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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061426 ID=TCONS_00061426|Name=TCONS_00061426|organism=Clytia hemisphaerica|type=transcript|length=970bp
AATCACTTCATCAAGTATGGCTTTCGTCGTTAAATTGGCTACCATTTTTC
TTTGGTTGTTGCTAAGCAACGTATGGACACAGTACATAAACGAATTTGAC
GAAGAACTTCGATTTGAATGTCCAAAGAATCAATATATCAGTGAAATCGG
CAGCAAACATCAAAATGCTGAAGAAGACAGACAATGGAAATATACTTGTC
GTTCTGGTCTAGTAAATGATCAATGTGATTGGTCAGTAGATTATGTTAAT
AATTATGACCAAATCATGGATTGGAAATGTGCTCAAAATGGACTTGTTGC
TGGTGTCCGAAGTATCCATAGCAATGAGAGGGAAGATCGAATCTGGAAAT
TTAAATGTTGCCAgaCGCCAGATTCAAATGAAGGTTGTCAAAATATAACG
ATGAATGAATTTGATGAATTTATGGATTTCATTGTACCACGTGGTCATGC
CATTATTGGTTTCCACAGTATCCATAGCAACAAAAGAGAGACCTTATCAG
TGGAGGTATCAGGTACTATTGGTTTCCTTGGTAGTGGGGTGGATGTATCT
GTTGGACTGCAAACGACTTTTGAGAACACATGGCATTGGTCATCATCAAA
AACTAAAGAAACATCTCTCAAAACGTCCAGTTCAGCCTCGCAGTCACTTG
GATataaaggtttgtttactttcaaCACCCCAgcctcactggaaaatttg
gcaaaaatttcgtccccgctgggaaaataccctgaaatttcagccccact
tggaaaGTAGAATCTCTATCCCCACTGGGATATCactaggaatttttatc
cccactgaggaaaagaagttccaccagggctgtgagacaggggtgtcttt
cAATGCAGTGTAATTGCCACCGCAGCGAGCCTGAGGGCGACCGAGGATGG
CAGTCATTGCTTCACGATAGGATATTGGACACGCATCTCGAATTTTTGCG
cgcgcatttttttgtttttt Run BLAST on NCBI transcript from alignment at scaffold_358:246488..250372- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061426 ID=TCONS_00061426|Name=TCONS_00061426|organism=Clytia hemisphaerica|type=transcript|length=3885bp|location=Sequence derived from alignment at scaffold_358:246488..250372- (Clytia hemisphaerica)
AATCACTTCATCAAGTATGGCTTTCGTCGTTAAATTGGCTACCATTTTTC
TTTGGTTGTTGCTAAGCAACGTATGGACACAGTACATAAACGAATTTGAC
GAAGAACTTCGATTTGAATGTCCAAAGAATCAATATATCAGTGAAATCGG
CAGTAAGTCAGTTTTATAAAAAACTTTGGTATTACTTTTTTCAAAGGAAT
CTAGTGTCCGTGTAAACCTAGGCTTTACGTATCACTGAAATAGTTTTTGT
TTTAAAAATATTGGAGGGATTCTGGGAGCCAATTGTACAAGCCAATAATG
GAGCCAATAATGTGGTAGCGGTTTTGTATCCCGATATTCTTCAAAATCCA
ATGAATTTATATGTTGGAAGGTTAAACACACACTTAGGAAAACCCACCAA
AGGTTATTTTTTCCAGGTGTGTATTGGGCCATTCCATTTTATATCCAAAC
AGGGGGTAATCAGAGAAGAATTTCCAGGGAGTATAAAAAAGTATTCTTTC
ATTTTTCCAGGGGCCAAAAGATTGGTTTTAGTCCGTCCATTCTTACTTTT
AAGCTTTTAAGATATGAAAATAATTTTTTCAATGGGTTCTTTTGCAAATT
TTGATACCAGGGGGTATTCACATATTTCTAAAAATCTTTCTTTGACTTGA
AAAGGTTCGTCCAGCCCCTGTATGGAAATTTTATGGAACAGTTCATTAAT
TCTTCATTATATTTGTATCTTTTTTATTGATAAAATAAATAAAATCAGGA
TTTATCTGTTTTCAGGCAAACATCAAAATGCTGAAGAAGACAGACAATGG
AAATATACTTGTCGTTCTGGTCTAGTAAATGATCAATGTGATTGGTCAGT
AGATTATGTTAATAATTATGACCAAATCATGGATTGGAAATGTGCTCAAA
