|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061398 ID=TCONS_00061398|Name=TCONS_00061398|organism=Clytia hemisphaerica|type=transcript|length=2161bp
CTTTTGAAGGACTACTattcattttaaagatttttaactaaaattttggt
aacaGCGTTTACATTACAATAAAAATAATGATTAATTGGAGATCAACAAA
GCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTTTGACTTTATTATACT
ACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGAGAGTCAACCA
GATGATTTCCAACCAGATGAATTCCAACCAATTGAAGTTTACAAGCAAAC
ATGGAAAGGAGATTGTCCATACCCAAAATATGTTGAAATGGAGAAGCTAG
AGAGACAGAAATGGTTTCCACGATATTTGCACCATCTGCAGAAAgtcaat
ttgaagaaaattgataaatatTATTGGAACGATAAGTGTGTCAGATGGTG
GCACCCAAACCCGAAAAATACCTGGTCCTTTTATCCACATCGTAAAAAAA
CGTGGAAGCCCGCCGTACAACCAGACCCAAGTTTTATCCGTCCAAATTGT
ACTTTTGGACAAGAGCTGAAACCACCGACAACCTGTTCAAAAATGCGCCA
ACGATTATGGGACGAGTTGGATAAAATGGGAGCTGTTTATTTCCCGAGAA
GTGGAACAGAGTTGGGTGTTTTAAGAGGAAGTTCTTATTTAACTTCAGAT
GGCGATATAGACATACACGTAGACGTCCCTCAGGACATATTATTCAAAAG
ATTGCGCAAGGTTTTAAAAGGGATTGCAATGGATCCGGGCGGCAGACCTT
CGGCCGAAGTAAGTTGGATACAAAGCGGATGTCCACATAATAAAATGGTT
TTTAACGATTTCATGGTTGATGAAATGATGGAGGAAGGGGGTACAAGACC
TACCCTAAAATCTGTATGTACGTGTTATatgaattctgaaaaattatCAT
GTCATAAAGATGCTAAGAGCCGAATGTATGGTCAGTACGGACCTTCCTGG
TTTGTACCACTTCACGTCAAATACTTAGATGCTCCACACGGTGcacatgt
aaacaaaaaatgtagAGAAAAACTGCAAAGCCTGTTGTCACCTGATGGAT
TTATCAACGAAAAGGCCGTCAGAGATCTGGATCCTAGTATTGTGTATGGC
GAAGATGAAATGCAGATGATTTTAGCGCAATTAAATATACTTCATTACAC
GATCAAGACAACACTAGAGCATAAACGCACAAAATATAAGAAAGGGTATT
TCTTTTTTAACGCCAAAGAAAATTAATTAGACGTTGTACGGCTCTTTTAC
AAATTTCTAGATACAGTGGACTGTCGCAAATTCAAACTTACACTATTCga
gttttaaatatttccctcttataggggaatatttgttaaaGCGGCTTTTT
CAGGATAGATGCAAATTCAGAAGCGGTCGCGTAGTCGATCGCGCGATCTG
AAAGCGTGCTTTGATGGAGAGCTATAGAgatggactcactcacaaagata
aaaagcagCGCTTTCTTAAATAATTCAAATACGTAAGTGAAAGGTGAATA
TAACTAAGCGTTTGTAAACATTCGGCGTGAGAGCTTTTAATGGCTTCCAA
TTTTAGAAGGATTATGGCTTTTGATGTGAAACTCCACTTGCTGCTATCTT
tattttatcttgttttttgGTGCTTTGTTGagtatttaaaaaggtttatt
tgTTTACTACTTAGTATTTTATGTTCGTGTAGTTTTATGAATGCaccaat
gggctcttccagaaaaaatccgttcatggggggtggaggatgtattattt
ttttcatgaattacccctggacattttgattttcaacccaCTGggcacgg
gttatacccctggacaaacatcaaatcaaccccgtggacacaaaaaatta
ccccttgacattggaatttaccccctggacattggaattttttggcattt
tttcaatacccctggaaaattcatcctccaccccccatgaacggactttt
tctggaagagcccgaTACATTGTTAGTGCTCTGTAGTATATACAATTAAA
GTGTCGACTTTTTTCTTCAACACCGCACACACCACAACAACAGCAACACA
ACCCTTAACTACACAGGTCAGGTATGATTTTTTCTCCCTTTGTAAATAAG
TAGTCATAAGTCTTGATATTAAGATGATTTGTgccaaacagtcagtttta
ccAAGCATTTT Run BLAST on NCBI protein sequence of TCONS_00061398-protein >TCONS_00061398-protein ID=TCONS_00061398-protein|Name=TCONS_00061398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MINWRSTKPLKVLTVILMVLTLLYYKKDLPKRNKATTESQPDDFQPDEFQ
