TCONS_00061447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061447
Unique NameTCONS_00061447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061447 ID=TCONS_00061447|Name=TCONS_00061447|organism=Clytia hemisphaerica|type=transcript|length=948bp
TTAATGAAGTAATTCACTCTGCAGTATATCGAGCACTTTAATTGTGAAGA
GACAATTTAAAAGAATGAGGCAACATTATACTTAATTGGAATTatgaaaa
aattgttcttttagtcaaataaaaaggaaaaataaaaaaaggaacaGATC
ATTTACAATGGGGACTCTATCAAGAATTATTGGTATGTCCTTTTTGGCTG
CCATTGGTATTCTGCTGGTCGTCCTCGGATGTGTTTTAGATgaattcaaa
acagaaaaagGaccatGGTGGATAATGTTTAACTTATTTTTCTACATACT
TGCACCAATCCCTACATTGATTTGCAAAAGACTTGGGAATGATTTTTCCT
CGTTCAGTGGAACATCAAAtTTGGTTATTGAAATTGCTTTGTTTTTAACC
ACCGGAATCGTCATATCAGCATTTGgaTTACCTGTTGTTTTGGCCAGAGC
AAGTGTTATCAAATATGGTGCTATGGCTTGTGTAATGATTGGCAATCTGT
TCATCTTTGGtacaattcttttatttttcacagTGTTTGACCAAGAAGAT
GATTTTGGATTTTAATGACATGTGTTACATCTTAATTATTCATCGTGTGA
TATATTTGGCAAAGTTTGATCCATTTTGTCCACACAGCAAAGAGCTTCAG
CTCAATACTAAAAAATCTCCTGTTATTTTGCATAAaagcttttttcaaaa
ctttcaatgatttttctatgctatactttcaattttggcttaaaatttgg
tcctataattgaaatttcaatattgTAGAAAAGCTGTTCTTTAATGCAAA
GCCAAGATGGAAAACCTCAATTTACTCTAATCTTTGGTCCTCATTTCATC
GTCTAAGTACAAAGGCTCAATTATTTTGGTTATTGCCATTTAAAACGATT
TTTATCTTTCTCAATCTATTTTTCTACTGAGCATTTTAGTTATCTGAA
Run BLAST on NCBI

protein sequence of TCONS_00061447-protein

>TCONS_00061447-protein ID=TCONS_00061447-protein|Name=TCONS_00061447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MGTLSRIIGMSFLAAIGILLVVLGCVLDEFKTEKGPWWIMFNLFFYILAP
IPTLICKRLGNDFSSFSGTSNLVIEIALFLTTGIVISAFGLPVVLARASV
IKYGAMACVMIGNLFIFGTILLFFTVFDQEDDFGF
Run BLAST on NCBI

transcript from alignment at scaffold_358:452098..454874-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061447 ID=TCONS_00061447|Name=TCONS_00061447|organism=Clytia hemisphaerica|type=transcript|length=2777bp|location=Sequence derived from alignment at scaffold_358:452098..454874- (Clytia hemisphaerica)
TTAATGAAGTAATTCACTCTGCAGTATATCGAGCACTTTAATTGTGAAGA
GACAATTTAAAAGAATGAGGCAACATTATACTTAATTGGAATTATGAAAA
AATTGTTCTTTTAGTCAAATAAAAAGGAAAAATAAAAAAAGGAACAGATC
ATTTACAATGGGGACTCTATCAAGGTAAGAAGAAGTATTGATTGGAAGCC
TTTTTATTTAGAAGTTTCAGTTATTTATGGTCAAATAAATTTAGCCAGAT
TTTATCAAAACATGCCTGAACATGCCTTTTATTCATAATGTTTCAAAGTG
ACACAATACCGTGAACATTTTTTGGATAGATTGAATCTTTGTTGCGTCTT
AATCCTTCAAAAATTGTGATATGAGAATTTGTTCAATCTAAAACAATGAA
AATATATTCATTCATTCATTCTAAAGTGATTCTCTATCTTAGAATTATTG
GTATGTCCTTTTTGGCTGCCATTGGTATTCTGCTGGTCGTCCTCGGATGT
GTTTTAGATGAATTCAAAACAGAAAAAGGGTAAAACATTATCAACCTTGA
