TCONS_00061476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061476
Unique NameTCONS_00061476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061476 ID=TCONS_00061476|Name=TCONS_00061476|organism=Clytia hemisphaerica|type=transcript|length=893bp
GAGTGCAAAGAATATGGAAAGGCGTTGGAATTTTATCAAAGAGAACTTAA
ATTGAGAAAGAATGATTTGAAGGAGAAAAGTTCAACGTACTGTGCTATCG
GCAAATGTTTAGAAGACTTGGAAAGACCTTACCCAGAGATCAAGGAGATC
TACATGAAAGCCATTGAGTGTGCTCAAAGTAGCGGNTTTGGAAAGACCTT
ACCCAGAAATCAAGGAGATCTACATGAAAGCCATTGAGTGTGCTCAAAGT
AGCGGGCATATCAAAACCATTTTGAAAGCGTACAAGGACTGGGCAGAAGT
CGTGAAAGTCAATGAAGGACCCATCATGCACGAGAACGTGTTGAAAAAAA
TAGCGACGCTTCGCCAAGAGATGGAAACGGAAGGGGATGATAGCCAGGAA
GCTGTTTCTTCGCCATTGGACGATGATGGTTCAGATGACGTCCATTTGAC
GCCCGATGAGGTCGAAATGCTGGAAAGTGATGACGAAGGGAATGACGAGG
AAGAAAACCACTTATCTTCAACTTCATCTACAAAACAAAGAACTTCACGG
GAAAGTAAAAAGAAGGTGAAGAAAGTCAACGAACGTGGTGAGACACCTCT
CCATGTTGCAGCAATTAATGGAAACATCGCCAGAGTTGAAGAACTATTGA
AACtgGGTGCAGACGTCAAAGCTAGAGACTATTGCGGATGGCAGCCTATT
CATGAGGCCTCCAACCATGGCTTTTATGATATCGTAAAACTGTTGCTTGA
ATACGGTTCTGACGTTAACGATCCGGGCGGTGCACATTGTGGCGGTATTA
CGCCACTCCACGACGCCTCACAAAACGGTCATTTGAAAGTCGTTAAACTT
CTTTTGGAATACAATGCAGATGTCTACGTCAAATGCAAAGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_358:917648..922943-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061476 ID=TCONS_00061476|Name=TCONS_00061476|organism=Clytia hemisphaerica|type=transcript|length=5296bp|location=Sequence derived from alignment at scaffold_358:917648..922943- (Clytia hemisphaerica)
GAGTGCAAAGAATATGGAAAGGCGTTGGAATTTTATCAAAGAGAACTTAA
ATTGAGAAAGAATGATTTGAAGGAGGTAAAACCGATTAATGATCTCACTT
TTTAATCTCATTAATTACATTGTGTCCATTCCCTAAACATTGAGGATTTT
GTCACTCTTCAGGCAAAATTCCAAGTACTTTGCCCTCTCGCCGTTCTTTG
ATCTAGAAATCAAGCCAATGGCCAAGTACTCACTTCTCTTGGGATTGGTT
TAAGATTCAATCACATGATCAAAAAGTGAGCTAAACAAACTAATCTCATT
AGATTTTGTAACGGCCACAGGAAAGTGCTTGGAATTTTCGCTGCTCTTAT
CCCTAGCATTTTGGATACACTTCCTTTCTTTAACGATACCTTGTTAATTT
ACTAACCACTCTTTGAACCGAAAGCAGAAGAAGGTCAAAGCCTATTGGGC
TCTTCCAGAAAAAATTTTTACATGGGGGGGGGGGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGAGGATATATTGTCCGGGGGTAGCAAAAAATC
ATCAAAATTTGCCTTGTCCAAGGTGTAGATTTACTCTGTCCGGGGGTAAT
TTGGTGTGTCCGGGGGGTCAGCAGATGATTGTCCGGGGGGGTAAAACCTA
TTGTCCGGGGGGGCCAAAAGTCACCCTGTCCGGGGGGTAAATCACTAAAA
AAATTTATATCCTCCACCCCCCATGTAAAATTTTTTTTCTGGAAGAGCCC
ATTTCTCTCAATTATTTATTTTCCGTATCAAGCAAAGGCATAACTAAGTT
AGGTTTTAGTACGGGATTTTTTTTTTTGAATTTGATGTTGGATCATTTAT
CTCCAAGCTTCTAAATTGGAAAATCATTTTCCTATCAATATACCTTTTCG
ACCGTAGTCACGCGGTCAGGGGCGTGCCACTTTATTATTTAATTTACCAC
CCTAAACTCGATCCAATCCTGTTTTTACACTTTTTTCTATTCTCTTTAAG
TGCGAATTTAAAAAAAAACAGGGACGGTTTTAGGGTGGTAAAACGGCAAT
TGACGGCTATGGTCGAAAAGGTGTATATATTCTTACAAATCCTTTTCTTA
GTCAGTGTAATTTTTTTTACAAGGAACTTCTAATTTCCATCTTATAGAAA
