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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061438 ID=TCONS_00061438|Name=TCONS_00061438|organism=Clytia hemisphaerica|type=transcript|length=1643bp
CACATCGTCTCCATATCACAAAGCAAAGGTTTTCTAAACTTATCAAAAAC
TGATGGCTGTTGGTACTCAAGCTGGTGGTAGTATGATATATACTTTTAGA
GGAAAGTGGATTGCTGGTTTTATTTTGGTTTGTGTTTGTGTTTTGCTATG
GGTTCGTCATACTGCTTTACAAAAATCACCTGCTGATGTTGTTGATTTTC
AAGATCCGAAAACAACACCATCTGCTTTTTATGCTAAGATACCTGGTTTC
ACAAATCAACTTGTTTCTTTTGACCGGATTAGTTCAACgtgttatcaaaa
caaaagaccAGAAAGCATAGAGGACTTATCCAAATTTGTTGCCCTGTTAC
ATCAAAATAGGCAACATAAATTATGTGGTGAGCAGTATAAGCTTTTCAAA
GTGATTTATGCAATAAGGACGAAACAAACAACAGTTGTTTTGTCTGAAAC
CTTTTtaccaaaagttcaaaaatggatGAACGGAAATCAAGAGCTTGTTG
AAGCAACCAAGAAACAAACTATCATCTTTGTCGACAATAAATGGTCATTA
GAAAGTGTTGTTTTCAATCCAGTCCGTGCCAAAAGACCTGGTGGACAAGG
ACAAGGTAGTGTTGCAGAATATGTAAACAATCTTATTGATAAAGCTAAAG
AAGGATGTGATTTTTGTTCATACAAAAAGTATACAGCTGCAGATGATTTT
GGCATGTTAGAATCTGAGAGAACGGTTGCAATATCTAATACGTTCAAGAT
TGAGAAATACCATGGAATGATTGTCTTTAAACAGCACGATCCAGTACATT
TTGACCAAGATCAGTTTATAGATGCTATGGATCTAGCAATGAGATGGTTC
AAGACTGCGGCTGGTAGAGCAACTGATCATAAATATAGGCATATGTATTG
GGATTGTTTACCGAAAGCAAGTGCTAGTCAAGTTCACCCTCACATTCATT
TAGCACTTGGGGACCATGCATATTATGCAAAATGGAATAGGTTACATAAA
GCTGCACTCAAGTTCTCTGAGAGTGTACAAAATTGGAACTACTGGAATGC
AATGCTTCAAGTTCATAATGCCCTTGGTTTAAGTGCACACTTCAATTCTG
CATCCATCATCTCGTACATCACACCACAAAAAGATTTAGAAGTTGtcatt
ttggccaaaaaaccATCCCAAgattttttcagattattttatTTTGCAGT
CCGTACATTTATGGAGGACATGGGTCAATTTGCAATCAGCGCTGGCTGTG
TCTTCCCAAAACTTGATGCTAGCACAGACAATGGTGCTGAGCTACCAGCA
ATTTGTCGTTTATTATCCAGAGGAGCTGCTGACTTACCAAGAAGTGATGT
CAGCTCTTTTGATTTATTTGGTACAGCTAATGTTAATAAGGATCCATTTG
TTGTTATTAAGAAAGTCAAGACCGCTTTGGAAAGGTTAAAGACTTCTAAG
TTCACATATCAACCCAAGGATATGGAATAGGTGttttttttatgtaattt
ttgtATCAGTTTATTGTAGGTATtagttttgtatatttttggtgGAATAA
TTACATGATTAAGATCAGTTCATTCataattgttttttatcttttacatA
GTTTATTCATAATGTTATAGTAACTTGGTTTAATGTTGGCTAC Run BLAST on NCBI transcript from alignment at scaffold_358:400472..406116- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061438 ID=TCONS_00061438|Name=TCONS_00061438|organism=Clytia hemisphaerica|type=transcript|length=5645bp|location=Sequence derived from alignment at scaffold_358:400472..406116- (Clytia hemisphaerica)
CACATCGTCTCCATATCACAAAGCAAAGGTTTTGTAAGTTTTATGTCTGA
CTTTTATAAAGTCAGCTCATACAGTTTGGGAAAAATGTGTTTTGTCGTTT
