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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061445 ID=TCONS_00061445|Name=TCONS_00061445|organism=Clytia hemisphaerica|type=transcript|length=471bp
GGCGAAAAATTAGAGAGACGATCAGCAAGACATTTCCAGAGATTCCCAAA
GAAACATTAACATCCTTGATACCAAACAAAGAAGAAATGAGTGTCATGAA
GATTTTGACGTATAGTGAGCGCAATGTCACTTGTTATTGTCTGAAAAAGA
ATCCTATCTTTTTTGAAGTAGAGGGGTGCATTCTACCGACAGTTTACACT
TTATGGCAGCATCCGAACTTAATCTTGTCATTCAGAACATTTCCAAATGT
ACTCAATAATTTACAAGGAGGTGCAGATTTGATGTTTCCTGGTATTATTC
CACCTGCAACTGGATTTGGTGATTTCCACAAAGATCAAATTGCCGCCGTA
ACACTGCTTGGGAACGGCAGTAGCAGTGGGAATCACAACCTGCAGTAAAC
GTGATATTGAAACCGGTGGTCCACAAGGAAAGAAATTGACCATATACCAT
TGTGTCAAAGATCATCTGTGG Run BLAST on NCBI transcript from alignment at scaffold_358:446398..450053- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061445 ID=TCONS_00061445|Name=TCONS_00061445|organism=Clytia hemisphaerica|type=transcript|length=3656bp|location=Sequence derived from alignment at scaffold_358:446398..450053- (Clytia hemisphaerica)
GGCGAAAAATTAGAGAGACGATCAGCAAGACATTTCCAGAGATTCCCAAA
GAAACATTAACATCCTTGATACCAAACAAAGAAGAAATGAGTGTCATGAA
GATTTTGACGTATAGTGAGCGCAATGTCACTTGTTATTGTCTGAAAAAGA
ATCCTATCTTTTTTGAAGTAGAGGGGTGCATTCTACCGACAGGTTAGTCC
CCTGGTTTGGATTGTGTATTGAAAGGACTTTTTTAACACCTTTAACAGTC
TTTCCTCTGTTTCTTCTTCGTTTTTAGAACAATTTTGTAACAATTTCTTA
GAAATTCCTTAAAAGTGAATAAAATACTTTGAGTTTACACTTAAAGGCAC
AAGGCTTACAGTTTTTCAAACGTGTTCCGTAAGTTGATTTTTCTACTTGA
CAATCGAATGTCTTCAGTACCGTGGTGCCCCCCCCCCCAGCGACCGATTT
TCTTTTTTTTTTGGAGGGGGTAGAGGCGCCAAAATAAAAAGGGCGCAAAA
AACGCCTCTGATTACTAATTTCGGCGCCCGTTTGCTCTTATACACCTTAG
ATAAGGCAGTTTTCGGCCGAAAAGAGAAATATCCCCCAATTTTCGTGCTC
GCATTGCTCGCGTTATTTCTAAAAAGAGATTTACTTTTCATAGGGCGGGG
TTTTGCCAAAATAAAAAAATTTTCTAAAATTGCCTCCCCAGTTTGTCCGA
ACTTTAGTCGACCCACCACAGTACTGAATGTCTTCATTCTAAAAATTACA
TTTAATTATACATTATACAGACCATTGATTTAAAACGCGTTGATGTAAGG
AAGAATTGAGTTAGGAATGTATATGAATGGTCTAAATTTCTAATGGGAAA
AAGAAAAATTTAGCTTATTGCTTTTACAAGTTTCAGTTCACGTGTTTTGG
CTTGCGATCATTTTTACCGAGTTTGTCATAAAAAAAGTTTTCTCTATGTT
TTAGTTTACACTTTATGGCAGCATCCGAACTTAATCTTGTCATTCAGAAC
ATTTCCAAATGTACTCAATAATTTACAAGGAGGTGCAGGTAGGTGGATGA
TATATATTTTCAAACACGAATTCTTTAATGCGCCAAAATAAGTAGGTAGA
ATTTAACGGTATTGAAATTAACACGACAAATTATTAAATATCATTTAACG
TTTCTCCTACCATTTGTTCACGCAGCATTTTTAAACAAAAGAAAGAAATT
TCTCCCCCTCTCAAGCCGCGCGAGCGAGCTGAAATTTTGAGAAAGTCTCT
TGTTAATTCTACTTAAAAGACAGGCGCGCCTGAATAGAATAGCTGGGTGT
AAACTTTTAGCGTGAGTGGTAATTAATGAATTCCGCTTACAATGATTTTC
CGTGGAGGTAATAAAAATATAGATGGAGGTACCACTCCTACTATTCTAGT
GTATTGTATCGTTGATAGCAAACTGTTGCTTTGTTGCTTTGGGGAAAAGC