GATCCTTTTTTATTGTTTTTTTTTTTGCTAGAAGCACTTGTCTTCCTGTC
TCAAAGGCATAAATTTAACTTTTTGAAATACATAATTAATAGTTCTTTAT
AGAACTATTTTACTTCTAATTGATTTTAACTTTTAGCAGTTGCTTCATTT
TTCTGTCTTACATTTAGTCCTATAGGTTCATTTTTCAACAGTTTCTTTAT
TAACTCTATAAATCCTAAATTTTTTTCAGACCATGGTGGATAATGTTTAA
CTGTAAGATAGCTTTTTTAATTTGAAATTTTATGCTCCAAGAGTTTCTTC
TTAAGAAAATATTGAGAACTGTCCCTGTTAATCCACTTCCTGAACAAACT
TAGAGACAGTTTTTTTAAATGATTTTTACTACTCTATTAATAACATAAAA
TTTGATAGTTTTATGAATAATTGTGTGTTCTCAATCAGAAAGGGTTCATT
ATCATAGAAAATAAGTGAAAACGAACCCCTTTATTCAGTCAAGAAAACAT
ATTTATATTTTCATCTCACTATTCAATTCTTGGCTTGTTTTAGTATTTTT
CTACATACTTGCACCAATCCCTACATTGATTTGCAAAAGACTTGGGAATG
ATTTTTCCTCGTTCAGTGGAACATCAAAGTAAGAAAAAACACTTTGTATA
TATATCATCACATGATAACGAATGCAATTCGAGAGAAAAAATCACGAGTT
TCTCTTCTCTTTATGTTTTTCTTTTATTTATAGTTATTACACGGTACCGA
GTACAATTATATGGAATATATTTTTTGAGTTCAGATTTTTCGTCATATTT
ATTTATGATAATGTTGTTTATCTTCAACATGCAAAAAGATGAGTAATCTG
ATTGACTAAAAATGCGTACATAAATGAAATGCTGTATTTCATATTGTACT
GTGCAAATGCGAGACCACCTTCAAAAATAGGGGTCATTTTATGACTAGAA
ATGTTTTCTTTTCGCTTACAATACACAACACAACAATTTATTTATAATTT
TTAGTTTGGTTATTGAAATTGCTTTGTTTTTAACCACCGGAATCGTCATA
TCAGCATTTGGTAAGTTTTCGAATCTAACTAATGATGATTTCTAATACGC
AAATTATTTGTATTTTCATAATTGCGTATGCTATAAGTTTTTTACCAAAA
TCTTTGTCTCAGAATTCAACAGATCTTCTTGGGAGAAACTGTCAAAAATT
TGATCATTAATTTTATTATTCAAATAATTTTTTTGTTTTTTCAGGATTAC
CTGTTGTTTTGGCCAGAGCAAGTGTTGTAAGTTATGATCTGCAAATATGG
TTAATTTTTTTTTCTCTATTTGAAACGATACTGGGTTGTGGTTCATAGTG
TTTTGACCCTTAAAAGTAAGAAGCCGTACACATGAGTTTTAAGTTTGGAA
AATTCCTGACCTTCCTTTTGAATTATCTTAAAAATTACTTTTGATAATAG
ATACTTTTAAAGACTATGCAGTTACCTAACTTATAAACTTTCTAAATGTA
GCTCTTTCCCTCCTGCACAAAAACCATTATAACCATATGCTTTACGACAT
AACATATTATTTAAAAACGACAAAATCGTTTATTGAAAAATGTAGATTTT
GCTTTCAGGGGCACTCACATATTAAAGTTTTCCACGCCTTTTATAGTGTC
AACCACCAAGAATTGATGAAATTCTTTGCTTCTTCTATTTAATCGTTATT
TTTTATTAATCCTTTTCTTAAAATACAATTTTGTAGATCAAATATGGTGC
TATGGCTTGTGTAATGATTGGCAATCTGTTCATCTTTGGTACAATTCTTT
TATTTTTCACAGTGTTTGACCAAGAAGATGATTTTGGATTTTAATGACAT
GTGTTACATCTTAATTATTCATCGTGTGATATATTTGGCAAAGTTTGATC
CATTTTGTCCACACAGCAAAGAGCTTCAGCTCAATACTAAAAAATCTCCT
GTTATTTTGCATAAAAGCTTTTTTCAAAACTTTCAATGATTTTTCTATGC
TATACTTTCAATTTTGGCTTAAAATTTGGTCCTATAATTGAAATTTCAAT
ATTGTAGAAAAGCTGTTCTTTAATGCAAAGCCAAGATGGAAAACCTCAAT
TTACTCTAATCTTTGGTCCTCATTTCATCGTCTAAGTACAAAGGCTCAAT
TATTTTGGTTATTGCCATTTAAAACGATTTTTATCTTTCTCAATCTATTT
TTCTACTGAGCATTTTAGTTATCTGAA

Coding sequence (CDS) from alignment at scaffold_358:452098..454874-