AGTTCAACGTACTGTGCTATCGGCAAATGTTTAGAAGACTTGGAAAGACC
TTACCCAGAGATCAAGGAGATCTACATGAAAGCCATTGAGTGTGCTCAAA
GTAGCGGNTTTGGAAAGACCTTACCCAGAAATCAAGGAGATCTACATGAA
AGCCATTGAGTGTGCTCAAAGTAGCGGGCATATCAAAACCATTGTAAGTA
TCAGATGCGGATCGAAGAGATATTCAAAATTTATGACGGAGAGTCTTGAT
TTCGTTATAAAGAGTATGGCTGAAAGAAACATTCCTTCGTAAATTTTGAA
CTGCCTATAGATCCGCCACTGAGTATCTATATTTTCAAGGGTTTTCGGGA
TTTCTTGTTTATTTTCTATTTAAATGTTTTCTGTTGATCAATCAGGTAGG
TCCATATAAGTATATCACTTGTTTCAGTTGAAAGCGTACAAGGACTGGGC
AGAAGTCGTGAAAGTCAATGAAGGACCCATCATGCACGAGAACGTGTTGA
AAAAAATAGCGACGCTTCGCCAAGAGATGGAAACGGAAGGGGATGATAGC
CAGGAAGCTGTTTCTTCGCCATTGGACGATGATGGTTCAGATGACGTCCA
TTTGACGCCCGATGAGGTCGAAATGCTGGAAAGTGGTAAATACTCATTAT
TATCTTACTTTTGTGTTTTATTGTGGATTGTAGAGGGATTCACGACAGGC
AATGGGCTGGGCACCAATCAAGGTATACGGTGGCATAAGTTTGGCGTTAA
ATTATAACTTGTCTCTTTGTTTGAGAGAAAGGCCTTGTAATTTTCAACTT
CAGTTGAGCTATAATCTGACAATGTTTGTCTGTCTGTGTGTATCTGTCTG
TCTGTGTGTCACAAACTTTAGGGCAGCCTGGAGACATCAAAAATGGTTGG
ATTTGACTAATATTTAGCACATTTGTTCCTTGGGTGAATATATGGGGGTG
TTTTTTGGGAAGAGTTTTTCTCAATTCGAATTTATTGTGGGGATTTTTTT
TGTTTTATTCGAGCATAAAATTTGCGTTGAAAGATAGAAGTTGAGCCTAG
TATGAATGATCCGGTTGGTCGAGCCGAATGAACTACTTTTACACAACCGT
TTCTACAATCCCACACAAAATATTTGAGACAAAAGGCGATTTTAAACACC
ACAAATGATTTTTAAGCGCGTTAAACTGGAGTTGGAAAGTAGAGTTTTAA
CTCTAAGTTTTAACATGAGACTTAAGACTTAGAAATCAGGATTTAAAAGC
TTAAAGTTGTTTCGATCAGGCTTGAAATATAGCCTAGAAGCCACCGAACC
CCTCAAAAATCAAAATATTCAATGCAAAAAAAAGTGGAAGTACTGAAGCT
GCAATTCTCGCCCGAACTTTAATTTCTGAAAACGTTAAAATACACTAAAG
TCTCAATATATTTCGAGCAAGATTGTAAGTGTTCATTTCTCTCTCTTTCT
CTCTTACAGATGACGAAGGGAATGACGAGGAAGAAAACCACTTATCTTCA
ACTTCATCTACAAAACAAAGAACTTCACGGGAAAGTAAAAAGAAGGTACA
GTACCGGGTGCGCCAAAAAAAAAGTATACAAGATTTCAGGATTTAGATTT
TTTGTTCATTCTTTTTTTATTGTATAGAGGATGCTTTAACTTGAATTTTG
AGCTATCATACATTAAATTTGAAAAAGTAGTTTTGACTTTTTTTCCAGGT
CGAAATTTCAAAAAATCATTAAAAACAGCGAGCAAACTTTTCTCTTAACA
CTTACCTTCCTTACACATAAAAATACCAAAAATCTTTGGTGCACCCGGTA
GAATCTTTTCATTTCGAACCTCTTGAACATGAATAGATGGATAGAGTCGA
TATTTTACGTGGATAGCCCAGTAATCTAGGACTTTTAGACAGTCTTTCGT
TTGTTTTCACGGGGTCCACGGCCAGCCGGCTCGGCTATCTATGAACTGAA
CGGAAAAGCGGAGATTTGAACCGCGACCATTTGAACCGCGACCATTTGGC
CATCGCTCCATAAATATCTCCTTAACTTGAACAAGTTTTATGCTATCGTC
TCTTCAGTTAACAATACCTTATAAACCTCAATCTACATCTCGAAATTTTT
ATAATACGGACAAATTGGTACTTTCCGTGTGTCTTCAAGTTATAGATAGA
AACTCAACTGTATTATGAAAAAAATCTTTCTTTAATATGTGATACCAAAG
CAAAGGCATCGCGCAGCCTTGCGTCGCATTTTTATTTTGTCATGGATTTC
TCTCCCTCCTTCCAAGGAATATACCTAGAAATGACCTTCAAAATCCTCAA
TGTTAAAGTATAGCACCGGTCTTGATTTAATGGGGTTATTCGGAAAATTT
GCAAAAGTATTGATCATATCAATGCAACGTCCATACAGTTCGAGCCTTAG
ATGAAATAGATGAAATATCTTTAAGTCAATGTTTGAATCTCTATGAAAAT
ATAATTATACCATTTATGTGAGCGATTCCGAGCAGACGTCAACTCGATCG
AACCTTTTTAAAATTGTTATCAAATAATCATGAACCACGACGCTGTTAGA
TCCCTGCTATTAGAATCCAGTCAATGACGTAATGTAACTTTTTCTCTAGA
ATGGCGGATGCTTGTTTAGGAATTTCTGTAACATCCATTCTCTTTCCCAT
