TCONS_00061471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061471
Unique NameTCONS_00061471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061471 ID=TCONS_00061471|Name=TCONS_00061471|organism=Clytia hemisphaerica|type=transcript|length=427bp
ttttaGCATTTGCTGGAAGATAATTGGCAGTTTACAGgAATAGCAAGTCA
GCCACCATCATGAGAGCATTCGTCGTTTGCACCCTTCTCTTGTGTGCCAC
CCTTTACGCCACGCACGCCCTAAgtatcaatgacgtcatcaatgaaaATT
ACGCCGATGAGTTGTACCAAAAAGAGGCTGTGAAACCTGAATGCAACGAT
TATTTCCTTCCATGTAAAAGTGATTCTGATTGCTGCAAAGGATTAAGCTG
CAAGCAACCAAAGGAGTTTGAAGAATCAGTCTGTTTGATGTGATAAAGAA
AGAGATTGTAAATGTTATACATTGAGAAACAATATTAATTCAAAAATATA
ACAACTAtattttctcttgtttttgtcttgggttttaattaattgtcttc
tGGTCACTAGTATTCAGTATTTAGtgg
Run BLAST on NCBI

transcript from alignment at scaffold_358:852153..852896-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061471 ID=TCONS_00061471|Name=TCONS_00061471|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at scaffold_358:852153..852896- (Clytia hemisphaerica)
TTTTAGCATTTGCTGGAAGATAATTGGCAGTTTACAGGTAAAATGCTCTA
TAAATAAGCATGCTTAGGTTCAGTTGCCAAATTTCGTGATGGTGACATTA
TTCTTAATTTTTTGGCAAATTTCATCATGAATATTCTTACAAAATATATT
CTTATAAAGAAAGCGTATACTTTCGTATAAAAAGGGCCGATAATGATGAT
AAATTAGTGAGTTAGAGGGGATTGGAATAAAAATGTTCTGAAAGGGAAGA
CTCCACAAGGATCTTTGAAAAAAAACGAGGAAATTGATTAGCGGGAAATA
GGGTAGGGGTATTTTAGGTACCCAAGAGTACAAATTTAATTTCTTTAATT
TTAGGAATAGCAAGTCAGCCACCATCATGAGAGCATTCGTCGTTTGCACC
CTTCTCTTGTGTGCCACCCTTTACGCCACGCACGCCCTAAGTATCAATGA
CGTCATCAATGAAAATTACGCCGATGAGTTGTACCAAAAAGAGGCTGTGA
AACCTGAATGCAACGATTATTTCCTTCCATGTAAAAGTGATTCTGATTGC
TGCAAAGGATTAAGCTGCAAGCAACCAAAGGAGTTTGAAGAATCAGTCTG
TTTGATGTGATAAAGAAAGAGATTGTAAATGTTATACATTGAGAAACAAT
ATTAATTCAAAAATATAACAACTATATTTTCTCTTGTTTTTGTCTTGGGT
TTTAATTAATTGTCTTCTGGTCACTAGTATTCAGTATTTAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038557XLOC_038557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061471-exon-scaffold_358-1575043694:852860..852896TCONS_00061471-exon-scaffold_358-1575043694:852860..852896Clytia hemisphaericaexon
TCONS_00061471-exon-scaffold_358-1575043694:852153..852542TCONS_00061471-exon-scaffold_358-1575043694:852153..852542Clytia hemisphaericaexon
TCONS_00061471-exon-scaffold_358-1510915933:852860..852896TCONS_00061471-exon-scaffold_358-1510915933:852860..852896Clytia hemisphaericaexon
TCONS_00061471-exon-scaffold_358-1510915933:852153..852542TCONS_00061471-exon-scaffold_358-1510915933:852153..852542Clytia hemisphaericaexon
TCONS_00061471-exon-scaffold_358-1491911889:852860..852896TCONS_00061471-exon-scaffold_358-1491911889:852860..852896Clytia hemisphaericaexon
TCONS_00061471-exon-scaffold_358-1491911889:852153..852542TCONS_00061471-exon-scaffold_358-1491911889:852153..852542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:852153..852896 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	171.011	132.972	0	0.694192	48.9901	61.2326	795.965	657.14	313.91	298.4	69.2274	99.0718	75.1334	85.1439	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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