PIEVYKQTWKGDCPYPKYVEMEKLERQKWFPRYLHHLQKVNLKKIDKYYW
NDKCVRWWHPNPKNTWSFYPHRKKTWKPAVQPDPSFIRPNCTFGQELKPP
TTCSKMRQRLWDELDKMGAVYFPRSGTELGVLRGSSYLTSDGDIDIHVDV
PQDILFKRLRKVLKGIAMDPGGRPSAEVSWIQSGCPHNKMVFNDFMVDEM
MEEGGTRPTLKSVCTCYMNSEKLSCHKDAKSRMYGQYGPSWFVPLHVKYL
DAPHGAHVNKKCREKLQSLLSPDGFINEKAVRDLDPSIVYGEDEMQMILA
QLNILHYTIKTTLEHKRTKYKKGYFFFNAKEN Run BLAST on NCBI transcript from alignment at scaffold_358:581120..584953+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061398 ID=TCONS_00061398|Name=TCONS_00061398|organism=Clytia hemisphaerica|type=transcript|length=3834bp|location=Sequence derived from alignment at scaffold_358:581120..584953+ (Clytia hemisphaerica)
CTTTTGAAGGACTACTattcattttaaagatttttaactaaaattttggt
aacaGCGTTTACATTACAATAAAAATAATGATTAATTGGAGATCAACAAA
GCCTTTAAAGGTTCTCACTGTAATCTTGATGGTTTTGACTTTATTATACT
ACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGAGTGAGTAACT
TTTTgtctaacctgataacagatagttagaattttcttacgcgcacggta
taCTTCTNCTACAAGAAGGATCTGCCCAAGCGGAACAAAGCCACAACAGA
GTGAGTAACTTTTTgtctaacctgataacagatagttagaattttcttac
gtgcacagTATACTTCTAAACGCGCTTGAAAATtaactactttaatcgta
gaaattttagcgggactaattttagcgttttagcgagttttccctatttt
cactaaaataaatctcgctaaacaCGCCGAAtcaacagatcgctaaaatt
tatccgcgcgaaatttctggttatactgccttgatacatttttatcaata
ggaagggtttcagtgcaaagaaatgctagaaaacgaattcagtcaataat
gtaatacgagtattcgctaaaataaatccaaaaaaaatcaagattttcct
gactcgctaatatacgctaaaattcgtctcgctaaaatttctacgattaa
agtattaaGAATCTTGTTTCACGCCGAGAtgtcaaaagttgaattttttc
taaTATATCGCTTTATATTCCAacgcaatacaccttttcgacagtagtcg
cgcgggcattttttgtccgctttatcccactaaaactgtCCCAATCATTT
TTTaacgcatttttctattgtctataggtgcgaaacaAGGACtgagacgg
ttttagtgggataaagtggACAAAATATGCCCGCAcgactacggttgaaa
aggtgtatctAGGTAGCGATGACTTTGTTGTCTTTCCCAGTCTTTTTTAG
TGTTGCGCGGTCCTTACGAAATCGATGTTATTCATTAGTTTGATTAGTTT
TTCGTCGGGCTTGACTGAccctaaaatctcaaaaatcaaaataaaaataa
aattgatttcattttgTTCTTGTCTTTAGGGCAGAGTTGAAGTATTCTAG
ACTTTACCCCGATTCTTAATACTTTGGacccactgttcttaaattgttct
tatatgaaatattcttataagaaatacTGTATGCGACACTATTCCCATTG
ATGTTGTAAAGTTATTTTGGCCCACCTAAAATTTAAGcactttattttta
ataaattctATATGTAGAGTGTATGCGACACACTTTTTCATTAACTTTGC
TAAATTTTAACACAAGCATACATAAGCTATTTTTGCCCACCAAAAtgtta
gtttaaaaaaaaatctctcggcaaaataattttcttttttaagtgtCATG
TATTTTACATaaccttttcaaatttttataagGAGTCAACCAGATGATTT
CCAACCAGATGAATTCCAACCAATTGAAGTTTACAAGCAAACATGGAAAG
GAGATTGTCCATACCCAAAATATGTTGAAATGGAGAAGCTAGAGAGACAG
AAATGGTTTCCACGATATTTGCACCATCTGCAGAAAgtcaatttgaagaa
aattgataaatatTATTGGAACGATAAGTGTGTCAGGTATAAAATAATgc
agtctctttaactcgaatgtctccttaagttttgaagaaaattgataaat
