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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061430 ID=TCONS_00061430|Name=TCONS_00061430|organism=Clytia hemisphaerica|type=transcript|length=2550bp TCatatagcccaaaaacaagagaaaattcATTCACAAATAAATCAGACAC CGCAATGGCAAGTTGGGGGACGAAAACAGACGAAAAATCATCGGAACAAA AAGTTGGTGCAGTTTACCAGGAAAACATAGCTTTGAGAAAGAAGATTGCT GGCGAATCAACCGATATCGAGGATGGCTCTGTACACCAGAAGAAATCAAA ATGGTATACTCAATGCAAATGGCAATGGTTGTTATGGTTACTCACTGTTG GTACAGCTCTCATttacattttttatcaaaagattcAATACCCATCTTCG AATGTGTTCTCCTTAAAATCTGATCCACTCACTTTAgggaaaattgaaaa tcgaGAGATCGAGATTTGTAATTCTAACCAGATGAAAAGATCGTTCCCGG ATTTAGATTATGCTCTTTATGGATACAACATCTTGTTTGGATATCCATTG GCAATTGGACATGATCCTGGATTGACACATCCTGTTTTCCAGGCTGATTA CGGTGGCTCAAGGGTGACAGCTGATTGTCGATATCAAGTACCTGAAGGCT ACGATTTAGTTCCTGATGTTTCTTGTGTTACTTCATTCTCAAGTCAAACC GTCAAAAATTCTCGACAATTTTCGAAAGAACTCTCTGTTTCAGCTGAAGT TAGCGGTGGAGGATGGGGAGTCAGCTTCTCAGCTAGCGCCGATTATAAGA AGAAAGAATCGTCAATGTCAGCCAGTGAATCGGTTTATGTTTTTTCAACC GCGTCCTGTAATTATTATTTCTCTCTGTTAAACGAGAATAATCCTCCAAA ATTGACTAAAGACTTTGTAAACCTTGCTAAACAGTTGAAAACTGAAAGCG AtgtcttcaaatttttcaattactACGGAACACATTTTATGACGTATACT TTATTTGGCGCCCGATTCGTTTACGAGAATAAAATGTCTCAAAAATCgtt caaatcagaaagcgaagaagGCGTCAGTGTATCAGTCAAAGCTAGTTATT CAGGATTATTCAGTCTTGGTGGTGGTTTTGGTATGAGCAGCTCACAAAGA CAAGCTGCCGAGGATTTCCAATCTAAAGTCGAAACCAAAACTATCTCGAT TGGAGCGCCACCACCAGCCGACGGAAACACAATGACCTGGGCGTCCACCG TCAAAGATACTCCAGTCCCTGTTCGATACAAGCTGGAAAGCATTGAAAAT CTCTTTTCTTCATTATACATGAGGGGAGAGAATTTTGATTACGATTCGAC AAAGAAACTGGTCCAATCGAGCAAACTCAAGTATTGTAAAGAGCTGAATG AAAAAGGAATTGTGGATAGCTGTAAAATGGTAACCAATGTCATTAGTTTA ATAGGCCTATCAGTCTGGGGAGGTACATTGAATCAACTCAACAGAGATCG ATGTGAAGATAAGTGTCTTGAAGATGACCGATGTATTGTACTCGAATATC CTGCTGCAAATCAGTGTTGGTTGTTTTATCATGATAAACAATCGAATGTT ACGCTCTTAGGTAAAGCTTCTATGCCCGTTCCAAAAGGTGAAGAATATGG TACTTTCATATTTTATGATGCTTTAAAACTCCTTGGACATACTTTAAAAA TTGAACGAATCGCTATTAAACCAGGTCAATTAGCTCGAAAAAATATACGT ACTAATGAAACAGATTGCTCTATGGAGTGTCGGCAAGACCAGGCGTGTGC TATGGTGACTTTCAACAGACAAGCACAACCAGAAGAAAATAACTGCAAGC TATATAGCGAGGATAAGTTCGAATGTCCAGATGATATCAAGGAGTGTCAT