TCONS_00061378 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061378
Unique Name	TCONS_00061378
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	789

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_358:132435..137559+
coding sequence from alignment at scaffold_358:132435..137559+

transcript sequence

>TCONS_00061378 ID=TCONS_00061378|Name=TCONS_00061378|organism=Clytia hemisphaerica|type=transcript|length=789bp
TTAGAATTGAAATTAAACAAATACAAAGTAGTGAAAATAAAAGTATAAAC
AATATGTATAGTTTTGATGGCAAACATAAATCAAGAACAAAAGTCTCTCT
TGGTGGCGCATCTAAACAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAA
GAGAAGAAAGATTGAAAAGAGAGCTATCCAGGAAGCAAAATGAAGCAGCG
ATCAAGATTCAAGGGTGGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGag
CAACAATTTTCGTGACAGTTTCGATAAAGCGTTAGAAAATAATGCTGATC
TCACTGGTATCACCATTGCATCAAAACTGATTTATTTCTTCTATAACACT
GAATTGGATTATCAAAGACTGgtACTTTTATCACAAAAGCTGTTGAAATT
GGCTTCAAGTAAACAGATTCAAACGTTGTTTTCAAGCAATTCTGACGAAT
GGTTTCACCGTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGACTTTATCA
TCATCAGGTGATAGGAACGTCTCCATACCTTTGAGAATGTTGGAAGTGTT
CACCAGCTTAAAAACATATGAATGGCTACCTTCAGAAGAAAACCAAATGA
AAACTGTCTTCTCCATCACATCTCATCTTACAACCAAAGgtTATTTCAGT
CAAATGAGGCAACTTCTGATCACACGAGTACCAGATAGCCTGGAGCCGTC
ATCTCATCCACCAACACCACTAGCCGGTGCTATCAAAGACCTCATTATGA
AACCATTGGAATTAGTAATGGGAGACAGCCCATTATCGG

Run BLAST on NCBI

protein sequence of TCONS_00061378-protein

>TCONS_00061378-protein ID=TCONS_00061378-protein|Name=TCONS_00061378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
RIEIKQIQSSENKSINNMYSFDGKHKSRTKVSLGGASKQVGKKALIESAR
EERLKRELSRKQNEAAIKIQGWTRSCFVQKSLSNNFRDSFDKALENNADL
TGITIASKLIYFFYNTELDYQRLVLLSQKLLKLASSKQIQTLFSSNSDEW
FHRLKRVLVVCSRTLSSSGDRNVSIPLRMLEVFTSLKTYEWLPSEENQMK
TVFSITSHLTTKGYFSQMRQLLITRVPDSLEPSSHPPTPLAGAIKDLIMK
PLELVMGDSPLS