GTATTTGTTTTGATTTTATTATAATATTAGGGAGGTTGAGGCTCGCGCCT
GCGGCAGTAACAAAAGCAGGACTTTTGAAAAAATTCTTCAAGCTTACATA
AATCCAGGAAAGAAAAGTTTTCTAGCATAAATTCTTTTTCCAACTTCAAG
AGAATTTATTCAGCTTTCTTTTGCAAAAGAAATTATCAAGATATGTCTTT
TCGTTCTTTCAAAATTTGAAAATGAGTACTCGCGGGTGCGCTTTTTCAAA
CGTCTTGTTCAGGGCACAGGAAATTTAGAACATTAGACCAACTTATGGTA
TCGGCCTGAATTTTTTTACATTTTCCCCCATAATAGTTTAGCTTTCGAAA
CGTACCACGGCTGACATGAGTGTTCTACTTTTTTCAGGAAGTTAAAATAA
GCACTTAAACTGCAAATATTTCCTTCAAATTTACAATATTTTTCAACCAA
CGTTATTATTTTAACATGATAAATGTTTTTTCTTTCCAAATCTGAAAAAA
TCTTTAATCAAATAGATTCGGGTGGAAAGCGCTAAGGGAAAGTTAATGGT
ATGGTGACCCCCGTCTGTAGCTTGAGCTACGGGAAAACCCACTTGCCCCA
AACTTCTCTCAAGGATTTTTTTTGTGAAACACTTTTGATTTCAGTGCCGT
GAAGAGGTTACAAGATGGTGGGAGGTTTTTGCACAGAAATCTTCAAAAAA
TGGAACTTCAAAATGGAATATCTGGAAAACTACTAAAGGTTTTAAAGATG
AGTGACCCCTGATTTTTTTTCTGAGGATAAGGGCTNATATATTTGCAAAT
GAGTTTGAAATTTCGACTGACCACCCTCTAATAATATCCAGCAGAGGCTA
GGCGGTCAGGCTTGATCACAAGTGTTACGGTGTAAGCCGAATCGCGTATT
ACGAACAACCTCTAAATTGCCGAGTATAGGAGAAAAAAAATCGAAATTCA
AAATGGCGGCCAAACATGGGATAACTGGATAACTATCAAAAATCTTAGTT
TTTCAATCAGCTATTGCAGCTCAATAAATCAATGAAATAATTTGAAATGA
AAAGTAAACAAACCTTGAACCTTTCATGAATCCAAATAAATAAAAGTATT
CATCTAAAGTGAAGATTACATTTCAAAATAAAACGATTTCCAAACNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCTGCCAAC
TAAAAACTTCTCTGCGGGGTCACTGGCAAGGAGTTACGACTTCAGACTTT
AGATTCCAATTCTTGTATAGGCTGCAACTACACTGCCAAAATGATCTGTA
TTACAAAGACTTCCTAATGGGTCCATAAGTTAAGAAAATGAGATTATCAT
CTAGCACGGGGGGTTTTGTTTTTAAAAACAAACTTCAAAATAAAATTGTT
AATGAACTTGTTACTTAAAATATAACTTACTTACATAATTCATTTATGAT
ATAACACCCCTTTCTTAAATAAATGGCCTCTTAAAGTCTTTTATGTTTGC
CGCAAAAAGGAAGAAAAATTTAATTTGACCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTCTCTCT
TTTTCTAGCCATTTCCCGCGTGTTAGTGTAGACACAACTTTAATCCGGGG
AAATGAAGCGTTTTCATTGGTCTAAAATCACGGATGGTCACGTGACCAGA
ATTCTTATCCAGGGAAATGCCGTGGCCGCAATGTTTTGCTTTAGTGAGAT
TGACCATTTTGTTGTTTAGATTTGAGCGGGCAAAATTTCTGTACAAATCA
AAGTAGGGCTTCGTTGGAATACCGGTTGAAACACTTGTGTGATAGGATCG
ATAGGCGACCCTACCAATTCTCCAGACAATTCAAGGCAAATGTCCGGGGA
ATGAAAAAGAATATTTTTATCCCCAGCCCAGACAAACAAACTGCGCAGCC
AGATAAGTGAACCTGTGATTGTGAGTTTTAACGCACAAACGATTGTGGTT
TACAAATTTACATGAATGAAAGCGGGTAAAATAGGGATGGTGAAATTGAT
GCCAATGCAATCACCTGATTGTTTAAGTACGTCGCGCGGACCGCCCGTTC
AGTCTGGGGTAAGGGGTCACTCACAAAGCAATTTTGCTTTGGGTTAGAAA
AACGTCAATTGACGTTTTAAAAGCTGAGCCACCCACCCACATCCTAAAAC
GTCAAACACCTGAAATCCCCAAATATCGATGAAAAACTGCCTTCATCAGC
CATCTTGATTTTCACTAACGGCTTGCATAGTTTATATTTGAAAAAAAGAA