atTATTGGAACGATAAATGTGTCAGGTATAAAATAATgcagtctctttaa
ctcgaatgtcttcttaaAAGTTGAATCAGTTTTTTCCTATCTAGAGTTAA
CAATGTCATATAAACCTTACTCCgcaactcaaaatttccttaactcctta
actcaaaacaaatttgtgttccccgtgcatgttatgagttatggagactt
aaTTTTCTAGTCTATGCAATCTAAATTTGCCAGGAATGCCTTCGTTTTAT
AGGtgttaaatttttaagtttcAAAAAGGTGTctgaaaattatttatttt
catttttaatatcATAGATGGTGGCACCCAAACCCGAAAAATACCTGGTC
CTTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTACAACCAGACC
CAAGTTTTATCCGTCCAAATTGTACTTTTGGACAAGAGCTGAAACCACCG
ACAACCTGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAAT
GGGAGCTGTTTATTTCCCGAGAAGTGGAACAGAGTTGGGTGTTTTAAGAG
GAAGTTCTTATTTAACTTCAGATGGCGATATAGACATACACGTAGACGTC
CCTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGGATTGC
AATGGATCCGGGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGCG
GATGTCCACATAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATG
ATGGAGGAAGGGGGTACAAGACCTACCCTAAAATCTGTATGTACGTGTTA
TatgaattctgaaaaattatCATGTCATAAAGATGCTAAGAGCCGAATGT
ATGGTCAGTACGGACCTTCCTGGTTTGTACCACTTCACGTCAAATACTTA
GATGCTCCACACGGTGcacatgtaaacaaaaaatgtagAGAAAAACTGCA
AAGCCTGTTGTCACCTGATGGATTTATCAACGAAAAGGCCGTCAGAGATC
TGGATCCTAGTATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCG
CAATTAAATATACTTCATTACACGATCAAGACAACACTAGAGCATAAACG
CACAAAATATAAGAAAGGGTATTTCTTTTTTAACGCCAAAGAAAATTAAT
TAGACGTTGTACGGCTCTTTTACAAATTTCTAGATACAGTGGACTGTCGC
AAATTCAAACTTACACTATTCgagttttaaatatttccctcttatagggg
aatatttgttaaaGCGGCTTTTTCAGGATAGATGCAAATTCAGAAGCGGT
CGCGTAGTCGATCGCGCGATCTGAAAGCGTGCTTTGATGGAGAGCTATAG
AgatggactcactcacaaagataaaaagcagCGCTTTCTTAAATAATTCA
AATACGTAAGTGAAAGGTGAATATAACTAAGCGTTTGTAAACATTCGGCG
TGAGAGCTTTTAATGGCTTCCAATTTTAGAAGGATTATGGCTTTTGATGT
GAAACTCCACTTGCTGCTATCTTtattttatcttgttttttgGTGCTTTG
TTGagtatttaaaaaggtttatttgTTTACTACTTAGTATTTTATGTTCG
TGTAGTTTTATGAATGCaccaatgggctcttccagaaaaaatccgttcat
ggggggtggaggatgtattatttttttcatgaattacccctggacatttt
gattttcaacccaCTGggcacgggttatacccctggacaaacatcaaatc
aaccccgtggacacaaaaaattaccccttgacattggaatttaccccctg
gacattggaattttttggcattttttcaatacccctggaaaattcatcct
ccaccccccatgaacggactttttctggaagagcccgaTACATTGTTAGT
GCTCTGTAGTATATACAATTAAAGTGTCGACTTTTTTCTTCAACACCGCA
CACACCACAACAACAGCAACACAACCCTTAACTACACAGGTCAGGTATGA
TTTTTTCTCCCTTTGTAAATAAGTAGTCATAAGTCTTGATATTAAGATGA
TTTGTgccaaacagtcagttttaccAAGCATTTT Coding sequence (CDS) from alignment at scaffold_358:581120..584953+ >TCONS_00061398 ID=TCONS_00061398|Name=TCONS_00061398|organism=Clytia hemisphaerica|type=CDS|length=3447bp|location=Sequence derived from alignment at scaffold_358:581120..584953+ (Clytia hemisphaerica)
ATGATTAATTGGAGATCAACAAAGCCTTTAAAGGTTCTCACTGTAATCTT