>TCONS_00061447 ID=TCONS_00061447|Name=TCONS_00061447|organism=Clytia hemisphaerica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_358:452098..454874- (Clytia hemisphaerica)
ATCAAATATGGTGCTATGGCTTGTGTAATGATTGGCAATCTGTTCATCTT
TGGTACAATTCTTTTATTTTTCACAGTGTTTGACCAAGAAGATGATTTTG
GATTTTAAGATTACCTGTTGTTTTGGCCAGAGCAAGTGTTTTTGGTTATT
GAAATTGCTTTGTTTTTAACCACCGGAATCGTCATATCAGCATTTGTATT
TTTCTACATACTTGCACCAATCCCTACATTGATTTGCAAAAGACTTGGGA
ATGATTTTTCCTCGTTCAGTGGAACATCAAAACCATGGTGGATAATGTTT
AACTAATTATTGGTATGTCCTTTTTGGCTGCCATTGGTATTCTGCTGGTC
GTCCTCGGATGTGTTTTAGATGAATTCAAAACAGAAAAAGGATGGGGACT
CTATCAAGATCAAATATGGTGCTATGGCTTGTGTAATGATTGGCAATCTG
TTCATCTTTGGTACAATTCTTTTATTTTTCACAGTGTTTGACCAAGAAGA
TGATTTTGGATTTTAAGATTACCTGTTGTTTTGGCCAGAGCAAGTGTTTT
TGGTTATTGAAATTGCTTTGTTTTTAACCACCGGAATCGTCATATCAGCA
TTTGTATTTTTCTACATACTTGCACCAATCCCTACATTGATTTGCAAAAG
ACTTGGGAATGATTTTTCCTCGTTCAGTGGAACATCAAAACCATGGTGGA
TAATGTTTAACTAATTATTGGTATGTCCTTTTTGGCTGCCATTGGTATTC
TGCTGGTCGTCCTCGGATGTGTTTTAGATGAATTCAAAACAGAAAAAGGA
TGGGGACTCTATCAAGATCAAATATGGTGCTATGGCTTGTGTAATGATTG
GCAATCTGTTCATCTTTGGTACAATTCTTTTATTTTTCACAGTGTTTGAC
CAAGAAGATGATTTTGGATTTTAAGATTACCTGTTGTTTTGGCCAGAGCA
AGTGTTTTTGGTTATTGAAATTGCTTTGTTTTTAACCACCGGAATCGTCA
TATCAGCATTTGTATTTTTCTACATACTTGCACCAATCCCTACATTGATT
TGCAAAAGACTTGGGAATGATTTTTCCTCGTTCAGTGGAACATCAAAACC
ATGGTGGATAATGTTTAACTAATTATTGGTATGTCCTTTTTGGCTGCCAT
TGGTATTCTGCTGGTCGTCCTCGGATGTGTTTTAGATGAATTCAAAACAG
AAAAAGGATGGGGACTCTATCAAGATCAAATATGGTGCTATGGCTTGTGT
AATGATTGGCAATCTGTTCATCTTTGGTACAATTCTTTTATTTTTCACAG
TGTTTGACCAAGAAGATGATTTTGGATTTTAAGATTACCTGTTGTTTTGG
CCAGAGCAAGTGTTTTTGGTTATTGAAATTGCTTTGTTTTTAACCACCGG
AATCGTCATATCAGCATTTGTATTTTTCTACATACTTGCACCAATCCCTA
CATTGATTTGCAAAAGACTTGGGAATGATTTTTCCTCGTTCAGTGGAACA
TCAAAACCATGGTGGATAATGTTTAACTAATTATTGGTATGTCCTTTTTG
GCTGCCATTGGTATTCTGCTGGTCGTCCTCGGATGTGTTTTAGATGAATT
CAAAACAGAAAAAGGATGGGGACTCTATCAAGATCAAATATGGTGCTATG
GCTTGTGTAATGATTGGCAATCTGTTCATCTTTGGTACAATTCTTTTATT
TTTCACAGTGTTTGACCAAGAAGATGATTTTGGATTTTAAGATTACCTGT
TGTTTTGGCCAGAGCAAGTGTTTTTGGTTATTGAAATTGCTTTGTTTTTA
ACCACCGGAATCGTCATATCAGCATTTGTATTTTTCTACATACTTGCACC
AATCCCTACATTGATTTGCAAAAGACTTGGGAATGATTTTTCCTCGTTCA
GTGGAACATCAAAACCATGGTGGATAATGTTTAACTAATTATTGGTATGT
CCTTTTTGGCTGCCATTGGTATTCTGCTGGTCGTCCTCGGATGTGTTTTA
GATGAATTCAAAACAGAAAAAGGATGGGGACTCTATCAAGATCAAATATG
GTGCTATGGCTTGTGTAATGATTGGCAATCTGTTCATCTTTGGTACAATT
CTTTTATTTTTCACAGTGTTTGACCAAGAAGATGATTTTGGATTTTAAGA
TTACCTGTTGTTTTGGCCAGAGCAAGTGTTTTTGGTTATTGAAATTGCTT
TGTTTTTAACCACCGGAATCGTCATATCAGCATTTGTATTTTTCTACATA