Run BLAST on NCBI

transcript from alignment at scaffold_358:132435..137559+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061378 ID=TCONS_00061378|Name=TCONS_00061378|organism=Clytia hemisphaerica|type=transcript|length=5125bp|location=Sequence derived from alignment at scaffold_358:132435..137559+ (Clytia hemisphaerica)
TTAGAATTGAAATTAAACAAATACAAAGTAGTGAAAATAAAAGTATAAAC
AATATGTATAGTTTTGATGGCAAACATAAATCAAGAACAAAAGTCTCTCT
TGGTGGCGCATCTAAACAGGTATAAGGGTTTTGCTTCATTCTATTTAATT
TCGAATCAAAATGAATGAAACAACATAgtgatttgaaaaaatatcagaat
attttctttgaaataccAGATACCCAATAATTTTACCATCATATCAGAAG
CCTCCTCAAACGCTTAGTCTGGTGgtaaaaatgaactttttttgCAATAA
CCTTTAACATCTTATCAATAAGGGAAATTGGAAATTTCCCCAGCTGTCTC
GCAGTAAGAAAAAGTCAATCAAGATTAGAAACTTAAtcgtcttttttctt
ttttctatgtTATTTTTAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAA
GAGAAGAAAGATTGAAAAGAGAGGTATGAGAGACaccactttatattttt
ttggaaagtatACATTTTATAATTTTGGACTGTTTTTGATACAACCACAT
GACTTTGTATTTACTCTATATCTATAATATCTAATCTATCCTTGCAATGT
CATCAGTAACATGAGTACACAGGGGTACACACTTTTGTTTAAATTGTTCG
CTGGGTCACATTGTTCAAGACCCTTCAACTCTCATTCCCATCCTATTCCT
CCTAAGCTTGCTCATGTCACCCAAAACTCCTTAAAGTATTTGAGGCATTA
AAAGGTTTGATAATTATTGTATGTTAAAATTTACGATTCCACCAAGTTTG
TCAATTAGGGATTTCTTGAAGCCTTATTTTAAAAATGTGCCTCTGTTTAT
CCCCCTAAAGCTATCCAGGAAGCAAAATGAAGCAGCGATCAAGATTCAAG
GGTGGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGGTATGTGGAATATTT
TTCttctcttataaataaatattatatcataagtttattttatattgtaT
TTTGTCAATATCTCTTGTCAATAGCACTCTTTAAGTTCGTATTAGATGTT
TAGGCTATTTTATAGGGAATGAAAAAAATGGCAGTGAATTAGGATgttgg
agcaagattttttgatttctaaGAGTGACAAGTTATGTTAAAACCTTTTT
GTCCTCAACTTTAAAATTTCTATGGATTATTTAGATGGTATTTGAATTGA
TTATTTagaattgtttaaaatttttgtttacttcagagTAACAATTTTCG
TGACAGTTTCGATAAAGCGTTAGAAAATAATGCTGATCTCACTGGTATCA
CCATTGCATCAAAGCTGATTTATTTCTTCTATAACACTGAATTGGATTAT
CAAAGACTGGTATAATGACTTTAATTattgttttcactttcatttttttc
tccagttgTGGACCTTATCattaagctctagtttagacggctgaCTTTCT
GcactgcctattctaattgttagagtaggcaaaaaGAGGGAACAAAGTTg
gtttttaaaatctttgcttggaaaggtttgaaagaagacattgcattgac
gtcaaacaAGGGCTATGCATCGACTTTAGACAGCGAACTAACTGCcctct
ttaattcacaattagaataggcagggcaaaaagtgggccgtctaaactag
agctaaggcATCCAACATTCAGGAATGACATTTTGATGGAATCGTTCTCA
AGTGTCGTTTGTCAGCTGTatgcactgacctttatataccctggacacaG
TTTCTTGATCCCGGTCAAGCAAAATTCtttgattgcaattttttttagaC
CTAAGTAGTATCATAATTAGTACcttaatggtagcactactaaGTGTCCA
AACTCAATGAAATGCAAATTAACCTACTTTGAGTACCACTACAACTTTAT
AAAAACTCTGATAGCCGATATAGCTTGGGCCAGGGTATATGAAAGTCAGT
GGCTGTATGTTTTGCTGCACGACCAAGGTCTTTTTTGAAGGCTTCTCCAA
GGTGTTCTTTTACGTTTGCCTTTACTACCTTTGTAGATGCCAAAAAAGCT
TTATTCTGGTATGAAGCAGTCCTTTCTTAACTCATAAAGTGTGGTCTGTT
TGTATTCTCAACGCTCTCCTTTGTTTATTTAGTGTGGTTATGCAAGGGGA
AATCCCCTGAAATCCTCTCTAGATCTTGAACAGACCCGTATTTGCTTGTT
NTGGATTATTTAGATGGTATTTGAATTGATTATTTagaattgtttaaaat
ttttgtttacttcagagCAACAATTTTCGTGACAGTTTCGATAAAGCGTT
AGAAAATAATGCTGATCTCACTGGTATCACCATTGCATCAAAACTGATTT
ATTTCTTCTATAACACTGAATTGGATTATCAAAGACTGGTATAATGACTT
TAATTattgttttcactttcatttttttctccagtaGTGGACCTTATCat
taagctctagtttagacggccgactttctgcactgcctattctaattgtt
agagtaggcaaaaagagggcacaaagttggttgttaaaatctttgcttgg
aataGCTAAGGCATCCAACATTCAGGAGTGACATTTTGATGGAATCGTTC
TCAAGTGTCGTTTGTCAGCTGTatgcactgacctttatataccctggaca