ATTATTGCATATGATATTAAATATGCAAATTACGTAACGATTTTCAATCC CTGACGAATTTGTATTTCAACAAAGTATTACAAGTAGAgagatattttat attttatattttttctcgcTACTTCTAATTCTTTGACTTCAAACACCCTC TTCTCATAAACCCAGTAGGATATTTTCagacagtgggggtaaaaatgaaG GACCGAAACttaatggggattgatattcccatgtttttttatatggCTCG GCATATAAATTCTATTgatttcaagtcagaaaattcagcggggatggaaa aaatagcaaataatttcgcagtgaggatttgtttatttgactATTTTCAG TAGGGACAAAAATGAGTGTAATTTTCCAATAGGGACGATTTTTGGGACCA TTTTCCAATGGGAGGGGTACCACCGACGGATCTATGAGAAGGTAGATAGA TAGATTTAAGATATTATTGACAATTATTAAAATCCAATCCAATAAATTTA AGTTGTAGTGACTTCAAAATAACGAGGCAAGTTCATGActaacacaattt ttttttaaagataaatgtTAAGACATAATTCTAGTTCTTCTTAGTGGTAA GAGTGCTCGATAATATCTCAGAGCTGTCGTAAGTTATTAAGAATGATGCA TTTTTAGAGAGCAGAGACACTCTTAAGCGTCGAAAAAAAAGAATTCGAGA ACAGCTTCAAACTTGAATTTCCTGAATTTCAATCAAATTAGGGATCAAAG Run BLAST on NCBI protein sequence of TCONS_00061430-protein >TCONS_00061430-protein ID=TCONS_00061430-protein|Name=TCONS_00061430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp
SYSPKTRENSFTNKSDTAMASWGTKTDEKSSEQKVGAVYQENIALRKKIA GESTDIEDGSVHQKKSKWYTQCKWQWLLWLLTVGTALIYIFYQKIQYPSS NVFSLKSDPLTLGKIENREIEICNSNQMKRSFPDLDYALYGYNILFGYPL AIGHDPGLTHPVFQADYGGSRVTADCRYQVPEGYDLVPDVSCVTSFSSQT VKNSRQFSKELSVSAEVSGGGWGVSFSASADYKKKESSMSASESVYVFST ASCNYYFSLLNENNPPKLTKDFVNLAKQLKTESDVFKFFNYYGTHFMTYT LFGARFVYENKMSQKSFKSESEEGVSVSVKASYSGLFSLGGGFGMSSSQR QAAEDFQSKVETKTISIGAPPPADGNTMTWASTVKDTPVPVRYKLESIEN LFSSLYMRGENFDYDSTKKLVQSSKLKYCKELNEKGIVDSCKMVTNVISL IGLSVWGGTLNQLNRDRCEDKCLEDDRCIVLEYPAANQCWLFYHDKQSNV TLLGKASMPVPKGEEYGTFIFYDALKLLGHTLKIERIAIKPGQLARKNIR TNETDCSMECRQDQACAMVTFNRQAQPEENNCKLYSEDKFECPDDIKECH IIAYDIKYANYVTIFNP Run BLAST on NCBI transcript from alignment at scaffold_358:336673..339745- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061430 ID=TCONS_00061430|Name=TCONS_00061430|organism=Clytia hemisphaerica|type=transcript|length=3073bp|location=Sequence derived from alignment at scaffold_358:336673..339745- (Clytia hemisphaerica) TCATATAGCCCAAAAACAAGAGAAAATTCATTCACAAATAAATCAGACAC
CGCAATGGCAAGTTGGGGGACGAAAACAGACGAAAAATCATCGGAACAAA
AAGTTGGTGCAGTTTACCAGGAAAACATAGCTTTGAGAAAGAAGATTGCT