ACAGAGATCATTTCTAAAAACTTGTTCAATCACAAAATTCCCATAATTAA
TTATCTCTGTAGTATATAGTGACAGAAAGAATGGCCATCTGCAAAAATTC
AAGGGTCATTTGGGCCGTCAAACAAAGAAAAGACATAAACATTGGGCTGT
TTGTTTTGGTTTTCAAAACAGACGAAGCGATCAAACAGAAACATGGCGAG
AAGTAATATTTGGCATGGAATGAAAAATCAATGTTTCTGGATTTGAAAAA
AAACGTCAACAACCTTTAACCCATCCACCCACTAATGTCAATTGACGTTT
TTCTAACCTAAAATCGATTTGTGAACGACCCCTAAGTCTAAAAAAGTAAT
GTTAAAATTCCCGGACACGCAACAAGAAAATCCCCGGAGTCCGAGGAATC
CGCTGGGTCATATCGATAGCATAGAGTCCCCTGCCCAGTTAGTGACTGAA
ATTTTTTTATTCTAATTTTTCACTTACTTTTTACTTTTTTGAAAATCCTT
TTCAACCAACGCTTAGACAACTTTTAACATGCTCTTTGTGTTTGTTTTGA
TTTTTTATTTGACAGGCTTGCTCTAAAATATATTAGAGAAAGAAATTAAA
GAAATTAGAGAAGAAAGTTATGGAGGAACAGAGTTAAAGTAACAAAGAAA
TTAGAGAAGAAAGTTACAGAGGAATAGACAGGCTAGCTCTAAAGCTCTAA
AACAGCATCTAGTAACATGAAAACCAGAATATGATTTTTCAATGGGGATC
AAAACTTTAAAGTGCACTCACAAATATCAATTTGTCAGATCTAACAAAAT
TAGTAACGATACTGTCATCATTTGACGATCAAACAAAGGATATTCTATCT
CTGTCAAGAACTTTACAAACATTCCGACAACTTTCATCAAAATATTCTAT
TGCAGCTAAGTTCTACCATTTTGCGCAGTTTGAGGATTAAGCTGAGTTGA
AAAAAGAACTCCCTCATGGGAAAGTTTTTTTCAATCTGTCAATCATTTTC
TTAAGTAAAAAGAACGCAAAATGATTCTAACTTTAGGAAAATGCCGCCAA
TCACAGTATTCAACTATAATAATTTTCCTTTTATTTTCATTTTTGAACTT
TTGATTATCTTTTTGCTGTCTGTTAAAAGCATTATACAAAATTATCTTAC
AGCTAAACTTATCAAAAACTGATGGCTGTTGGTACTCAAGCTGGTGGTAG
TATGATATATACTTTTAGAGGAAAGTGGATTGCTGGTTTTATTTTGGTTT
GTGTTTGTGTTTTGCTATGGGTTCGTCATACTGCTTTACAAAAATCACCT
GCTGATGTTGTTGATTTTCAAGATCCGAAAACAACACCATCTGCTTTTTA
TGCTAAGATACCTGGTTTCACAAATCAACTTGTTTCTTTTGACCGGATTA
GTTCAACGTGTTATCAAAACAAAAGACCAGAAAGCATAGAGGACTTATCC
AAATTTGTTGCCCTGTTACATCAAAATAGGCAACATAAATTATGTGGTGA
GCAGTATAAGCTTTTCAAAGTGATTTATGCAATAAGGACGAAACAAACAA
CAGTTGTTTTGTCTGAAACCTTTTTACCAAAAGTTCAAAAATGGATGAAC
GGAAATCAAGAGCTTGTTGAAGCAACCAAGAAACAAACTATCATCTTTGT
CGACAATAAATGGTCATTAGAAAGTGTTGTTTTCAATCCAGTCCGTGCCA
AAAGACCTGGTGGACAAGGACAAGGTAGTGTTGCAGAATATGTAAACAAT
CTTATTGATAAAGCTAAAGAAGGATGTGATTTTTGTTCATACAAAAAGTA
TACAGCTGCAGATGATTTTGGCATGTTAGAATCTGAGAGAACGGTTGCAA
TATCTAATACGTTCAAGATTGAGAAATACCATGGAATGATTGTCTTTAAA
CAGCACGATCCAGTACATTTTGACCAAGATCAGTTTATAGATGCTATGGA
TCTAGCAATGAGATGGTTCAAGACTGCGGCTGGTAGAGCAACTGATCATA
AATATAGGCATATGTATTGGGATTGTTTACCGAAAGCAAGTGCTAGTCAA
GTTCACCCTCACATTCATTTAGCACTTGGGGACCATGCATATTATGCAAA
ATGGAATAGGTTACATAAAGCTGCACTCAAGTTCTCTGAGAGTGTACAAA
ATTGGAACTACTGGAATGCAATGCTTCAAGTTCATAATGCCCTTGGTTTA
AGTGCACAGTAAGCTTATTAATAATTTGTTTTGATATTAAACAGACGTGT
TTAGAATAACTGCCATCAAGTTGCAGCAGTGTATTGGTCATTTGCTCATT
