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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061396 ID=TCONS_00061396|Name=TCONS_00061396|organism=Clytia hemisphaerica|type=transcript|length=1299bp
AAACGAGAGATAGAGTGACAGTCAACATCGACCAGAGTTTTGACAAGACC
GTAATAATGGAACTTGCTGTGTTTAGCTTCTTGCTTGGTGTAAACCTCAT
TGGTGTTTCAATTGCAGAGCCGGTGGTGGTCTCTGGGGATCACCAAGAAA
TCGAAATGCGACGCGTCTTAAATGGCCAAGTTATCAAGACAATCAAGATT
AAGGAATATGATGATATAAGGCTTGCCGTGTTTTATGAGCAAGATGTTAT
ATTTTATGCATCTGATAAGAAGGTCTACATGATTGAATTATTGGATGATA
ATGGTTTACCAAATTTATCGAACAAAGGATTGTTATTGACCGATCCGTTA
GCTGACCACCGTGAAACTCAAATCTACGAATTCCAATATACAATATGGAG
TATAGCCATTGATAAAGTGCGACGAAAGTTAATCATTTGCGAAATGTCTG
ATATCTACGAAATGGATTTCGACGGTACTGGATTAAGAAAGATTTTGACA
GATGGTTATCGGTTTAACGCTTTACAAATCATTGGTAACCAACTCTATTT
TTCAGACAGAATTGCAGCACACTGGAAAAGCCAGTACGGTATCTACCGTA
TGACAATTACACCGAATAAGACCATATCCCGGACATCATCGACACCAGAG
TTTCATCAAATCGTTGGTGGACACAAAGAAGATGTTATAAGCATGATGGT
GGAGAAATTCACCAAGAAGTTGTTCTTCAGACGTGGAACAAATAGTATCC
ATGTTGTTGATACCAACCTCCCTGCTGCCAATCATCCAGTACAATCGCCG
AGGGTTGTTATTGCGGATAGCCAATACGTTGATGGCTGGGGTGGTATTGC
TGTCCATGGCAACCGGTTAGTTTGGAACCGCAAGTTAAGCAGTAATGGTC
AATTGCTTCTTGGTTTGATGAATAaagatttgaattttctttccaAACGC
AATATCTATGTTTATGGTAAGGCAAGATATGGTTATTTGCCAAGACAGTT
GGATATCTTTGATCATCTGTTTCCGACTAAGGCACCAGCACCAGTGACGA
CACTTCAACCGACCACTCAAGGCCAATGCATGTGTCCCTGTGCGTGTTCA
GCTAAAGCCAACAGCTATATGAAGAGTgctaaaaaacttcaaaaagttca
TTGATTTAGCTTTTTCAGAACATTATAGTATTTTGAATATaacaatattt
tattttttgtctgTATCGCTTTTACATTATTACGAAGCCTCGAAATTATT
ATGAAGGAAAAATAAAATCCAAGGATATCAATTAAACTGTGTTTTTGAT Run BLAST on NCBI protein sequence of TCONS_00061396-protein >TCONS_00061396-protein ID=TCONS_00061396-protein|Name=TCONS_00061396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
TRDRVTVNIDQSFDKTVIMELAVFSFLLGVNLIGVSIAEPVVVSGDHQEI
EMRRVLNGQVIKTIKIKEYDDIRLAVFYEQDVIFYASDKKVYMIELLDDN
GLPNLSNKGLLLTDPLADHRETQIYEFQYTIWSIAIDKVRRKLIICEMSD
IYEMDFDGTGLRKILTDGYRFNALQIIGNQLYFSDRIAAHWKSQYGIYRM
TITPNKTISRTSSTPEFHQIVGGHKEDVISMMVEKFTKKLFFRRGTNSIH
VVDTNLPAANHPVQSPRVVIADSQYVDGWGGIAVHGNRLVWNRKLSSNGQ
LLLGLMNKDLNFLSKRNIYVYGKARYGYLPRQLDIFDHLFPTKAPAPVTT
LQPTTQGQCMCPCACSAKANSYMKSAKKLQKVH Run BLAST on NCBI transcript from alignment at scaffold_358:480762..482312+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061396 ID=TCONS_00061396|Name=TCONS_00061396|organism=Clytia hemisphaerica|type=transcript|length=1551bp|location=Sequence derived from alignment at scaffold_358:480762..482312+ (Clytia hemisphaerica)
AAACGAGAGATAGAGTGACAGTCAACATCGACCAGAGTTTTGACAAGACC
GTAATAATGGAACTTGCTGTGTTTAGCTTCTTGCTTGGTGTAAACCTCAT
TGGTGTTTCAATTGCAGAGCCGGTGGTGGTCTCTGGGGATCACCAAGAAA
