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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061423 ID=TCONS_00061423|Name=TCONS_00061423|organism=Clytia hemisphaerica|type=transcript|length=1818bp
aaagcataacacgcactgcacacagagctttttaatagagtgctcatttc
aataggaaaacaatggttgttctcttgggagaagtgccttctagaggtag
ttggttatctattatttttacatcgttgcttGAAGATTGCGCCAACATGA
AACACCATGTGCGTTTGACCTGGAGCAGCGTTGATCATAGGATATGTCAC
ATATTACAGATATGAAAATACAGATGTGGACGTTGAGTACGACATAACAT
GTGACAACGGTCAACATCGAAAACAACGCTCAAAAGCGTCCTTAAAACTT
GATCGATACAGCCAAACACATTTTGTTCAAAAACATGGCGCATTTTATTC
CAAGCAAAATTGTGACTATGGAAGTAATGATTGTATAAGAAGCTTAAACG
GGAAAAAAACACTGGCGCCAAATAAACTTATTTCCGATTTCGAACGCTGT
ATCGAGAAAGCAAATATGAAGCCGACAAAACCAACGACTGCGACAACGAC
TACGTCAAGACCGACAAAAATACGACATGATGTTCTTTCTGACGTCACAA
GAGATACGGTTAAACTAAAACCACGTTGGAAAGATAACAATAAAGACAAC
ATTTTCACTGGATCTGCAGTCACCGTCAATCATGTAATCTTAAACAATAT
TAAATTTATAGTTTCAATTTTACTCTCCATTAGTATAATTTTTATGTAGC
AAGTTATATTCGAAGAGCAGGCAATATACGTTCTTTTCTAACTATGTGTA
TACGGTGCTAGTGATTGTAGATACCGTTAATACGCTGGCTAGGCCTTCAA
AAATATCTACCCTTGCTATGAGCTTTTTTGAGTGCATCCATTTCGATGCA
TAGGCAAAGGAGGGCTATTATTCATCGatattatatgtgttaaataataa
ttttataagaaagggcattttagaatttatttcaaaatgcatttcGAAGT
ATAATTGAATTACGCGAGCGATATCGAGCAAAAAGCAAAACACGATACTT
CTTACGCTAACATTTCACGCAAAATTTTAtgatagaatatagttgaaaCA
TTGGCATTACTatatatttactattttttccATTCCCCAGCCATGAAAGA
TGGCATAGAATATCAATTCCCATCGGGTTTCAGTCCattaatttcatccc
cactggtagaaaaaaatcctaccgggtctgtgaaaagggggtgtaTAATT
ACTAGGAGAAAGTCAATGCAAGAAATTCATACATTTGCCAAGCGTACTTT
GTAAACTCTGACCCAATCTCCTTAGGGTTTAATGATAGTAGATGTATTAT
CAGGTTTCTCttaagcccggggggggggcactcatatttTCCGACCAACG
GCATGTGCCATCTTTAAGAGTAGGTATTTCAAGACtctcgaaatgcactg
taagggtgtacttttgatagagtgcactacaaAGGGTCTTCTTTTTAGGT
GAATACACTGTAatggtgtgtttggggactgCTGAATTGCAAGTCTGACA
GCAAGAATCTTTATAGTTTGGCtcgcacccattttgatttgttttgcact
tTGTCTCGACATCCCGGGCTCATTTTTAGATGGCGTCaccaaaataagat
atgaaatcaaactacactgtaagggtcagaaacgtttGGTAGATGCACTG
TTAAGGGTATCCTTTCACTGCTCAAGAGattcactgtaagggtccgattc
tGAAAGCCATTTCTTTGGCGGCACTTGCCGTAGTTTAAAAATCGAGTGCT
TCGTTCTTAAAATCaatcagagaaaaaaaaaatctaaatttgtgTCAGAA
TCCGAGAATCAAATATCA Run BLAST on NCBI transcript from alignment at scaffold_358:242386..244723- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061423 ID=TCONS_00061423|Name=TCONS_00061423|organism=Clytia hemisphaerica|type=transcript|length=2338bp|location=Sequence derived from alignment at scaffold_358:242386..244723- (Clytia hemisphaerica)
AAAGCATAACACGCACTGCACACAGAGCTTTTTAATAGAGTGCTCATTTC
AATAGGAAAACAATGGTTGTTCTCTTGGGAGAAGTGCCTTCTAGAGGTAG
TTGGTTATCTATTATTTTTACATCGTTGCTTGAAGATTGCGCCAACATGA
AACACCATGTGCGTTTGTAAGTTTGTTCTTTATGTCTCGAATTTTCTTGA
ATGCTTTGTGATTCTATTAATTTCACTGTATTATTTACTTTCAGGCTCAT
CTTGAAGCTTATGTGCCATTTTTTGAAAAAAGAAAACTTAAATATTAGTT
TCCCACAGCACTGAAGACGAATGAGAGTTTTTATTAAAAATTTGGAGATT
TGATGTTTCACAGAAAAGTGCTAGCAAGGGGCATTTCGGATCCCATATCT
TCCGAAGGACTTTTCCGTTTGCCTTGAAATTTGACAAGCTTCTTAACCTA
AGGTTCACCGAGCATAACTAGAAAAAAAAGCTCAATTTTTGAAATCGCAA
ATTTAACCGCTAAAAATCGCGAATTTTTCAGCCAAAAATACATTCAAACA