ATGGACTTGTTGCTGGTGTCCGAAGTATCCATAGCAATGAGAGGGAAGAT
CGAATCTGGAAATTTAAATGTTGCCAGGTTACCCAGCTGGCACACAACGT
TGTTTCAACGTTCATCTAACGTTATATGGACGTTGTGAATGTTAGAAAAA
CGTTGAAACAATGTTGTGTTCCAGCTGGGTAATAACTCGAACCTCTATTC
TTTCTATAACTCGAATGTCTCCTTAACTCGAACAAGTTTTCTCGTCCCTT
CAGTTAACAATGCCTTATACAAATCTCCATAACTCGAAATTTCCGCAACT
CAGAACTCGAACAAATATTTGGTTCCCATATATTTACGACTGTAGTAGTA
AACGTAAAAGTTTGAATTTAGGACACGTCTTTAGATTTAGCCTTTTTCAC
AGGATTGGTGTTTCTAGTGTACAAATTTTGCACTGCAGTAATTATCTTTA
ACGTCTTTTTCGTATGGTAGTTTGTACAGAATACACTTTTCTCGAGATGC
ATAAATTTATTGTTGTCCTCGTTTTCAAACAGATTTCATTGCTATGAAAT
AATACATTTAAACCAATTTAAATTCCCAAAAGGCAAACATTAACTCTAAA
ACAAAAGTACTTGAAATTCAAAATGTCTCATGAGGTGTAAACAACACAAT
TATCATTGTGAATATTTAATTTTATAGCAATGAAATCTGTTTGAAAACGA
GGACAACAATAAATTTATGCATCTCGAGAAAAGTGTATTGAATTTAAAAT
AGCCTGTAAATGATGCGCAAATCCTATGAAATAGAGGTGCAGGTTAGTAA
TACACGGGTTGCAAAATTATTTTAATGCAGTCAAAACATGTGATTACTCG
AAAGAGTTCACGTGATTTTATTCCCCGGTTTTATTCCCATATTACTTGCT
TTACAACTTACAGCTGAAGTAAATCTCATGTAGCAAGCACATAAAAACTT
CGAGACTTTAATTTTGCAGCCTGTGTATTCCAATCTCTCTGTAACTCAAA
TGACCTACAAATGAATCCTGCATCATGATACACATGCGTAATTTGGCGTT
CTTTATTCATATTCAAAGAGGAATCAAAATATTTAAAACTTATCATATTC
TTTTTCTCTATCTTTAGTCCGGGGGGAGGGGGTACTTAGGCAAGTGAAGG
GTACGGGTATGTGCCGCCCTTAAGGGTGCCTTTTTTGGGAAAATTAAATT
TCCGTACCACTAAGAGTCGGAAAAATAGGAAAATTTTCCTATTTTTTCTC
TTTTTTAGTCCCGCTACGAGTCCGAAGGTCGAAAGTCGGGCGGCACATAC
CCGTCAGCTCACCACCCTAGTACCTCCCCCGGATCTTTAGTAGATGCAGG
ATTCTTAAGATTTACTCCCTCCTAGCAAACTAATTCTAGTATCTGTCAGT
TAATATATTGGCAGTGGAGTAAAAAGTTAGCTCTTTTCATAGTTCTGAAC
CCCTCTCCCCTTAAATCAATATGTTATAGACCGACCCATGCCCCCTGAAC
CAGCTCAGAACTCCCCAACATTGATATTTGGGGGAAGGGGGTCATTAGAA
AGAGTTTTCTGCCACTATTTTCCTGACTGATTCTAGTTCGAGAGTCAACT
GTTTATTTATTTTTTTATTTACAGACGCCAGATTCAAATGAAGGTTGTCA
AAATATAACGATGAATGAATTTGATGAATTTATGGATTTCATTGTACCAC
GTGGTCATGCCATTATTGGTTTCCACAGTATCCATAGCAACAAAAGAGAG
TAAGAAACTCTTTGATTTTATAATTTTCCATTTGGGTAAAGTCTCACGGA
TCTCATGTTTGGCCTTACCGCAGTAGGTAAAGTGTCCAAGGGAGGCTCAC
TAGGTGAAATAAGAGATTTCCAATCTTGGAGATATTTTGAAAATATGATG
TTTCAATGAATTTCAGATTTGGGAATATTATGAAATATGATGTTTCCTCA
ACTATGGAAATATAGAAAAGTCATACCTCCATATTTACAAATGTATATGG
AAATATCATATTTTCAAGATATTTCCAGGATTGGAAATCTCTTGTTTCGC
CCAAGGGGGGCTGTAAGAATAGTTACTAAAGGTTTACATTGATGGCGCAT
CAAATCAATGTTCAAATCTTGGGGATGAATGCTTTACTGCAGATTATTTT
TGAGAATTTTTCGGGTTAAATTACCTTGATGTTAAGAAACTAAAGTAAAA
GTAGCCACTGGAATGGCCAAGTGGAATCTTAAGCCAGAATGAGCAATCAC
CCCATCCTTTTGTTTACATCTAGAGATCGAAAATGGAGAGCTAATGTTTG
TAAATTTGCTAAATGCCAAGCTATAAGAATGAGAGTATTATCTACAATCA
AACCACGGCAAGAACAAATTAAAATTATCGGTATAGCAACATCTCAAGGT
TGTTCCAATAAAGCTTCATTCCAAACAAAGCTGGAGAATACGGATTCGGT