GGCGAATCAACCGATATCGAGGATGGCTCTGTACACCAGAAGAAATCAAA
ATGGTATACTCAATGCAAATGGCAATGGTTGTTATGGTTACTCACTGTTG
GTACAGCTCTCATTTACATTTTTTATCAAAAGATTCAATACCCATCTTCG
AATGTGTTCTCCTTAAAATCTGATCCACTCACTTTAGGGAAAATTGAAAA
TCGAGAGATCGAGATTTGTAATTCTAACCAGATGAAAAGATCGTTCCCGG
ATTTAGATTATGCTCTTTATGGATACAACATCTTGTTTGGATATCCATTG
GCAATTGGACATGATCCTGGATTGACACATCCTGTTTTCCAGGCTGATTA
CGGTGGCTCAAGGGTGACAGCTGATTGTCGATATCAAGTACCTGAAGGCT
ACGATTTAGTTCCTGATGTTTCTTGTGTTACTTCATTCTCAAGTCAAACC
GTCAAAAATTCTCGACAATTTTCGAAAGAACTCTCTGTTTCAGCTGAAGT
TAGCGGTGGAGGATGGGGAGTCAGCTTCTCAGCTAGCGCCGATTATAAGA
AGAAAGAATCGTCAATGTCAGCCAGTGAATCGGTTTATGTTTTTTCAACC
GCGTCCTGTAATTATTATTTCTCTCTGTTAAACGAGAATAATCCTCCAAA
ATTGACTAAAGACTTTGTAAACCTTGCTAAACAGTTGAAAACTGAAAGCG
ATGTCTTCAAATTTTTCAATTACTACGGAACACATTTTATGACGTATACT
TTATTTGGCGCCCGATTCGTTTACGAGAATAAAATGTCTCAAAAATCGTT
CAAATCAGAAAGCGAAGAAGGCGTCAGTGTATCAGTCAAAGCTAGTTATT
CAGGATTATTCAGTCTTGGTGGTGGTTTTGGTATGAGCAGCTCACAAAGA
CAAGCTGCCGAGGATTTCCAATCTAAAGTCGAAACCAAAACTATCTCGAT
TGGAGCGCCACCACCAGCCGACGGAAACACAATGACCTGGGCGTCCACCG
TCAAAGATACTCCAGTCCCTGTTCGATACAAGCTGGAAAGCATTGAAAAT
CTCTTTTCTTCATTATACATGAGGGGAGAGAATTTTGATTACGATTCGAC
AAAGAAACTGGTCCAATCGAGCAAACTCAAGTATTGTAAAGAGCTGAATG
AAAAAGGTATTATTCAAATACTGAATTATAGATATTAGGGATGGGGGAGC
TCAATTTTAAAACGACTGCGTATGCGCGGTAGACTTCTGTTCATCCACCA
GCGAAAAGGGACTCTTATAAAGGTAGTACATCTATTAGATCAGCCTATAG
GTCTCCCGTTCAGACTATATGCGCGGCTATAATTTAGAAGCACGTGTAGC
GTACCTTGAAAATCGCATGCCGAAATCATATTCCAACCTGTGACTACTAA
TCGCGATTCTATTCAGCGCACCAACGGAGAGAAAAGTAACCACGACGACA
ATTCAAGATCTTGGATTAAGATCAAAGTTGATATTTTTTTTCTCGCAGTC
TTAGAAACACAATGATGCGGAATGAAAAAGTACGTACTTACCAGGGGGTA
TAGCCATTCGCGTACAGGGGGGAGGTACTCGATTTTCGACATTTTAGTGC
GTACGTACTATGTGGACGGCCTCTACTGGTACAAATAGGCTGTTATGAAA
TAGTATTCTTTCTTCAATTTTCATTCCAGGAATTGTGGATAGCTGTAAAA
TGGTAACCAATGTCATTAGTTTAATAGGCCTATCAGTCTGGGGAGGTACA
TTGAATCAACTCAACAGAGATCGATGTGAAGATAAGTGTCTTGAAGATGA
CCGATGTATTGTACTCGAATATCCTGCTGCAAATCAGTGTTGGTTGTTTT
ATCATGATAAACAATCGAATGTTACGCTCTTAGGTAAAGCTTCTATGCCC
GTTCCAAAAGGTGAAGAATATGGTACTTTCATATTTTATGATGCTTTAAA
ACTCCTTGGACATACTTTAAAAATTGAACGAATCGCTATTAAACCAGGTC
