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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061401 ID=TCONS_00061401|Name=TCONS_00061401|organism=Clytia hemisphaerica|type=transcript|length=1458bp
CTGGCAACAGATTGGAACAATTGCAACAAAATGTCTTCTTCAAACTCTGT
ATAAACGATGTACAACACTTCTAAagaatcattatttttcaatCCTTGAA
CCAAATCATTGGAAATAACATTTTCACCAATAATCTCCAATACTCGAAGG
TTGGTAAATGACAATGATGACATTGCCGGATTTGATTTCTGCAGATCCTG
TTGTATAAATTGATCATTGCTATTATTCCGGTGAAGCTGGCTTCCAATTT
CTAGATTACTAGGAGATTTTTCAGTGAGATTCACTCGGTCGTCATGAAGA
AATCTTTCTGAAGAATTCTTTGTTACGTCCTTAGAGTTTCTGAAAAATGG
TTCGTTATTTACATTATTTCCAATTGCTATCATCTGTGGACATGATTTAG
AACTTTCAATCTTCTCTCCTACAGAATCAGATTTGCAtaataaagtttca
aaaaatctttcaccAATATCACAATAAGATAATTTCAATTTCCTCAATCC
TGTCAACTTGCATATTGCATCTTGATGTAAAACACAATCAAATTCATTCA
ATGTTAGTTCACACAAACTGAATGCCAAGTTTTGGCAAACATCTTGGAAA
TCTGATTTATCAATTACCATTTTAGCTAAAGATAGACATTGAAGGTTTTG
CCATTTCTTTAGGGCAGGTATGTAAGCCTTATTATAGATGTCTGTCAGAT
GTGGTAACGTTATATCCAACTTGTTGACTTTGGTGTTGATTCTTATCGTC
TCGGCAACAGGTTCCAAAGCAAAATTGTACAAATCCTCGTCGATGTTTCG
ACTGCTttcattttcactatttttgtgAAAAGGTTCAGAATAAAACTCTT
CCATATAATCTTGGTGTTGGTTGCTTTCAGTGTTGAATAATCTCGGACGT
TTTGCTTTACGACCAGTATAGTCTTCATCTAAACAATTATCATTTCCAAT
GAAGTCGAAACCATTATCCATGGTGCCAATATGTTTTCCAGTTTCACTTG
TTTTCAAGTCATTTGATAGCATTtgaaaatcatacaaaaattcattttca
acaTTTCCATCTTTTTGCTTCAATAAATCTTCAGGAAGTGCACCGTAAAT
GGCTTTCCAGATCATTTCGTGTTTAGCAAGAGTCAATTTCTGAAACAAGC
AGTTCGTTCTAACATcctttaaaccaaaatatctacCCACGTGAACAACA
TGTATAAGGTCATCTAAATCATCCAGACGACCAATGTCCAAATTGACACT
TAACTGTTCAATTTGCTTCAATATTGGTAAAAATAAATCCAGGTTTTGTG
AAATGACTTTAGCACATGTACCACTAATGGtcagttttgtaattttgttt
gcaaGACGATTTAAAACTAGTGATAAACTCATTCTGGTGTTGGTTTTGGA
AGGTTTTGTTCGATCTGAGTATTTCAAGTACGCTCCTTGCAAAAGATACA
TCAGCTTA Run BLAST on NCBI transcript from alignment at scaffold_358:590949..592467+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061401 ID=TCONS_00061401|Name=TCONS_00061401|organism=Clytia hemisphaerica|type=transcript|length=1519bp|location=Sequence derived from alignment at scaffold_358:590949..592467+ (Clytia hemisphaerica)
CTGGCAACAGATTGGAACAATTGCAACAAAATGTCTTCTTCAAACTCTGT
ATAAACGATGTACAACACTTCTAAagaatcattatttttcaatCCTTGAA
CCAAATCATTGGAAATAACATTTTCACCAATAATCTCCAATACTCGAAGG
TTGGTAAATGACAATGATGACATTGCCGGATTTGATTTCTGCAGATCCTG
TTGTATAAATTGATCATTGCTATTATTCCGGTGAAGCTGGCTTCCAATTT
CTAGATTACTAGGAGATTTTTCAGTGAGATTCACTCGGTCGTCATGAAGA
AATCTTTCTGAAGAATTCTTTGTTACGTCCTTAGAGTTTCTGAAAAATGG