TATTGAGACTTCAGCTTTTACCACAGAGAAAGGGACTTCGTTTACTTTTG
GTAGGACCTTATCAGTGGAGGTATCAGGTACTATTGGTTTCCTTGGTAGT
GGGGTGGATGTATCTGTTGGACTGCAAACGACTTTTGAGAACACATGGCA
TTGGTCATCATCAAAAACTAAAGAAACATCTCTCAAAACGTCCAGTTCAG
CCTCGCAGTCACTTGGATATAAAGGTTTGTTTACTTTCAACACCCCAGCC
TCACTGGAAAATTTGGCAAAAATTTCGTCCCCGCTGGGAAAATACCCTGA
AATTTCAGCCCCACTTGGAAAGTAGAATCTCTATCCCCACTGGGATATCA
CTAGGAATTTTTATCCCCACTGAGGAAAAGAAGTTCCACCAGGGCTGTGA
GACAGGGGTGTCTTTCAATGCAGTGTAATTGCCACCGCAGCGAGCCTGAG
GGCGACCGAGGATGGCAGTCATTGCTTCACGATAGGATATTGGACACGCA
TCTCGAATTTTTGCGCGCGCATTTTTTTGTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061426-exon-scaffold_358-1575043694:250221..250372 | TCONS_00061426-exon-scaffold_358-1575043694:250221..250372 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1575043694:249396..249607 | TCONS_00061426-exon-scaffold_358-1575043694:249396..249607 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1575043694:247724..247848 | TCONS_00061426-exon-scaffold_358-1575043694:247724..247848 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1575043694:246488..246968 | TCONS_00061426-exon-scaffold_358-1575043694:246488..246968 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1510915933:250221..250372 | TCONS_00061426-exon-scaffold_358-1510915933:250221..250372 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1510915933:249396..249607 | TCONS_00061426-exon-scaffold_358-1510915933:249396..249607 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1510915933:247724..247848 | TCONS_00061426-exon-scaffold_358-1510915933:247724..247848 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1510915933:246488..246968 | TCONS_00061426-exon-scaffold_358-1510915933:246488..246968 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1491911889:250221..250372 | TCONS_00061426-exon-scaffold_358-1491911889:250221..250372 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1491911889:249396..249607 | TCONS_00061426-exon-scaffold_358-1491911889:249396..249607 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1491911889:247724..247848 | TCONS_00061426-exon-scaffold_358-1491911889:247724..247848 | Clytia hemisphaerica | exon |
| TCONS_00061426-exon-scaffold_358-1491911889:246488..246968 | TCONS_00061426-exon-scaffold_358-1491911889:246488..246968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:246488..250372 - |
Blast
The following BLAST results are available for this feature:
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