TAGCACGTTAGATTTTCTAAAATAAGCAAAAAGAATCTTCGCATAAATTT
TATTTGACTATCAAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTATA
TCTGGATAGACTTTAAAATCACTTCTTTACTTTCAGGACCTGGAGCAGCG
TTGATCATAGGATATGTCACATATTACAGATATGAAAATACAGATGTGGA
CGTTGAGTACGACATAACATGTGACAACGGTCAACATCGAAAACAACGCT
CAAAAGCGTCCTTAAAACTTGATCGATACAGCCAAACACATTTTGTTCAA
AAACATGGCGCATTTTATTCCAAGCAAAATTGTGACTATGGAAGTAATGA
TTGTATAAGAAGCTTAAACGGGAAAAAAACACTGGCGCCAAATAAACTTA
TTTCCGATTTCGAACGCTGTATCGAGAAAGCAAATATGAAGCCGACAAAA
CCAACGACTGCGACAACGACTACGTCAAGACCGACAAAAATACGACATGA
TGTTCTTTCTGACGTCACAAGAGATACGGTTAAACTAAAACCACGTTGGA
AAGATAACAATAAAGACAACATTTTCACTGGATCTGCAGTCACCGTCAAT
CATGTAATCTTAAACAATATTAAATTTATAGTTTCAATTTTACTCTCCAT
TAGTATAATTTTTATGTAGCAAGTTATATTCGAAGAGCAGGCAATATACG
TTCTTTTCTAACTATGTGTATACGGTGCTAGTGATTGTAGATACCGTTAA
TACGCTGGCTAGGCCTTCAAAAATATCTACCCTTGCTATGAGCTTTTTTG
AGTGCATCCATTTCGATGCATAGGCAAAGGAGGGCTATTATTCATCGATA
TTATATGTGTTAAATAATAATTTTATAAGAAAGGGCATTTTAGAATTTAT
TTCAAAATGCATTTCGAAGTATAATTGAATTACGCGAGCGATATCGAGCA
AAAAGCAAAACACGATACTTCTTACGCTAACATTTCACGCAAAATTTTAT
GATAGAATATAGTTGAAACATTGGCATTACTATATATTTACTATTTTTTC
CATTCCCCAGCCATGAAAGATGGCATAGAATATCAATTCCCATCGGGTTT
CAGTCCATTAATTTCATCCCCACTGGTAGAAAAAAATCCTACCGGGTCTG
TGAAAAGGGGGTGTATAATTACTAGGAGAAAGTCAATGCAAGAAATTCAT
ACATTTGCCAAGCGTACTTTGTAAACTCTGACCCAATCTCCTTAGGGTTT
AATGATAGTAGATGTATTATCAGGTTTCTCTTAAGCCCGGGGGGGGGGCA
CTCATATTTTCCGACCAACGGCATGTGCCATCTTTAAGAGTAGGTATTTC
AAGACTCTCGAAATGCACTGTAAGGGTGTACTTTTGATAGAGTGCACTAC
AAAGGGTCTTCTTTTTAGGTGAATACACTGTAATGGTGTGTTTGGGGACT
GCTGAATTGCAAGTCTGACAGCAAGAATCTTTATAGTTTGGCTCGCACCC
ATTTTGATTTGTTTTGCACTTTGTCTCGACATCCCGGGCTCATTTTTAGA
TGGCGTCACCAAAATAAGATATGAAATCAAACTACACTGTAAGGGTCAGA
AACGTTTGGTAGATGCACTGTTAAGGGTATCCTTTCACTGCTCAAGAGAT
TCACTGTAAGGGTCCGATTCTGAAAGCCATTTCTTTGGCGGCACTTGCCG
TAGTTTAAAAATCGAGTGCTTCGTTCTTAAAATCAATCAGAGAAAAAAAA
AATCTAAATTTGTGTCAGAATCCGAGAATCAAATATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061423-exon-scaffold_358-1575043694:244558..244723 | TCONS_00061423-exon-scaffold_358-1575043694:244558..244723 | Clytia hemisphaerica | exon |
| TCONS_00061423-exon-scaffold_358-1575043694:242386..244037 | TCONS_00061423-exon-scaffold_358-1575043694:242386..244037 | Clytia hemisphaerica | exon |
| TCONS_00061423-exon-scaffold_358-1510915933:244558..244723 | TCONS_00061423-exon-scaffold_358-1510915933:244558..244723 | Clytia hemisphaerica | exon |
| TCONS_00061423-exon-scaffold_358-1510915933:242386..244037 | TCONS_00061423-exon-scaffold_358-1510915933:242386..244037 | Clytia hemisphaerica | exon |
| TCONS_00061423-exon-scaffold_358-1491911889:244558..244723 | TCONS_00061423-exon-scaffold_358-1491911889:244558..244723 | Clytia hemisphaerica | exon |
| TCONS_00061423-exon-scaffold_358-1491911889:242386..244037 | TCONS_00061423-exon-scaffold_358-1491911889:242386..244037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:242386..244723 - |
Blast
The following BLAST results are available for this feature:
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