CATTAATTTTGCTTTCGCTCATGGGAATACTTGAGTCGAAGAGAATTTGA
ATAAAACCACGCTACATTTTTAATTTGTTCATTGTGTGATGACAGTTTTG
TTGATAAAAGATAAGAAAACCATGCAATAATAAGCACAGAACATCGAATT
TGAAATATTCGCTGCTCAGGGAATCCTCGACAAATTTTGTCAATTTTTAC
ATATTTACTAATGCCAATCTTTCAACTATATTCTATCAAAATTTTGAGGC
AGCTGCTATTTTAGATCTAAAGATATTTATAGCAAAGAACCTTCCGCAAA
CAACAAAGAATTCGCAATATTTGAAGAAGTTTACCTCTCGAAAGTTTCCC
GATAAAATAAAAACTTCTTTTAAAACTATAAAGAAATTATTACTCGAAAA
AAATTCGCATTTTACCTAAAAATACGAGGTTTCTTTGGACAGAATAACTT
TACTTTAGTTCTTATAATCTATATCGTGACTGATTTTTGCTATCAAGGTG
ATCAAAGGAGGCCGATTTGAAAGAAATTTCTAAAGAGTTTTATGACTTCT
ACAGAAAAGTTATTACTCCATCTAACTTTTATTACCTCTATGGATTTTCT
AATATTACTGATTTTACTGCTTTTCTTCGCCTTACGGGACTATTTTTCAA
GTTAAAATCACGGGCTTCTGAAAAATCTACCACTGCAAGTGGTTTTTCTC
AGCTAAGGTTGCACATTTCCAATTCGAAATTTGCTTGCATTGCTTTGACG
TTTTTCTCAAAGAAGGCTAAAACAAAAAGCCGACAAAACGATTCCACGAA
CACTGATTTGAGTCTATGGTAGTTAAAAGGATTTTTTGTCCGTCTGAATG
AGCCGTCTACCATACTAGACTAGTAAACCAGGTAACATTTCTCTTTTTTT
TCTCGACAGATTTGATGTTTCCTGGTATTATTCCACCTGCAACTGGATTT
GGTGATTTCCACAAAGATCAAATTGCCGCCGTAACACTGCTTGGGAACGG
GTAAATTAAACTTGATTCAATTCTTTATTTACTATCTTTGTACCAAAACA
TTTCTTAGCAGTTTACAGTAGCTTTATTCAGGAAATGCACCACTGCATCA
TTTTTGCCTTTTCATCCTTTTATGTCCCTTATTACTTCTGAAAAGATGGG
GAATGCGTGGAACTTGCCTTCCCCGCAATGACTGGCTCCCTAGCTTCCTA
GCTAAATTCTTACTGTCCGTCTATTCAAATAATATTAAAATAGGCTAGAA
GAATAGTCAAATTTGACCGACATTTTTATTCTTATTCTGTGGATGATTTG
CATGTGTTTTTTTTCGTTTGTTCGGCTTCTCAATATTAGAATCTGCCCAA
ACTGTTTGACCTAACTCGGAGGTCCTTTAAATTAACCCGGATGTCCGTTC
CATCGTTCTTCTGTTCGTCCGTCTGTTACCAGCTTTTCTCGGGATTGGCT
CATTAGTTCTTTCTGATTTTTTTGCACAATGATGTAAAGCGACAAAGCTC
AAAATGTGATTTTTAAAGAAATCTTTTTTGGGCAAATTTGGTCCAAAAAC
CACCCAAAAATAGGGTTTTTCGAACAAAATTTGTTACGTAGAATTTCCTG
ATTTTTTCCAGAAAGATACATAATAATGTGTGCTAAAAAATGGCCGAAAC
AACTTTTTCCGGAAAATTCTTATTCGCCGTAAAAAATTTTACGTGATTTT
TTTTATGTCAAAATCTTGAGCTTCTAAAAAATCTAAAAGTTTTTCTTCGA
TAAGATTGCACATTTCTAATTCGAAATTGCTTGCGGACAACAGTATTGTT
TTTCCTATCACCTTTTAACCATTCAGCGAAGAGTGATGTGCTTTTTATTT
AATTTTTCCTTCTCATTATTGTATTTTGCTTCTGTGCTGGACATTATTAT
CTTTCTTTTCTGGTTTTATTTTTATGTGACTCTCATCATCAAGTAGGTCC
ATTTTAGCATGTGGTTTGTACATATCATAGAAAATCATGTAACAGACTAT
ACAAATCTCCATCTCACCTAATTCGAACAAATCCCTCTTAAGATTTCAAG
TTAAAGAAACTCGACTTTGAATTCCATAACTGTCCATCTTTTTTCAGAGC
AGCAGTAGCAGTGGGAATCACAACCTGCAGTAAACGTGATATTGAAACCG
GTGGTCCACAAGGAAAGAAATTGACCATATACCATTGTGTCAAAGATCAT
CTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061445-exon-scaffold_358-1575043694:449862..450053 | TCONS_00061445-exon-scaffold_358-1575043694:449862..450053 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1575043694:449016..449099 | TCONS_00061445-exon-scaffold_358-1575043694:449016..449099 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1575043694:447604..447694 | TCONS_00061445-exon-scaffold_358-1575043694:447604..447694 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1575043694:446398..446501 | TCONS_00061445-exon-scaffold_358-1575043694:446398..446501 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1510915933:449862..450053 | TCONS_00061445-exon-scaffold_358-1510915933:449862..450053 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1510915933:449016..449099 | TCONS_00061445-exon-scaffold_358-1510915933:449016..449099 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1510915933:447604..447694 | TCONS_00061445-exon-scaffold_358-1510915933:447604..447694 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1510915933:446398..446501 | TCONS_00061445-exon-scaffold_358-1510915933:446398..446501 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1491911889:449862..450053 | TCONS_00061445-exon-scaffold_358-1491911889:449862..450053 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1491911889:449016..449099 | TCONS_00061445-exon-scaffold_358-1491911889:449016..449099 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1491911889:447604..447694 | TCONS_00061445-exon-scaffold_358-1491911889:447604..447694 | Clytia hemisphaerica | exon |
| TCONS_00061445-exon-scaffold_358-1491911889:446398..446501 | TCONS_00061445-exon-scaffold_358-1491911889:446398..446501 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:446398..450053 - |
Blast
BLAST of TCONS_00061445 vs. Swiss-Prot (Human)
Match: EIF2D (Eukaryotic translation initiation factor 2D OS=Homo sapiens GN=EIF2D PE=1 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 6.774e-30 Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 3
Query: 3 RKIRETISKTFPEIPKETLTSLIPNKEEMSVMKILTYSERNVTCYCLKKNPIFFEVEGCILPTVYTLWQHPNLILSFRTFPNVLNNLQGGADLMFPGIIPPATGFGDFHKDQIAAVTLLGN 365
RK+R ++ FP + + ++ L+P KEE++++K+ + VT Y NPI FE+E + PTVYTLW +P+L+ +F T+P VL L GGADLM PG++ P G K + A++L+GN
Sbjct: 20 RKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGN 140 HSP 2 Score: 33.8834 bits (76), Expect = 6.774e-30 Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = 1
Query: 370 VAVGITTCSKRDIETGGPQGKKLTIYHCVKDHLW 471
VA+G+ S ++ T G +G+ ++ H +DHLW
Sbjct: 144 VAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLW 177
The following BLAST results are available for this feature:
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