CTTGCACCAATCCCTACATTGATTTGCAAAAGACTTGGGAATGATTTTTC
CTCGTTCAGTGGAACATCAAAACCATGGTGGATAATGTTTAACTAATTAT
TGGTATGTCCTTTTTGGCTGCCATTGGTATTCTGCTGGTCGTCCTCGGAT
GTGTTTTAGATGAATTCAAAACAGAAAAAGGATGGGGACTCTATCAAGAT
CAAATATGGTGCTATGGCTTGTGTAATGATTGGCAATCTGTTCATCTTTG
GTACAATTCTTTTATTTTTCACAGTGTTTGACCAAGAAGATGATTTTGGA
TTTTAAGATTACCTGTTGTTTTGGCCAGAGCAAGTGTTTTTGGTTATTGA
AATTGCTTTGTTTTTAACCACCGGAATCGTCATATCAGCATTTGTATTTT
TCTACATACTTGCACCAATCCCTACATTGATTTGCAAAAGACTTGGGAAT
GATTTTTCCTCGTTCAGTGGAACATCAAAACCATGGTGGATAATGTTTAA
CTAATTATTGGTATGTCCTTTTTGGCTGCCATTGGTATTCTGCTGGTCGT
CCTCGGATGTGTTTTAGATGAATTCAAAACAGAAAAAGGATGGGGACTCT
ATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038546XLOC_038546Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061447-proteinTCONS_00061447-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061447-exon-scaffold_358-1575043694:454701..454874TCONS_00061447-exon-scaffold_358-1575043694:454701..454874Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1575043694:454346..454432TCONS_00061447-exon-scaffold_358-1575043694:454346..454432Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1575043694:454073..454095TCONS_00061447-exon-scaffold_358-1575043694:454073..454095Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1575043694:453697..453781TCONS_00061447-exon-scaffold_358-1575043694:453697..453781Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1575043694:453265..453320TCONS_00061447-exon-scaffold_358-1575043694:453265..453320Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1575043694:453049..453080TCONS_00061447-exon-scaffold_358-1575043694:453049..453080Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1575043694:452098..452588TCONS_00061447-exon-scaffold_358-1575043694:452098..452588Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:454701..454874TCONS_00061447-exon-scaffold_358-1510915933:454701..454874Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:454346..454432TCONS_00061447-exon-scaffold_358-1510915933:454346..454432Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:454073..454095TCONS_00061447-exon-scaffold_358-1510915933:454073..454095Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:453697..453781TCONS_00061447-exon-scaffold_358-1510915933:453697..453781Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:453265..453320TCONS_00061447-exon-scaffold_358-1510915933:453265..453320Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:453049