GATGGTTTTGACTTTATTATACTACAAGAAGGATCTGCCCAAGCGGAACA
AAGCCACAACAGAGAGTCAACCAGATGATTTCCAACCAGATGAATTCCAA
CCAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATACCCAAA
ATATGTTGAAATGGAGAAGCTAGAGAGACAGAAATGGTTTCCACGATATT
TGCACCATCTGCAGAAAgtcaatttgaagaaaattgataaatatTATTGG
AACGATAAGTGTGTCAGATGGTGGCACCCAAACCCGAAAAATACCTGGTC
CTTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTACAACCAGACC
CAAGTTTTATCCGTCCAAATTGTACTTTTGGACAAGAGCTGAAACCACCG
ACAACCTGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAAT
GGGAGCTGTTTATTTCCCGAGAAGTGGAACAGAGTTGGGTGTTTTAAGAG
GAAGTTCTTATTTAACTTCAGATGGCGATATAGACATACACGTAGACGTC
CCTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGGATTGC
AATGGATCCGGGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGCG
GATGTCCACATAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATG
ATGGAGGAAGGGGGTACAAGACCTACCCTAAAATCTGTATGTACGTGTTA
TatgaattctgaaaaattatCATGTCATAAAGATGCTAAGAGCCGAATGT
ATGGTCAGTACGGACCTTCCTGGTTTGTACCACTTCACGTCAAATACTTA
GATGCTCCACACGGTGcacatgtaaacaaaaaatgtagAGAAAAACTGCA
AAGCCTGTTGTCACCTGATGGATTTATCAACGAAAAGGCCGTCAGAGATC
TGGATCCTAGTATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCG
CAATTAAATATACTTCATTACACGATCAAGACAACACTAGAGCATAAACG
CACAAAATATAAGAAAGGGTATTTCTTTTTTAACGCCAAAGAAAATTAAA
TGATTAATTGGAGATCAACAAAGCCTTTAAAGGTTCTCACTGTAATCTTG
ATGGTTTTGACTTTATTATACTACAAGAAGGATCTGCCCAAGCGGAACAA
AGCCACAACAGAGAGTCAACCAGATGATTTCCAACCAGATGAATTCCAAC
CAATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATACCCAAAA
TATGTTGAAATGGAGAAGCTAGAGAGACAGAAATGGTTTCCACGATATTT
GCACCATCTGCAGAAAgtcaatttgaagaaaattgataaatatTATTGGA
ACGATAAGTGTGTCAGATGGTGGCACCCAAACCCGAAAAATACCTGGTCC
TTTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTACAACCAGACCC
AAGTTTTATCCGTCCAAATTGTACTTTTGGACAAGAGCTGAAACCACCGA
CAACCTGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAATG
GGAGCTGTTTATTTCCCGAGAAGTGGAACAGAGTTGGGTGTTTTAAGAGG
AAGTTCTTATTTAACTTCAGATGGCGATATAGACATACACGTAGACGTCC
CTCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGGATTGCA
ATGGATCCGGGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGCGG
ATGTCCACATAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATGA
TGGAGGAAGGGGGTACAAGACCTACCCTAAAATCTGTATGTACGTGTTAT
atgaattctgaaaaattatCATGTCATAAAGATGCTAAGAGCCGAATGTA
TGGTCAGTACGGACCTTCCTGGTTTGTACCACTTCACGTCAAATACTTAG
ATGCTCCACACGGTGcacatgtaaacaaaaaatgtagAGAAAAACTGCAA
AGCCTGTTGTCACCTGATGGATTTATCAACGAAAAGGCCGTCAGAGATCT
GGATCCTAGTATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCGC
AATTAAATATACTTCATTACACGATCAAGACAACACTAGAGCATAAACGC
ACAAAATATAAGAAAGGGTATTTCTTTTTTAACGCCAAAGAAAATTAAAT
GATTAATTGGAGATCAACAAAGCCTTTAAAGGTTCTCACTGTAATCTTGA
