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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061461 ID=TCONS_00061461|Name=TCONS_00061461|organism=Clytia hemisphaerica|type=transcript|length=3442bpRun BLAST on NCBI protein sequence of TCONS_00061461-protein >TCONS_00061461-protein ID=TCONS_00061461-protein|Name=TCONS_00061461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp MDAFDQDVDVDNIGDFENERARNILQNYEFMKACGLPVKQPVFGKKVEKIRun BLAST on NCBI transcript from alignment at scaffold_358:672221..682461- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061461 ID=TCONS_00061461|Name=TCONS_00061461|organism=Clytia hemisphaerica|type=transcript|length=10241bp|location=Sequence derived from alignment at scaffold_358:672221..682461- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:672221..682461- >TCONS_00061461 ID=TCONS_00061461|Name=TCONS_00061461|organism=Clytia hemisphaerica|type=CDS|length=17232bp|location=Sequence derived from alignment at scaffold_358:672221..682461- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061461 vs. Swiss-Prot (Human)
Match: ZNF45 (Zinc finger protein 45 OS=Homo sapiens GN=ZNF45 PE=1 SV=2) HSP 1 Score: 383.259 bits (983), Expect = 1.187e-117 Identity = 199/414 (48.07%), Postives = 250/414 (60.39%), Query Frame = 2
Query: 1292 FTCRYCSISYCHDKYLQKHLKF-CRKLPIESSYKSNEADSKLKLKHVRTNDVKVRRKGKTNDGNDANISSNKPFVCTVCGKVSNSFSNLQTHLRTHTGEKPYKCDICGKGFNVSCNLQRHLRTHTGDKPYKCDICGKGSNSSCDLTKHLRTHTGEKPYKCDTCGKGFNHNQNLQAHLRTHTGEKPYKCDFCGKGFNQSSHLQKHLRTHNGEKPYKCEICGKGFNQTPHLQKHLRTHNGEKPYKCDTCGKRFNQTPHLQTHLRTHTGEKPYKCEICGKRFNQTPHLQTHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK------LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQ 2512
+ C C + + YLQ HLK K P YK E + ++ + KP+ C CGK + S+L H R HTGEKPYKC+ CGKGF+V +LQ H +HTG+KPYKC+ CGKG + +L H R HTGEKPY+CD CGKGF+ + + H R HTGEKPYKC+ CGKGF+Q+S+L H R H GEKPYKC CGKGF+++ L H R H GEKPYKC+ CGK F+Q LQ H R HTGEKPY+C CGK F+ LQ H R HTGEKPY+C+ CGKGF ++ + H HTGEKPY+CD+CGK+F SYLQ H R HTGE+ + W S +++ H R HT EKPYKC+ CGK FS S L H R H++++
Sbjct: 276 YKCEECGVGFSQRSYLQVHLKVHTGKKP----YKCEECGKSFSWRSRLQAHERIH-------------TGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSS------YLQAHQRVHTGEKPYKCEECGKGFSWSSSLIIHQRVHADDE 666 HSP 2 Score: 357.451 bits (916), Expect = 3.490e-108 Identity = 186/347 (53.60%), Postives = 225/347 (64.84%), Query Frame = 2
Query: 1493 SSNKPFVCTVCGKVSNSFSNLQTHLRTHTGEKPYKCDICGKGFNVSCNLQRHLRTHTGDKPYKCDICGKGSNSSCDLTKHLRTHTGEKPYKCDTCGKGFNHNQNLQAHLRTHTGEKPYKCDFCGKGFNQSSHLQKHLRTHNGEKPYKCEICGKGFNQTPHLQKHLRTHNGEKPYKCDTCGKRFNQTPHLQTHLRTHTGEKPYKCEICGKRFNQTPHLQTHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 2530
+ KP+ C CG + S LQ HL+ HTG+KPYKC+ CGK F+ LQ H R HTG+KPYKC+ CGK + S L H R HTGEKPYKC+ CGKGF+ +LQAH +HTGEKPYKC+ CGKGF ++S+L H R H GEKPY+C+ CGKGF+++ H R H GEKPYKC+ CGK F+Q +L H R HTGEKPYKC CGK F+++ L H R HTGEKPYKC+ CGK F Q L H R HTGEKPY+C CGK F+ S LQ H R HTGEK Q K F F+ H HT EKPY+CD+CGK F S L+ H R H+ E+ C +
