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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061400 ID=TCONS_00061400|Name=TCONS_00061400|organism=Clytia hemisphaerica|type=transcript|length=1812bp
tttgaagaaaattgataaatatTATTGGAACGATAAATGTGTCAGATGGT
GGCACCCAAACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAAAA
ACGTGGAAGCCCGCCGTACAACCAGACCCAAGTTTTATCCGTCCAAATTG
TACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTTCAAAAATGCGCC
AACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCGAGA
AGTGGAACAGAGTTGGGTGTTTTAAGAGGAAGTTCTTATTTAACTTCAGA
TGGCGATATAGACATACACGTAGACGTCCCTCAGGACATATTATTCAAAA
GATTGCGCAAGGTTTTAAAAGGGATTGCAATGGATCCGGGCGGCAGACCT
TCGGCCGAAGTAAGTTGGATACAAAGCGGATGTCCACATAATAAAATGGT
TTTTAACGATTTCATGGTTGATGAAATGATGGAGGAAGGGGGTACAAGAC
CTACCCTAAAATCTGTATGTACGTGTTATatgaattctgaaaaattatCA
TGTCATAAAGATGCTAAGAGCCGAATGTATGGTCAGTACGGACCTTCCTG
GTTTGTACCACTTCACGTCAAATACTTAGATGCTCCACACGGTGcacatg
taaacaaaaaatgtagAGAAAAACTGCAAAGCCTGTTGTCACCTGATGGA
TTTATCAACGAAAAGGCCGTCAGAGATCTGGATCCTAGTATTGTGTATGG
CGAAGATGAAATGCAGATGATTTTAGCGCAATTAAATATACTTCATTACA
CGATCAAGACAACACTAGAGCATAAACGCACAAAATATAAGAAAGGGTAT
TTCTTTTTTAACGCCAAAGAAAATTAATTAGACGTTGTACGGCTCTTTTA
CAAATTTCTAGATACAGTGGACTGTCGCAAATTCAAACTTACACTATTCg
agttttaaatatttccctcttataggggaatatttgttaaaGCGGCTTTT
TCAGGATAGATGCAAATTCAGAAGCGGTCGCGTAGTCGATCGCGCGATCT
GAAAGCGTGCTTTGATGGAGAGCTATAGAgatggactcactcacaaagat
aaaaagcagCGCTTTCTTAAATAATTCAAATACGTAAGTGAAAGGTGAAT
ATAACTAAGCGTTTGTAAACATTCGGCGTGAGAGCTTTTAATGGCTTCCA
ATTTTAGAAGGATTATGGCTTTTGATGTGAAACTCCACTTGCTGCTATCT
TtattttatcttgttttttgGTGCTTTGTTGagtatttaaaaaggtttat
ttgTTTACTACTTAGTATTTTATGTTCGTGTAGTTTTATGAATGCaccaa
tgggctcttccagaaaaaatccgttcatggggggtggaggatgtattatt
tttttcatgaattacccctggacattttgattttcaacccaCTGggcacg
ggttatacccctggacaaacatcaaatcaaccccgtggacacaaaaaatt
accccttgacattggaatttaccccctggacattggaattttttggcatt
ttttcaatacccctggaaaattcatcctccaccccccatgaacggacttt
ttctggaagagcccgaTACATTGTTAGTGCTCTGTAGTATATACAATTAA
AGTGTCGACTTTTTTCTTCAACACCGCACACACCACAACAACAGCAACAC
AACCCTTAACTACACAGGTCAGGTATGATTTTTTCTCCCTTTGTAAATAA
GTAGTCATAAGTCTTGATATTAAGATGATTTGTgccaaacagtcagtttt
accAAGCATTTT Run BLAST on NCBI transcript from alignment at scaffold_358:582850..584953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061400 ID=TCONS_00061400|Name=TCONS_00061400|organism=Clytia hemisphaerica|type=transcript|length=2104bp|location=Sequence derived from alignment at scaffold_358:582850..584953+ (Clytia hemisphaerica)
tttgaagaaaattgataaatatTATTGGAACGATAAATGTGTCAGGTATA
AAATAATgcagtctctttaactcgaatgtcttcttaaAAGTTGAATCAGT
TTTTTCCTATCTAGAGTTAACAATGTCATATAAACCTTACTCCgcaactc
aaaatttccttaactccttaactcaaaacaaatttgtgttccccgtgcat
gttatgagttatggagacttaaTTTTCTAGTCTATGCAATCTAAATTTGC
CAGGAATGCCTTCGTTTTATAGGtgttaaatttttaagtttcAAAAAGGT
GTctgaaaattatttattttcatttttaatatcATAGATGGTGGCACCCA
AACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAAAAACGTGGAA
GCCCGCCGTACAACCAGACCCAAGTTTTATCCGTCCAAATTGTACTTTTG
GACAAGAGCTGAAACCACCGACAACCTGTTCAAAAATGCGCCAACGATTA
TGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCGAGAAGTGGAAC
AGAGTTGGGTGTTTTAAGAGGAAGTTCTTATTTAACTTCAGATGGCGATA
TAGACATACACGTAGACGTCCCTCAGGACATATTATTCAAAAGATTGCGC
AAGGTTTTAAAAGGGATTGCAATGGATCCGGGCGGCAGACCTTCGGCCGA
AGTAAGTTGGATACAAAGCGGATGTCCACATAATAAAATGGTTTTTAACG
ATTTCATGGTTGATGAAATGATGGAGGAAGGGGGTACAAGACCTACCCTA
AAATCTGTATGTACGTGTTATatgaattctgaaaaattatCATGTCATAA
AGATGCTAAGAGCCGAATGTATGGTCAGTACGGACCTTCCTGGTTTGTAC
CACTTCACGTCAAATACTTAGATGCTCCACACGGTGcacatgtaaacaaa
aaatgtagAGAAAAACTGCAAAGCCTGTTGTCACCTGATGGATTTATCAA
CGAAAAGGCCGTCAGAGATCTGGATCCTAGTATTGTGTATGGCGAAGATG
AAATGCAGATGATTTTAGCGCAATTAAATATACTTCATTACACGATCAAG
ACAACACTAGAGCATAAACGCACAAAATATAAGAAAGGGTATTTCTTTTT
TAACGCCAAAGAAAATTAATTAGACGTTGTACGGCTCTTTTACAAATTTC
TAGATACAGTGGACTGTCGCAAATTCAAACTTACACTATTCgagttttaa
atatttccctcttataggggaatatttgttaaaGCGGCTTTTTCAGGATA
GATGCAAATTCAGAAGCGGTCGCGTAGTCGATCGCGCGATCTGAAAGCGT
GCTTTGATGGAGAGCTATAGAgatggactcactcacaaagataaaaagca
gCGCTTTCTTAAATAATTCAAATACGTAAGTGAAAGGTGAATATAACTAA
GCGTTTGTAAACATTCGGCGTGAGAGCTTTTAATGGCTTCCAATTTTAGA
AGGATTATGGCTTTTGATGTGAAACTCCACTTGCTGCTATCTTtatttta
tcttgttttttgGTGCTTTGTTGagtatttaaaaaggtttatttgTTTAC
TACTTAGTATTTTATGTTCGTGTAGTTTTATGAATGCaccaatgggctct
tccagaaaaaatccgttcatggggggtggaggatgtattatttttttcat
gaattacccctggacattttgattttcaacccaCTGggcacgggttatac
ccctggacaaacatcaaatcaaccccgtggacacaaaaaattaccccttg
acattggaatttaccccctggacattggaattttttggcattttttcaat
acccctggaaaattcatcctccaccccccatgaacggactttttctggaa
gagcccgaTACATTGTTAGTGCTCTGTAGTATATACAATTAAAGTGTCGA
CTTTTTTCTTCAACACCGCACACACCACAACAACAGCAACACAACCCTTA
ACTACACAGGTCAGGTATGATTTTTTCTCCCTTTGTAAATAAGTAGTCAT
AAGTCTTGATATTAAGATGATTTGTgccaaacagtcagttttaccAAGCA
TTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061400-exon-scaffold_358-1491911889:582850..582894 | TCONS_00061400-exon-scaffold_358-1491911889:582850..582894 | Clytia hemisphaerica | exon |
| TCONS_00061400-exon-scaffold_358-1510915933:582850..582894 | TCONS_00061400-exon-scaffold_358-1510915933:582850..582894 | Clytia hemisphaerica | exon |
| TCONS_00061400-exon-scaffold_358-1575043694:582850..582894 | TCONS_00061400-exon-scaffold_358-1575043694:582850..582894 | Clytia hemisphaerica | exon |
| TCONS_00061400-exon-scaffold_358-1491911889:583187..584953 | TCONS_00061400-exon-scaffold_358-1491911889:583187..584953 | Clytia hemisphaerica | exon |
| TCONS_00061400-exon-scaffold_358-1510915933:583187..584953 | TCONS_00061400-exon-scaffold_358-1510915933:583187..584953 | Clytia hemisphaerica | exon |
| TCONS_00061400-exon-scaffold_358-1575043694:583187..584953 | TCONS_00061400-exon-scaffold_358-1575043694:583187..584953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:582850..584953 + |
Blast
The following BLAST results are available for this feature:
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