AATTAGCTCGAAAAAATATACGTACTAATGAAACAGATTGCTCTATGGAG
TGTCGGCAAGACCAGGCGTGTGCTATGGTGACTTTCAACAGACAAGCACA
ACCAGAAGAAAATAACTGCAAGCTATATAGCGAGGATAAGTTCGAATGTC
CAGATGATATCAAGGAGTGTCATATTATTGCATATGATATTAAATATGCA
AATTACGTAACGATTTTCAATCCCTGACGAATTTGTATTTCAACAAAGTA
TTACAAGTAGAGAGATATTTTATATTTTATATTTTTTCTCGCTACTTCTA
ATTCTTTGACTTCAAACACCCTCTTCTCATAAACCCAGTAGGATATTTTC
AGACAGTGGGGGTAAAAATGAAGGACCGAAACTTAATGGGGATTGATATT
CCCATGTTTTTTTATATGGCTCGGCATATAAATTCTATTGATTTCAAGTC
AGAAAATTCAGCGGGGATGGAAAAAATAGCAAATAATTTCGCAGTGAGGA
TTTGTTTATTTGACTATTTTCAGTAGGGACAAAAATGAGTGTAATTTTCC
AATAGGGACGATTTTTGGGACCATTTTCCAATGGGAGGGGTACCACCGAC
GGATCTATGAGAAGGTAGATAGATAGATTTAAGATATTATTGACAATTAT
TAAAATCCAATCCAATAAATTTAAGTTGTAGTGACTTCAAAATAACGAGG
CAAGTTCATGACTAACACAATTTTTTTTTAAAGATAAATGTTAAGACATA
ATTCTAGTTCTTCTTAGTGGTAAGAGTGCTCGATAATATCTCAGAGCTGT
CGTAAGTTATTAAGAATGATGCATTTTTAGAGAGCAGAGACACTCTTAAG
CGTCGAAAAAAAAGAATTCGAGAACAGCTTCAAACTTGAATTTCCTGAAT
TTCAATCAAATTAGGGATCAAAG Coding sequence (CDS) from alignment at scaffold_358:336673..339745- >TCONS_00061430 ID=TCONS_00061430|Name=TCONS_00061430|organism=Clytia hemisphaerica|type=CDS|length=3708bp|location=Sequence derived from alignment at scaffold_358:336673..339745- (Clytia hemisphaerica) GAATTGTGGATAGCTGTAAAATGGTAACCAATGTCATTAGTTTAATAGGC CTATCAGTCTGGGGAGGTACATTGAATCAACTCAACAGAGATCGATGTGA AGATAAGTGTCTTGAAGATGACCGATGTATTGTACTCGAATATCCTGCTG CAAATCAGTGTTGGTTGTTTTATCATGATAAACAATCGAATGTTACGCTC TTAGGTAAAGCTTCTATGCCCGTTCCAAAAGGTGAAGAATATGGTACTTT CATATTTTATGATGCTTTAAAACTCCTTGGACATACTTTAAAAATTGAAC GAATCGCTATTAAACCAGGTCAATTAGCTCGAAAAAATATACGTACTAAT GAAACAGATTGCTCTATGGAGTGTCGGCAAGACCAGGCGTGTGCTATGGT GACTTTCAACAGACAAGCACAACCAGAAGAAAATAACTGCAAGCTATATA GCGAGGATAAGTTCGAATGTCCAGATGATATCAAGGAGTGTCATATTATT GCATATGATATTAAATATGCAAATTACGTAACGATTTTCAATCCCTGATC ATATAGCCCAAAAACAAGAGAAAATTCATTCACAAATAAATCAGACACCG CAATGGCAAGTTGGGGGACGAAAACAGACGAAAAATCATCGGAACAAAAA GTTGGTGCAGTTTACCAGGAAAACATAGCTTTGAGAAAGAAGATTGCTGG CGAATCAACCGATATCGAGGATGGCTCTGTACACCAGAAGAAATCAAAAT GGTATACTCAATGCAAATGGCAATGGTTGTTATGGTTACTCACTGTTGGT