Sbjct: 271 TGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTGEKPYQCEECGKGFCRASNFL-AHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEE 616 HSP 3 Score: 328.176 bits (840), Expect = 1.577e-97 Identity = 176/352 (50.00%), Postives = 211/352 (59.94%), Query Frame = 2
Query: 1478 NDANISSNKPFVCTVCGKVSNSFSNLQTHLRTHTGEKPYKCDICGKGFNVSCNLQRHLRTHTGDKPYKCDICGKGSNSSCDLTKHLRTHTGEKPYKCDTCGKGFNHNQNLQAHLRTHTGEKPYKCDFCGKGFNQSSHLQKHLRTHNGEKPYKCEICGKGFNQTPHLQKHLRTHNGEKPYKCDTCGKRFNQTPHLQTHLRTHTGEKPYKCEICGKRFNQTPHLQTHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 2530
N + KP+ C C FS+LQ H R H+ K Y D + F+ +L H R TG+ PYK + CG+ S L HTGEKPYKC+ CG GF+ LQ HL+ HTG+KPYKC+ CGK F+ S LQ H R H GEKPYKC CGK F+ + HL H R H GEKPYKC+ CGK F+ HLQ H +HTGEKPYKCE CGK F + +L H R HTGEKPY+CD CGKGF +S D H R HTGEKPYKC+ CGK F+ +S L H R HTGEK + K F + H R HT EKPYKC+ CGKAFS S L+ H R H+ E+ C +
Sbjct: 182 NQRAHAGEKPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQRVPTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSS-DLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAE 532 HSP 4 Score: 319.701 bits (818), Expect = 1.595e-94 Identity = 176/366 (48.09%), Postives = 219/366 (59.84%), Query Frame = 2
Query: 1430 RTNDVKVRRKGKTNDGNDANI----SSNKPFVCTVCGKVSNSFSNLQTHLRTHTGEKPYKCDICGKGFNVSCNLQRHLRTHTGDKPYKCDICGKGSNSSCDLTKHLRTHTGEKPYKCDTCGKGFNHNQNLQAHLRTHTGEKPYKCDFCGKGFNQSSHLQKHLRTHNGEKPYKCEICGKGFNQTPHLQKHLRTHNGEKPYKCDTCGKRFNQTPHLQTHLRTHTGEKPYKCEICGKRFNQTPHLQTHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTGEK-LQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQ 2512
+ +D+ + +G +N + + + KP+ C K + S+LQ + R H GEKPYKC+ C F +LQ H R H+ K Y D + + L H R TGE PYK + CG+ + + QA L HTGEKPYKC+ CG GF+Q S+LQ HL+ H G+KPYKCE CGK F+ LQ H R H GEKPYKC+ CGK F+ + HL H R HTGEKPYKCE CGK F+ HLQ H +HTGEKPYKC+ CGKGF ++ +L H R HTGEKPY+CD CGK F+ SS HFR HTGEK + K F + H R HT EKPYKC CGK FS SDL H R H+ E+
Sbjct: 134 KRDDLHYKDEGFSNQSSHLQVHRVHTGEKPYKGEHCVKSFSWSSHLQINQRAHAGEKPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQRVPTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTGEKPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLL-AHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEK 498 HSP 5 Score: 174.481 bits (441), Expect = 4.821e-45 Identity = 104/229 (45.41%), Postives = 130/229 (56.77%), Query Frame = 2
Query: 1865 KGF-NQSSHLQKHLRTHNGEKPYKCEICGKGFNQTPHLQKHLRTHNGEKPYKCDTCGKRFNQTPHLQTHLRTHTGEKPYKCEICGKRFNQTPHLQTHLRTHTGEKPYKCDICGKGFIQSGDLTKHLRTHTGEKPYKCDICGKKFNDSSYLQRHFRSHTG------EKLQM*YLWKSFE*FW*FVKTHLRTHTSEKPYKCDICGKAFSVPSDLKRHHRTHSNEQV*YCND 2530
+GF NQSSHLQ H R H GEKPYK E C K F+ + HLQ + R H GEKPYKC+ C F + LQ H R H+ K Y + + F+Q HL H R TGE PYK + CG+ +S L HTGEKPYKC+ CG F+ SYLQ H + HTG E+ + W+S ++ H R HT EKPYKC+ CGK+FS S L H R H+ E+ C +
Sbjct: 143 EGFSNQSSHLQVH-RVHTGEKPYKGEHCVKSFSWSSHLQINQRAHAGEKPYKCEKCDNAFRRFSSLQAHQRVHSRAKSYTNDASYRSFSQRSHLPHHQRVPTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRS------RLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEE 364 The following BLAST results are available for this feature:
BLAST of TCONS_00061461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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