TCONS_00061479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061479
Unique NameTCONS_00061479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061479 ID=TCONS_00061479|Name=TCONS_00061479|organism=Clytia hemisphaerica|type=transcript|length=446bp
TTCAAATATTTCTAACGAGTTCATATAGAAAGGGTGCAGACACTCACATT
TAAGAAATAGTGTCGCTGTTTCAAACGATATTGCAGCCACACCCAGCTGA
TACAATCTCCGTCCTCTTCATCCGTCATTTTCCCAGTTTCCTCTACTTGT
GTATCTGCGGGGGATTATTCTTCGGCCTGTTCTCTTCTTTGTTCCACAGC
AGGATGTTCCATCGCCTCCATCTCGATTTGATCCATCTCATCCTCTGTAT
CGAGGTATTCCTCATCCTCACTTGATTGTGCAGCAAAGTCTTCCTCCAAC
TCAATTGTCAGTTGCTCTTCAACGTCACTACTTTCATTCAATCCCACATC
ACTGTCTGCATCCTCTCTGTCGTTGATAACGTTTGATGGCCCTGGTTGTT
AACCATCATCCATACTTGCTTACTTTGGGACTGTGCTGGTTCCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_358:25822..26267

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061479 ID=TCONS_00061479|Name=TCONS_00061479|organism=Clytia hemisphaerica|type=transcript|length=446bp|location=Sequence derived from alignment at scaffold_358:25822..26267 (Clytia hemisphaerica)
ACAGGAACCAGCACAGTCCCAAAGTAAGCAAGTATGGATGATGGTTAACA
ACCAGGGCCATCAAACGTTATCAACGACAGAGAGGATGCAGACAGTGATG
TGGGATTGAATGAAAGTAGTGACGTTGAAGAGCAACTGACAATTGAGTTG
GAGGAAGACTTTGCTGCACAATCAAGTGAGGATGAGGAATACCTCGATAC
AGAGGATGAGATGGATCAAATCGAGATGGAGGCGATGGAACATCCTGCTG
TGGAACAAAGAAGAGAACAGGCCGAAGAATAATCCCCCGCAGATACACAA
GTAGAGGAAACTGGGAAAATGACGGATGAAGAGGACGGAGATTGTATCAG
CTGGGTGTGGCTGCAATATCGTTTGAAACAGCGACACTATTTCTTAAATG
TGAGTGTCTGCACCCTTTCTATATGAACTCGTTAGAAATATTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038563XLOC_038563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061479-exon-scaffold_358-1491911889:25822..26267TCONS_00061479-exon-scaffold_358-1491911889:25822..26267Clytia hemisphaericaexon
TCONS_00061479-exon-scaffold_358-1510915933:25822..26267TCONS_00061479-exon-scaffold_358-1510915933:25822..26267Clytia hemisphaericaexon
TCONS_00061479-exon-scaffold_358-1575043694:25822..26267TCONS_00061479-exon-scaffold_358-1575043694:25822..26267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:25822..26267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29939	0.291953	0	0	0	0.159522	0.384913	0	0.378436	0.312502	0.303322	0.299088	0.199115	0.103391	0.0850018	0.36488	0	0.115181	0	0	0.144734	0	0.171637	0	1.92865	2.43847	0	0	0.16615	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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