ACAGCTCTCATTTACATTTTTTATCAAAAGATTCAATACCCATCTTCGAA TGTGTTCTCCTTAAAATCTGATCCACTCACTTTAGGGAAAATTGAAAATC GAGAGATCGAGATTTGTAATTCTAACCAGATGAAAAGATCGTTCCCGGAT TTAGATTATGCTCTTTATGGATACAACATCTTGTTTGGATATCCATTGGC AATTGGACATGATCCTGGATTGACACATCCTGTTTTCCAGGCTGATTACG GTGGCTCAAGGGTGACAGCTGATTGTCGATATCAAGTACCTGAAGGCTAC GATTTAGTTCCTGATGTTTCTTGTGTTACTTCATTCTCAAGTCAAACCGT CAAAAATTCTCGACAATTTTCGAAAGAACTCTCTGTTTCAGCTGAAGTTA GCGGTGGAGGATGGGGAGTCAGCTTCTCAGCTAGCGCCGATTATAAGAAG AAAGAATCGTCAATGTCAGCCAGTGAATCGGTTTATGTTTTTTCAACCGC GTCCTGTAATTATTATTTCTCTCTGTTAAACGAGAATAATCCTCCAAAAT TGACTAAAGACTTTGTAAACCTTGCTAAACAGTTGAAAACTGAAAGCGAT GTCTTCAAATTTTTCAATTACTACGGAACACATTTTATGACGTATACTTT ATTTGGCGCCCGATTCGTTTACGAGAATAAAATGTCTCAAAAATCGTTCA AATCAGAAAGCGAAGAAGGCGTCAGTGTATCAGTCAAAGCTAGTTATTCA GGATTATTCAGTCTTGGTGGTGGTTTTGGTATGAGCAGCTCACAAAGACA AGCTGCCGAGGATTTCCAATCTAAAGTCGAAACCAAAACTATCTCGATTG GAGCGCCACCACCAGCCGACGGAAACACAATGACCTGGGCGTCCACCGTC AAAGATACTCCAGTCCCTGTTCGATACAAGCTGGAAAGCATTGAAAATCT CTTTTCTTCATTATACATGAGGGGAGAGAATTTTGATTACGATTCGACAA AGAAACTGGTCCAATCGAGCAAACTCAAGTATTGTAAAGAGCTGAATGAA AAAGGAATTGTGGATAGCTGTAAAATGGTAACCAATGTCATTAGTTTAAT AGGCCTATCAGTCTGGGGAGGTACATTGAATCAACTCAACAGAGATCGAT GTGAAGATAAGTGTCTTGAAGATGACCGATGTATTGTACTCGAATATCCT GCTGCAAATCAGTGTTGGTTGTTTTATCATGATAAACAATCGAATGTTAC GCTCTTAGGTAAAGCTTCTATGCCCGTTCCAAAAGGTGAAGAATATGGTA CTTTCATATTTTATGATGCTTTAAAACTCCTTGGACATACTTTAAAAATT GAACGAATCGCTATTAAACCAGGTCAATTAGCTCGAAAAAATATACGTAC TAATGAAACAGATTGCTCTATGGAGTGTCGGCAAGACCAGGCGTGTGCTA TGGTGACTTTCAACAGACAAGCACAACCAGAAGAAAATAACTGCAAGCTA TATAGCGAGGATAAGTTCGAATGTCCAGATGATATCAAGGAGTGTCATAT TATTGCATATGATATTAAATATGCAAATTACGTAACGATTTTCAATCCCT GATCATATAGCCCAAAAACAAGAGAAAATTCATTCACAAATAAATCAGAC ACCGCAATGGCAAGTTGGGGGACGAAAACAGACGAAAAATCATCGGAACA AAAAGTTGGTGCAGTTTACCAGGAAAACATAGCTTTGAGAAAGAAGATTG CTGGCGAATCAACCGATATCGAGGATGGCTCTGTACACCAGAAGAAATCA AAATGGTATACTCAATGCAAATGGCAATGGTTGTTATGGTTACTCACTGT TGGTACAGCTCTCATTTACATTTTTTATCAAAAGATTCAATACCCATCTT CGAATGTGTTCTCCTTAAAATCTGATCCACTCACTTTAGGGAAAATTGAA AATCGAGAGATCGAGATTTGTAATTCTAACCAGATGAAAAGATCGTTCCC