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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061428 ID=TCONS_00061428|Name=TCONS_00061428|organism=Clytia hemisphaerica|type=transcript|length=1818bpRun BLAST on NCBI protein sequence of TCONS_00061428-protein >TCONS_00061428-protein ID=TCONS_00061428-protein|Name=TCONS_00061428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp VVSSDRLIKSKQTDNSVQSVKLGLETRNGGQTRIIHIIRKNFNSLDKRMSRun BLAST on NCBI transcript from alignment at scaffold_358:264603..291071- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061428 ID=TCONS_00061428|Name=TCONS_00061428|organism=Clytia hemisphaerica|type=transcript|length=26469bp|location=Sequence derived from alignment at scaffold_358:264603..291071- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_358:264603..291071- >TCONS_00061428 ID=TCONS_00061428|Name=TCONS_00061428|organism=Clytia hemisphaerica|type=CDS|length=13356bp|location=Sequence derived from alignment at scaffold_358:264603..291071- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061428 vs. Swiss-Prot (Human)
Match: YIPF1 (Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=1 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.241e-76 Identity = 128/287 (44.60%), Postives = 178/287 (62.02%), Query Frame = 3
Query: 234 QLQFQEFSNV-----------------PVDTEKENSGFGNSLLQNSGHDSE-----GDDNDEAELLSQEKKSPPFWTFEYYQAFFDVDTNQVVSRITYSMIP-SKQNYLLSKIRPNPDLYGPFWICATLVFTIAICGNLSSFFASEGD--HKWKSDFRLVSLSATVIFLYAWLIPTCIWGFLTWRGNRT----GFTYLECVCVYGYSLSIFVPISILWLIPFDWLRWLLVLVGAVTSGLVIVSTFWRAVEDEPKNIAVGTVAVIFILHTLLAIGFKLYFFKTIRIIH 1007
LQF+EF N P +T K G + SG + + DD+D+ ELL+ +KKS PFWTFEYYQ FFDVDT QV RI S++P +N++ IR NPDLYGPFWICATLVF IAI GNLS+F G+ + + +FR VS++AT+I+ YAWL+P +WGFL WR ++ +++LE VCVYGYSL I++P +ILW+IP +RW+LV++ SG ++ TFW AV ++ + +A+ T+ I +LH LL++G YFF + H
Sbjct: 6 DLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSP----RGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDAPEMDH 288 The following BLAST results are available for this feature:
BLAST of TCONS_00061428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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