AAAAGGGTCTATAGTCATGAAAGTAAGCTTCAGGGCTTCTTGTAACTCAA
CCGAATATAAACTTTTTTCGTTGATATTTTTTATTGTCTTTATGTAAACA
AGACATGTAACTTCAAAGTTTGAAGTTTTTACAATAATTCTTTTTTTAGA
AGTTATATACTCCTTTTTAAATTGAGAGAATATTGCCTACTAAACCAAAA
TTACCCAGCCCCAAAAATGCAAGATGCTATTAGTATTTTGCCTTTATGTT
TGAAGCTCATTATATAATTCCTTCTAATTTCATTACTTTAGCTTCAATTC
TGCATCCATCATCTCGTACATCACACCACAAAAAGATTTAGAAGTTGTCA
TTTTGGCCAAAAAACCATCCCAAGATTTTTTCAGATTATTTTATTTTGCA
GTCCGTACATTTATGGAGGACATGGGTCAATTTGCAATCAGCGCTGGCTG
TGTCTTCCCAAAACTTGATGCTAGCACAGACAATGGTGCTGAGCTACCAG
CAATTTGTCGTTTATTATCCAGAGGAGCTGCTGACTTACCAAGAAGTGAT
GTCAGCTCTTTTGATTTATTTGGTACAGCTAATGTTAATAAGGATCCATT
TGTTGTTATTAAGAAAGTCAAGACCGCTTTGGAAAGGTTAAAGACTTCTA
AGTTCACATATCAACCCAAGGATATGGAATAGGTGTTTTTTTTATGTAAT
TTTTGTATCAGTTTATTGTAGGTATTAGTTTTGTATATTTTTGGTGGAAT
AATTACATGATTAAGATCAGTTCATTCATAATTGTTTTTTATCTTTTACA
TAGTTTATTCATAATGTTATAGTAACTTGGTTTAATGTTGGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061438-exon-scaffold_358-1575043694:406084..406116 | TCONS_00061438-exon-scaffold_358-1575043694:406084..406116 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1575043694:401409..402464 | TCONS_00061438-exon-scaffold_358-1575043694:401409..402464 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1575043694:400472..401025 | TCONS_00061438-exon-scaffold_358-1575043694:400472..401025 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1510915933:406084..406116 | TCONS_00061438-exon-scaffold_358-1510915933:406084..406116 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1510915933:401409..402464 | TCONS_00061438-exon-scaffold_358-1510915933:401409..402464 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1510915933:400472..401025 | TCONS_00061438-exon-scaffold_358-1510915933:400472..401025 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1491911889:406084..406116 | TCONS_00061438-exon-scaffold_358-1491911889:406084..406116 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1491911889:401409..402464 | TCONS_00061438-exon-scaffold_358-1491911889:401409..402464 | Clytia hemisphaerica | exon |
| TCONS_00061438-exon-scaffold_358-1491911889:400472..401025 | TCONS_00061438-exon-scaffold_358-1491911889:400472..401025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:400472..406116 - |
Blast
The following BLAST results are available for this feature:
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