TTAAGGTGAAGAAAGTCAACGAACGTGGTGAGACACCTCTCCATGTTGCA
GCAATTAATGGAAACATCGCCAGAGTTGAAGAACTATTGAAACTGGTAAT
ATATTTTTTCATTAATTACGTCACGAGCAACGCTTACCTCGTTTTTAAAA
TGTTGATATGGTAATTGATTCACAGAGGAGCTCATAAGAAGTTCACTTTA
TTTATAAAAGTAACGCTTGAAGACTCTAAGGATTCAATCATCTTGCTAAC
GAAGCAGTCATAGCACTCAAAATAGTTTAAGAAACTATTGAAATTAGTTA
TTCTGCACTTCTTCAATCTTCATTGAGATAAACTTAATTAACACTCTCAC
TACTGGAGATCTTTTGAGAAATCCAAAAATTATCCCTCTGAAATTTCATC
GAAATTTTTACTTTGAAAGGCTGAAAAATTTGCTTCGAATTCCTTCAAAT
TGTAAACCGATGCACGCACAATTTAAATTAGATTTCAAAATACAATAAAA
AAACCAACAAAAAACTCTGTATTGAAAGCTATTGCCATTTAAAGTACTGC
AACGTATGTTTCTTAGTTCTTTCTGCAGAGGATATTGCATAAATGTAATA
CTTGACTTCAGCTATAAGGCATCGATGCCCCTCGCTCTTCCATTACTCCT
TGCTTGACATGCATCCTATCTACTGTCCTTCTCACTGCTGTCGACAGTGG
AATGAATTTTAATATCGAATTCGGAACTCAATTTATTCTCTCTTATGTTT
TAAGGGTGCAGACGTCAAAGCTAGAGACTATTGCGGATGGCAGCCTATTC
ATGAGGCCTCCAACCATGGCTTTTATGGTATAGTTTTTTAATAACAATAG
ATTTTCTCTCTATTGACTTTCATGTCATTTAGACTTTAAGCTTTGAGCCG
AAATACTTGAGAGAAATCTCTTGAATGAGAAATGAAGCCACTTATCTCCA
ATCCAGATCCCGGGTCGGTTTTTCAGATTTTATGGTAAATAAAGCCTTTG
ATGACTCAGAGGGAGAACAGATTCTATCAAGTCGTTGTGTGGATTAAGTC
TCCATTCACATTAATTGTCTTCACAAAGAGGTAGAAACTTCGCCACAGTG
TTAAAGAAAGCTCAAATTTTTCCTTTACTTTATAAGCTGCGCTAATTTTA
AAGGTCTGGAGACTTTCCTTTTATTTTGTAGATATCGTAAAACTGTTGCT
TGAATACGGTTCTGACGTTAACGATCCGGGCGGTGCACATTGTGGCGGTA
TTACGCCACTCCACGACGCCTCACAAAACGGTCATTTGAAAGTCGTTAAA
CTTCTTTTGGAATACAATGCAGATGTCTACGTCAAATGCAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038560XLOC_038560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061476-exon-scaffold_358-1575043694:922869..922943TCONS_00061476-exon-scaffold_358-1575043694:922869..922943Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1575043694:921451..921646TCONS_00061476-exon-scaffold_358-1575043694:921451..921646Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1575043694:921009..921216TCONS_00061476-exon-scaffold_358-1575043694:921009..921216Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1575043694:920099..920184TCONS_00061476-exon-scaffold_358-1575043694:920099..920184Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1575043694:918899..918988TCONS_00061476-exon-scaffold_358-1575043694:918899..918988Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1575043694:918167..918239TCONS_00061476-exon-scaffold_358-1575043694:918167..918239Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1575043694:917648..917812TCONS_00061476-exon-scaffold_358-1575043694:917648..917812Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:922869..922943TCONS_00061476-exon-scaffold_358-1510915933:922869..922943Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:921451..921646TCONS_00061476-exon-scaffold_358-1510915933:921451..921646Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:921009..921