TTCGTTATTTACATTATTTCCAATTGCTATCATCTGTGGACATGATTTAG
AACTTTCAATCTTCTCTCCTACAGAATCAGATTTGCAtaataaagtttca
aaaaatctttcaccAATATCACAATAAGATAATTTCAATTTCCTCAATCC
TGTCAACTTGCATATTGCATCTTGATGTAAAACACAATCAAATTCATTCA
ATGTTAGTTCACACAAACTGAATGCCAAGTTTTGGCAAACATCTTGGAAA
TCTGATTTATCAATTACCATTTTAGCTAAAGATAGACATTGAAGGTTTTG
CCATTTCTTTAGGGCAGGTATGTAAGCCTTATTATAGATGTCTGTCAGAT
GTGGTAACGTTATATCCAACTTGTTGACTTTGGTGTTGATTCTTATCGTC
TCGGCAACAGGTTCCAAAGCAAAATTGTACAAATCCTCGTCGATGTTTCG
ACTGCTttcattttcactatttttgtgAAAAGGTTCAGAATAAAACTCTT
CCATATAANCGACTGCTTTCATTTTCACTATTGTTGTGAAAAGGTTCAGA
ATAAAACTCTTCCATATAATCTTGGTGTTGGTTGCTTTCAGTGTTGAATA
ATCTCGGACGTTTTGCTTTACGACCAGTATAGTCTTCATCTAAACAATTA
TCATTTCCAATGAAGTCGAAACCATTATCCATGGTGCCAATATGTTTTCC
AGTTTCACTTGTTTTCAAGTCATTTGATAGCATTtgaaaatcatacaaaa
attcattttcaacaTTTCCATCTTTTTGCTTCAATAAATCTTCAGGAAGT
GCACCGTAAATGGCTTTCCAGATCATTTCGTGTTTAGCAAGAGTCAATTT
CTGAAACAAGCAGTTCGTTCTAACATcctttaaaccaaaatatctacCCA
CGTGAACAACATGTATAAGGTCATCTAAATCATCCAGACGACCAATGTCC
AAATTGACACTTAACTGTTCAATTTGCTTCAATATTGGTAAAAATAAATC
CAGGTTTTGTGAAATGACTTTAGCACATGTACCACTAATGGtcagttttg
taattttgtttgcaaGACGATTTAAAACTAGTGATAAACTCATTCTGGTG
TTGGTTTTGGAAGGTTTTGTTCGATCTGAGTATTTCAAGTACGCTCCTTG
CAAAAGATACATCAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061401-exon-scaffold_358-1491911889:590949..591780 | TCONS_00061401-exon-scaffold_358-1491911889:590949..591780 | Clytia hemisphaerica | exon |
| TCONS_00061401-exon-scaffold_358-1510915933:590949..591780 | TCONS_00061401-exon-scaffold_358-1510915933:590949..591780 | Clytia hemisphaerica | exon |
| TCONS_00061401-exon-scaffold_358-1575043694:590949..591780 | TCONS_00061401-exon-scaffold_358-1575043694:590949..591780 | Clytia hemisphaerica | exon |
| TCONS_00061401-exon-scaffold_358-1491911889:591842..592467 | TCONS_00061401-exon-scaffold_358-1491911889:591842..592467 | Clytia hemisphaerica | exon |
| TCONS_00061401-exon-scaffold_358-1510915933:591842..592467 | TCONS_00061401-exon-scaffold_358-1510915933:591842..592467 | Clytia hemisphaerica | exon |
| TCONS_00061401-exon-scaffold_358-1575043694:591842..592467 | TCONS_00061401-exon-scaffold_358-1575043694:591842..592467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:590949..592467 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032675 | L_dom-like |
Blast
The following BLAST results are available for this feature:
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