..453080TCONS_00061447-exon-scaffold_358-1510915933:453049..453080Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1510915933:452098..452588TCONS_00061447-exon-scaffold_358-1510915933:452098..452588Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:454701..454874TCONS_00061447-exon-scaffold_358-1491911889:454701..454874Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:454346..454432TCONS_00061447-exon-scaffold_358-1491911889:454346..454432Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:454073..454095TCONS_00061447-exon-scaffold_358-1491911889:454073..454095Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:453697..453781TCONS_00061447-exon-scaffold_358-1491911889:453697..453781Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:453265..453320TCONS_00061447-exon-scaffold_358-1491911889:453265..453320Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:453049..453080TCONS_00061447-exon-scaffold_358-1491911889:453049..453080Clytia hemisphaericaexon
TCONS_00061447-exon-scaffold_358-1491911889:452098..452588TCONS_00061447-exon-scaffold_358-1491911889:452098..452588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:452098..454874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.99281	5.1449	5.59414	5.40986	21.3913	14.7656	25.3432	23.2638	21.6318	21.9054	17.2701	18.6145	15.3921	13.0887	14.8538	14.9781	17.9836	21.4247	12.6526	18.9046	16.1431	16.2332	18.5986	20.7107	20.704	20.519	19.9874	13.8081	21.138	19.544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007262VPS55
Blast
[Close]
BLAST of TCONS_00061447 vs. Swiss-Prot (Human)
Match: LERL1 (Leptin receptor overlapping transcript-like 1 OS=Homo sapiens GN=LEPROTL1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 6.667e-18
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 2 
Query:  266 WWIMFNLFFYILAPIPTLICKRLGNDFSSFSGTSNLVIEIALFLTTGIVISAFGLPVVLARASVIKYGAMACVMXXXXXXXXXXXXXXXXXDQEDDFGF 562
            +W +F LFFYIL+PIP  I +RL +D  +    SN   E+A+FLTTGIV+SAFGLP+V ARA +I++GA A V+ GN  IF TIL FF VF   DDF +
Sbjct:   33 YWPLFVLFFYILSPIPYCIARRLVDDTDA---MSNACKELAIFLTTGIVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATILGFFLVFGSNDDFSW 128
The following BLAST results are available for this feature:
BLAST of TCONS_00061447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LERL16.667e-1855.56Leptin receptor overlapping transcript-like 1 OS=H... [more]
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