TGGTTTTGACTTTATTATACTACAAGAAGGATCTGCCCAAGCGGAACAAA
GCCACAACAGAGAGTCAACCAGATGATTTCCAACCAGATGAATTCCAACC
AATTGAAGTTTACAAGCAAACATGGAAAGGAGATTGTCCATACCCAAAAT
ATGTTGAAATGGAGAAGCTAGAGAGACAGAAATGGTTTCCACGATATTTG
CACCATCTGCAGAAAgtcaatttgaagaaaattgataaatatTATTGGAA
CGATAAGTGTGTCAGATGGTGGCACCCAAACCCGAAAAATACCTGGTCCT
TTTATCCACATCGTAAAAAAACGTGGAAGCCCGCCGTACAACCAGACCCA
AGTTTTATCCGTCCAAATTGTACTTTTGGACAAGAGCTGAAACCACCGAC
AACCTGTTCAAAAATGCGCCAACGATTATGGGACGAGTTGGATAAAATGG
GAGCTGTTTATTTCCCGAGAAGTGGAACAGAGTTGGGTGTTTTAAGAGGA
AGTTCTTATTTAACTTCAGATGGCGATATAGACATACACGTAGACGTCCC
TCAGGACATATTATTCAAAAGATTGCGCAAGGTTTTAAAAGGGATTGCAA
TGGATCCGGGCGGCAGACCTTCGGCCGAAGTAAGTTGGATACAAAGCGGA
TGTCCACATAATAAAATGGTTTTTAACGATTTCATGGTTGATGAAATGAT
GGAGGAAGGGGGTACAAGACCTACCCTAAAATCTGTATGTACGTGTTATa
tgaattctgaaaaattatCATGTCATAAAGATGCTAAGAGCCGAATGTAT
GGTCAGTACGGACCTTCCTGGTTTGTACCACTTCACGTCAAATACTTAGA
TGCTCCACACGGTGcacatgtaaacaaaaaatgtagAGAAAAACTGCAAA
GCCTGTTGTCACCTGATGGATTTATCAACGAAAAGGCCGTCAGAGATCTG
GATCCTAGTATTGTGTATGGCGAAGATGAAATGCAGATGATTTTAGCGCA
ATTAAATATACTTCATTACACGATCAAGACAACACTAGAGCATAAACGCA
CAAAATATAAGAAAGGGTATTTCTTTTTTAACGCCAAAGAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061398-exon-scaffold_358-1491911889:581120..581309 | TCONS_00061398-exon-scaffold_358-1491911889:581120..581309 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1510915933:581120..581309 | TCONS_00061398-exon-scaffold_358-1510915933:581120..581309 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1575043694:581120..581309 | TCONS_00061398-exon-scaffold_358-1575043694:581120..581309 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1491911889:582602..582805 | TCONS_00061398-exon-scaffold_358-1491911889:582602..582805 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1510915933:582602..582805 | TCONS_00061398-exon-scaffold_358-1510915933:582602..582805 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1575043694:582602..582805 | TCONS_00061398-exon-scaffold_358-1575043694:582602..582805 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1491911889:583187..584953 | TCONS_00061398-exon-scaffold_358-1491911889:583187..584953 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1510915933:583187..584953 | TCONS_00061398-exon-scaffold_358-1510915933:583187..584953 | Clytia hemisphaerica | exon |
| TCONS_00061398-exon-scaffold_358-1575043694:583187..584953 | TCONS_00061398-exon-scaffold_358-1575043694:583187..584953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:581120..584953 + |
Blast
The following BLAST results are available for this feature:
|