TCGAAATGCGACGCGTCTTAAATGGCCAAGTTATCAAGACAATCAAGATT
AAGGAATATGATGATATAAGGCTTGCCGTGTTTTATGAGCAAGATGTTAT
ATTTTATGCATCTGATAAGAAGGTCTACATGATTGAATTATTGGATGATA
ATGGTTTACCAAATTTATCGAACAAAGGTGAGTGAGTGAGAAAAACAAGA
GGCCACATAATTCGAACTTCTGCAAATCGATTACACATTTTTTCTTATAT
ACAAGAACGCTGTTTCTTCTTAActctttgagttttaagcctaaaaaagt
tatcaaatttttcttgttttaccCATTTTAATATAATTAAAATTATTATA
ATAAAATGATTAAACTCCCTTCCTTCCTAACTCGAACTCGACGACTTGAC
CAACATACTTTGTATTACTTCCATTTCAGGATTGTTATTGACCGATCCGT
TAGCTGACCACCGTGAAACTCAAATCTACGAATTCCAATATACAATATGG
AGTATAGCCATTGATAAAGTGCGACGAAAGTTAATCATTTGCGAAATGTC
TGATATCTACGAAATGGATTTCGACGGTACTGGATTAAGAAAGATTTTGA
CAGATGGTTATCGGTTTAACGCTTTACAAATCATTGGTAACCAACTCTAT
TTTTCAGACAGAATTGCAGCACACTGGAAAAGCCAGTACGGTATCTACCG
TATGACAATTACACCGAATAAGACCATATCCCGGACATCATCGACACCAG
AGTTTCATCAAATCGTTGGTGGACACAAAGAAGATGTTATAAGCATGATG
GTGGAGAAATTCACCAAGAAGTTGTTCTTCAGACGTGGAACAAATAGTAT
CCATGTTGTTGATACCAACCTCCCTGCTGCCAATCATCCAGTACAATCGC
CGAGGGTTGTTATTGCGGATAGCCAATACGTTGATGGCTGGGGTGGTATT
GCTGTCCATGGCAACCGGTTAGTTTGGAACCGCAAGTTAAGCAGTAATGG
TCAATTGCTTCTTGGTTTGATGAATAaagatttgaattttctttccaAAC
GCAATATCTATGTTTATGGTAAGGCAAGATATGGTTATTTGCCAAGACAG
TTGGATATCTTTGATCATCTGTTTCCGACTAAGGCACCAGCACCAGTGAC
GACACTTCAACCGACCACTCAAGGCCAATGCATGTGTCCCTGTGCGTGTT
CAGCTAAAGCCAACAGCTATATGAAGAGTgctaaaaaacttcaaaaagtt
caTTGATTTAGCTTTTTCAGAACATTATAGTATTTTGAATATaacaatat
tttattttttgtctgTATCGCTTTTACATTATTACGAAGCCTCGAAATTA
TTATGAAGGAAAAATAAAATCCAAGGATATCAATTAAACTGTGTTTTTGA
T Coding sequence (CDS) from alignment at scaffold_358:480762..482312+ >TCONS_00061396 ID=TCONS_00061396|Name=TCONS_00061396|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_358:480762..482312+ (Clytia hemisphaerica)
ACGAGAGATAGAGTGACAGTCAACATCGACCAGAGTTTTGACAAGACCGT
AATAATGGAACTTGCTGTGTTTAGCTTCTTGCTTGGTGTAAACCTCATTG
GTGTTTCAATTGCAGAGCCGGTGGTGGTCTCTGGGGATCACCAAGAAATC
GAAATGCGACGCGTCTTAAATGGCCAAGTTATCAAGACAATCAAGATTAA
GGAATATGATGATATAAGGCTTGCCGTGTTTTATGAGCAAGATGTTATAT
TTTATGCATCTGATAAGAAGGTCTACATGATTGAATTATTGGATGATAAT
GGTTTACCAAATTTATCGAACAAAGGATTGTTATTGACCGATCCGTTAGC
TGACCACCGTGAAACTCAAATCTACGAATTCCAATATACAATATGGAGTA
TAGCCATTGATAAAGTGCGACGAAAGTTAATCATTTGCGAAATGTCTGAT
ATCTACGAAATGGATTTCGACGGTACTGGATTAAGAAAGATTTTGACAGA
TGGTTATCGGTTTAACGCTTTACAAATCATTGGTAACCAACTCTATTTTT
CAGACAGAATTGCAGCACACTGGAAAAGCCAGTACGGTATCTACCGTATG
ACAATTACACCGAATAAGACCATATCCCGGACATCATCGACACCAGAGTT
TCATCAAATCGTTGGTGGACACAAAGAAGATGTTATAAGCATGATGGTGG
AGAAATTCACCAAGAAGTTGTTCTTCAGACGTGGAACAAATAGTATCCAT
GTTGTTGATACCAACCTCCCTGCTGCCAATCATCCAGTACAATCGCCGAG
GGTTGTTATTGCGGATAGCCAATACGTTGATGGCTGGGGTGGTATTGCTG
TCCATGGCAACCGGTTAGTTTGGAACCGCAAGTTAAGCAGTAATGGTCAA
TTGCTTCTTGGTTTGATGAATAaagatttgaattttctttccaAACGCAA