216TCONS_00061476-exon-scaffold_358-1510915933:921009..921216Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:920099..920184TCONS_00061476-exon-scaffold_358-1510915933:920099..920184Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:918899..918988TCONS_00061476-exon-scaffold_358-1510915933:918899..918988Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:918167..918239TCONS_00061476-exon-scaffold_358-1510915933:918167..918239Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1510915933:917648..917812TCONS_00061476-exon-scaffold_358-1510915933:917648..917812Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:922869..922943TCONS_00061476-exon-scaffold_358-1491911889:922869..922943Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:921451..921646TCONS_00061476-exon-scaffold_358-1491911889:921451..921646Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:921009..921216TCONS_00061476-exon-scaffold_358-1491911889:921009..921216Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:920099..920184TCONS_00061476-exon-scaffold_358-1491911889:920099..920184Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:918899..918988TCONS_00061476-exon-scaffold_358-1491911889:918899..918988Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:918167..918239TCONS_00061476-exon-scaffold_358-1491911889:918167..918239Clytia hemisphaericaexon
TCONS_00061476-exon-scaffold_358-1491911889:917648..917812TCONS_00061476-exon-scaffold_358-1491911889:917648..917812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:917648..922943 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.937621	0.207538	0.433551	0.769586	2.33824	1.53402	0.724679	1.31938	0.582533	0.215392	0.578014	0	0.136874	0.133731	0.396824	1.23379	1.06786	1.59003	0.26874	0.427191	0.513893	0.238772	0.292647	0.64917	5.54185e-07	0	0.421125	0.462927	0	0
Blast
[Close]
BLAST of TCONS_00061476 vs. Swiss-Prot (Human)
Match: TONSL (Tonsoku-like protein OS=Homo sapiens GN=TONSL PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.379e-29
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 2 
Query:  578 NERGETPLHVAAINGNIARVEELLKLGADVKARDYCGWQPIHEASNHGFYDIVKLLLEYGSDVNDPGGAHCGGITPLHDASQNGHLKVVKLLLEYNADVYVKCKE 892
            N+ GET LH A I G + RV++L++ G  +  RDYCGW P+HEA N+G  +IV+ LL++G+ V+DPGG  C GITPLHDA   GH +V +LLLE  A V ++ ++
Sbjct:  526 NDMGETLLHRACIEGQLRRVQDLVRQGHPLNPRDYCGWTPLHEACNYGHLEIVRFLLDHGAAVDDPGGQGCEGITPLHDALNCGHFEVAELLLERGASVTLRTRK 630
The following BLAST results are available for this feature:
BLAST of TCONS_00061476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TONSL3.379e-2950.48Tonsoku-like protein OS=Homo sapiens GN=TONSL PE=1... [more]
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