GGATTTAGATTATGCTCTTTATGGATACAACATCTTGTTTGGATATCCAT TGGCAATTGGACATGATCCTGGATTGACACATCCTGTTTTCCAGGCTGAT TACGGTGGCTCAAGGGTGACAGCTGATTGTCGATATCAAGTACCTGAAGG CTACGATTTAGTTCCTGATGTTTCTTGTGTTACTTCATTCTCAAGTCAAA CCGTCAAAAATTCTCGACAATTTTCGAAAGAACTCTCTGTTTCAGCTGAA GTTAGCGGTGGAGGATGGGGAGTCAGCTTCTCAGCTAGCGCCGATTATAA GAAGAAAGAATCGTCAATGTCAGCCAGTGAATCGGTTTATGTTTTTTCAA CCGCGTCCTGTAATTATTATTTCTCTCTGTTAAACGAGAATAATCCTCCA AAATTGACTAAAGACTTTGTAAACCTTGCTAAACAGTTGAAAACTGAAAG CGATGTCTTCAAATTTTTCAATTACTACGGAACACATTTTATGACGTATA CTTTATTTGGCGCCCGATTCGTTTACGAGAATAAAATGTCTCAAAAATCG TTCAAATCAGAAAGCGAAGAAGGCGTCAGTGTATCAGTCAAAGCTAGTTA TTCAGGATTATTCAGTCTTGGTGGTGGTTTTGGTATGAGCAGCTCACAAA GACAAGCTGCCGAGGATTTCCAATCTAAAGTCGAAACCAAAACTATCTCG ATTGGAGCGCCACCACCAGCCGACGGAAACACAATGACCTGGGCGTCCAC CGTCAAAGATACTCCAGTCCCTGTTCGATACAAGCTGGAAAGCATTGAAA ATCTCTTTTCTTCATTATACATGAGGGGAGAGAATTTTGATTACGATTCG ACAAAGAAACTGGTCCAATCGAGCAAACTCAAGTATTGTAAAGAGCTGAA TGAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061430-exon-scaffold_358-1575043694:338440..339745 | TCONS_00061430-exon-scaffold_358-1575043694:338440..339745 | Clytia hemisphaerica | exon |
TCONS_00061430-exon-scaffold_358-1575043694:336673..337916 | TCONS_00061430-exon-scaffold_358-1575043694:336673..337916 | Clytia hemisphaerica | exon |
TCONS_00061430-exon-scaffold_358-1510915933:338440..339745 | TCONS_00061430-exon-scaffold_358-1510915933:338440..339745 | Clytia hemisphaerica | exon |
TCONS_00061430-exon-scaffold_358-1510915933:336673..337916 | TCONS_00061430-exon-scaffold_358-1510915933:336673..337916 | Clytia hemisphaerica | exon |
TCONS_00061430-exon-scaffold_358-1491911889:338440..339745 | TCONS_00061430-exon-scaffold_358-1491911889:338440..339745 | Clytia hemisphaerica | exon |
TCONS_00061430-exon-scaffold_358-1491911889:336673..337916 | TCONS_00061430-exon-scaffold_358-1491911889:336673..337916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_358 | supercontig | scaffold_358:336673..339745 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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