTTGTTATAATTTTCTTTAGGT
ATAGTTTTGTTCTGGGGCTTCCCCTGACTTTAAATTGAATGgttttgtct
ttcatttgagcattGAG
Run BLAST on NCBI

transcript from alignment at scaffold_358:38650..39116

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061483 ID=TCONS_00061483|Name=TCONS_00061483|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at scaffold_358:38650..39116 (Clytia hemisphaerica)
CTCaatgctcaaatgaaagacaaaacCATTCAATTTAAAGTCAGGGGAAG
CCCCAGAACAAAACTATACCTAAAGAAAATTATAACAACTAGCATTTGTA
AAAAAGATAGGTTCTTAGAGGCCCACGGCGCGCCTTGAACCTCAattctt
taataaataaataaataaaagatgTGATGGTCCACCTTGTCAAAGGCCTT
GTTGAAGTCAAGGTAGATtacatcaacattttcattgttttgtagGTGAG
ATATCAGTCTTTCTACATGATGTCGTTTTTGGTTCCCTTAACATGCGTAA
ATTTGCAGTCAAGATTAAAGCATTCCCCTCTTGTAATATATGATGAGCAC
ATCCTTGGGTGGAAGCTACTTACTTTTGGATACTTTTGGATGTGTTTGAG
CGTACCGCTCTGGCAAGAATCTTTTGATCCACACCACAATCTTCATTCAA
TCCATAATTCCTGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038567XLOC_038567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061483-exon-scaffold_358-1491911889:38650..39116TCONS_00061483-exon-scaffold_358-1491911889:38650..39116Clytia hemisphaericaexon
TCONS_00061483-exon-scaffold_358-1510915933:38650..39116TCONS_00061483-exon-scaffold_358-1510915933:38650..39116Clytia hemisphaericaexon
TCONS_00061483-exon-scaffold_358-1575043694:38650..39116TCONS_00061483-exon-scaffold_358-1575043694:38650..39116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:38650..39116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.864403	0.580823	2.0218	1.16855	0.957698	0.85422	0.372532	0.892878	1.70208	0.734615	0.450568	1.00536	0.86582	0.424402	0.802017	0.627529	0.858131	0.136625	0.209738	0.531343	0	0.298521	0.265505	0.240946	0.541206	0.368885	0.308751	0	0.0417106	0.38787
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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