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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061443 ID=TCONS_00061443|Name=TCONS_00061443|organism=Clytia hemisphaerica|type=transcript|length=1106bpRun BLAST on NCBI protein sequence of TCONS_00061443-protein >TCONS_00061443-protein ID=TCONS_00061443-protein|Name=TCONS_00061443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp KDEPNETEILSPETINEGDKTEAACEEEDEPRLSPQEEMDQLLNNCFCQARun BLAST on NCBI transcript from alignment at scaffold_358:425962..442486- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061443 ID=TCONS_00061443|Name=TCONS_00061443|organism=Clytia hemisphaerica|type=transcript|length=16525bp|location=Sequence derived from alignment at scaffold_358:425962..442486- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:425962..442486- >TCONS_00061443 ID=TCONS_00061443|Name=TCONS_00061443|organism=Clytia hemisphaerica|type=CDS|length=11979bp|location=Sequence derived from alignment at scaffold_358:425962..442486- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061443 vs. Swiss-Prot (Human)
Match: EIF2D (Eukaryotic translation initiation factor 2D OS=Homo sapiens GN=EIF2D PE=1 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 2.208e-60 Identity = 126/332 (37.95%), Postives = 200/332 (60.24%), Query Frame = 2
Query: 107 QEEMDQLLNNCFCQAV-INSKKAELPMLVTKFASQYLHPACPEGQRIDVKKSSYKKMSKFLSEMVSRGIIEMKEFQKGVESITKINQENETLREFKQSDFAKLAKEMKELHLQEKKDEETKNKQGVEIRELFSVSGKTIPFFKEIGISKGCVLASPDIRKLLMEYVKKKELIDPNNKKFVRLDPLLTDVLFKKGEHQE--KLTWDKLMSHMVENMNPCCEIAIPGEKPIIRKGKMECIEVTTEKRMGNKKVTLVKNLDQYGIDLKDFAQELQQMAASSTALHEIPVGKNDRFAVQVQGVQTKHVKT-LLDRRNIPKKYIKGLDNI--DGKKK 1084
QE+MD+LL CF A+ KKA+LP+L + F ++ CPEG+++D+KKSSYKK+SKFL +M II++KE KGVESI ++ ++ + F + + ++ +QE E+ + +I+ L+ V F+E G KG L ++R +++ Y KK +L+D +NK VRLDP+L D + +K E KL WD L++ +E + P ++ +PG++PI++KG++ I++T +R NKKVT+V+NL+ YG+D A LQQ +ST ++ P G D VQ+QG Q H+ LL+ +P+K+I+GL+ GKKK
Sbjct: 261 QEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEPSPTSQT-----IQEGSREQPYHPP--DIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAP-GAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK 584 The following BLAST results are available for this feature:
BLAST of TCONS_00061443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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