TATCTATGTTTATGGTAAGGCAAGATATGGTTATTTGCCAAGACAGTTGG
ATATCTTTGATCATCTGTTTCCGACTAAGGCACCAGCACCAGTGACGACA
CTTCAACCGACCACTCAAGGCCAATGCATGTGTCCCTGTGCGTGTTCAGC
TAAAGCCAACAGCTATATGAAGAGTgctaaaaaacttcaaaaagttcaTT
GAACGAGAGATAGAGTGACAGTCAACATCGACCAGAGTTTTGACAAGACC
GTAATAATGGAACTTGCTGTGTTTAGCTTCTTGCTTGGTGTAAACCTCAT
TGGTGTTTCAATTGCAGAGCCGGTGGTGGTCTCTGGGGATCACCAAGAAA
TCGAAATGCGACGCGTCTTAAATGGCCAAGTTATCAAGACAATCAAGATT
AAGGAATATGATGATATAAGGCTTGCCGTGTTTTATGAGCAAGATGTTAT
ATTTTATGCATCTGATAAGAAGGTCTACATGATTGAATTATTGGATGATA
ATGGTTTACCAAATTTATCGAACAAAGGATTGTTATTGACCGATCCGTTA
GCTGACCACCGTGAAACTCAAATCTACGAATTCCAATATACAATATGGAG
TATAGCCATTGATAAAGTGCGACGAAAGTTAATCATTTGCGAAATGTCTG
ATATCTACGAAATGGATTTCGACGGTACTGGATTAAGAAAGATTTTGACA
GATGGTTATCGGTTTAACGCTTTACAAATCATTGGTAACCAACTCTATTT
TTCAGACAGAATTGCAGCACACTGGAAAAGCCAGTACGGTATCTACCGTA
TGACAATTACACCGAATAAGACCATATCCCGGACATCATCGACACCAGAG
TTTCATCAAATCGTTGGTGGACACAAAGAAGATGTTATAAGCATGATGGT
GGAGAAATTCACCAAGAAGTTGTTCTTCAGACGTGGAACAAATAGTATCC
ATGTTGTTGATACCAACCTCCCTGCTGCCAATCATCCAGTACAATCGCCG
AGGGTTGTTATTGCGGATAGCCAATACGTTGATGGCTGGGGTGGTATTGC
TGTCCATGGCAACCGGTTAGTTTGGAACCGCAAGTTAAGCAGTAATGGTC
AATTGCTTCTTGGTTTGATGAATAaagatttgaattttctttccaAACGC
AATATCTATGTTTATGGTAAGGCAAGATATGGTTATTTGCCAAGACAGTT
GGATATCTTTGATCATCTGTTTCCGACTAAGGCACCAGCACCAGTGACGA
CACTTCAACCGACCACTCAAGGCCAATGCATGTGTCCCTGTGCGTGTTCA
GCTAAAGCCAACAGCTATATGAAGAGTgctaaaaaacttcaaaaagttca
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061396-exon-scaffold_358-1491911889:480762..481088 | TCONS_00061396-exon-scaffold_358-1491911889:480762..481088 | Clytia hemisphaerica | exon |
| TCONS_00061396-exon-scaffold_358-1510915933:480762..481088 | TCONS_00061396-exon-scaffold_358-1510915933:480762..481088 | Clytia hemisphaerica | exon |
| TCONS_00061396-exon-scaffold_358-1575043694:480762..481088 | TCONS_00061396-exon-scaffold_358-1575043694:480762..481088 | Clytia hemisphaerica | exon |
| TCONS_00061396-exon-scaffold_358-1491911889:481341..482312 | TCONS_00061396-exon-scaffold_358-1491911889:481341..482312 | Clytia hemisphaerica | exon |
| TCONS_00061396-exon-scaffold_358-1510915933:481341..482312 | TCONS_00061396-exon-scaffold_358-1510915933:481341..482312 | Clytia hemisphaerica | exon |
| TCONS_00061396-exon-scaffold_358-1575043694:481341..482312 | TCONS_00061396-exon-scaffold_358-1575043694:481341..482312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:480762..482312 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011042 | 6-blade_b-propeller_TolB-like |
Blast
The following BLAST results are available for this feature:
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