caGTTTCTTGATCCCGGTCAAGCAAAATTCtttgattgcaatttttttta
gaCCTAAGTAGTATCATAATTAGTACcttaatggtagcactactaaGTGT
CCAAACTCAATGAAATGCAAATTAACCTACTTTGAGTACCACTACAACTT
TATAAAAACTCTGATAGCCGATATAGCTTGGGCCAGGGTATATGAAAGTC
AGTGGCTGTATGTTTTGCTGCACGACCAAGGTCTTTTTTGAAGGCTTCTC
CAAGGTGTTCTTTTACGTTTGCCTTTACTACCTTTGTAGATGCCAAAAAA
GCTTTATTCTGGTATGAAGCAGTCCTTTCTTAACTCATAAAGTGTGGTCT
GTTTGTATTCTCAACGCTCTCCTTTGTTTATTTAGTGTGGTTATGCAAGG
GGAAATCCCCTGAAATCCTCTCTAGATCTTGAACAGACCCGTATTTGCTT
GTTATAATCAAAGGCAACTGTTATCCATCGTTGTTTTAGTGactcatttt
tttctctttcaggtACTTTTATCACAAAAGCTGTTGAAATTGGCTTCAAG
TAAACAGATTCAAACGTTGTTTTCAAGCAATTCTGACGAATGGTTTCACC
GTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGTAGATATGGTTGTCATCA
CCAGTGATCTTTCTTATAGTGTACTATGCTTTCATATACCTTGGACCAAG
CTTTATGCATCATCTCAtgctaatggtagcactactcgatATGGGTCAAC
TTATAattccatgaaattttctgtttgatttttttttcatccatTGATGA
GTAGTGCTTCCATTAGGGTACAACTTTCAAAAGATTCTGATCAAAGACTT
TAATTTGGTAGGATCGAGAAACCTTGTCCAATGTATAAAAAGATCAGTGG
TTATCCTCCAAGCAACTGAAGCTGGGTGTCCACTGAAAAATAATAAGTTC
GTCGCAAATACCTGTTGATAAAAAGGTTTTTAATTCGACGAACAAATTCG
CGACGAACTTATTTTTTCCCAGTGGACACCCATctttataattttaaaaa
caaatgataaaaacTCTGGTAGCCAAATTCTGTGTCAAAAAGGTgtgcag
tgtttttatttttggccgaaactttcaaacatttttcaagttataaaaaa
gttggtatcgttggaaagatattttttttttaaaattcgttcaagaaagt
gaagaaaatgaagaagacaaaaatgaacttcttgTAGAAAAGCGCTGTAT
TTACTATTTTTACAAGAATGaaacttcaatcttagatcagcAATagtgtg
aaaaatattttcaaaaatttcaatccAATCAAATGATATAAAAGAAAGTT
TGTCTCTGCTCGACcacaaaaaacagcaaaaaacactTATTTTAGGGGTC
AATCAGTTGAACACTTTGTTTAATATATTTTGAGggaattaatatttttt
taaagatcttttCATCGTTATTTCCTAAAATCAATTTCTTCGCCTTGCGA
CACCATATCTTTAATCATTTATGTTTATCTGTTTAGGACTTTATCATCAT
CAGGTGATAGGAACGTCTCCATACCTTTGAGAATGTTGGAAGTGTTCACC
AGCTTAAAAACATATGAATGGCTACCTTCAGAAGAAAACCAAATGAAAAC
TGTCTTCTCCATCACATCTCATCTTACAACCAAAGGTATAAACCAGCATA
ACCTGTCAACCCGGTCAATTTTTTGGGGAACTGGTAATGAATTTATAAGG
AACATTTGTTCCTGGCGAACAGTATTTTTAGGCTGCCTTTTAAACAAACC
AAACTAATTCACGTCAAAACTTTGAAGACACTTTCCCATGCCTCTGTGGT
GGAGTGCAAACCTTTTTAGCTTTTAtagtagttttttttttgtattcgaa
tatttctactCAATAGTGTTACTTTATCACTTCAATTCATAAAGGTATCT
TACATTTTTCACAAGAGCGATTGTATACTTGTGTTTTCAATACCGTCTTC
GAATGAAATTTTCCATGTAACTTCATTACCAGTCTCCTCAAAAGCTGACC
GGGTCGCTAAGGGTTAAATAGTTGTATTCAACCCAATACACCCagttttg
agaacattttaaatttgtcgttgttgaaaaattacaaaaagttctgaaaa
gtattcaaaaaatgatgaaaatcactgattttacTACCATAATATTCCAa
aaactttctcaaattttcaagttgtactaaaaggattttaaatattttgg
gtATGCCACCACCTCACTAAACAATTGATGCAATTGATTATGCAATTAAA
CAAGatgcaatttttactttttcaggtTATTTCAGTCAAATGAGGCAACT
TCTGATCACACGAGTACCAGATAGCCTGGAGCCGTCATCTCATCCACCAA
CACCACTAGCCGGTGCTATCAAAGACCTCATTATGAAACCATTGGAATTA
GTAATGGGAGACAGCCCATTATCGG

Coding sequence (CDS) from alignment at scaffold_358:132435..137559+

>TCONS_00061378 ID=TCONS_00061378|Name=TCONS_00061378|organism=Clytia hemisphaerica|type=CDS|length=5502bp|location=Sequence derived from alignment at scaffold_358:132435..137559+ (Clytia hemisphaerica)
AGAATTGAAATTAAACAAATACAAAGTAGTGAAAATAAAAGTATAAACAA
TATGTATAGTTTTGATGGCAAACATAAATCAAGAACAAAAGTCTCTCTTG
GTGGCGCATCTAAACAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAAGA
GAAGAAAGATTGAAAAGAGAGCTATCCAGGAAGCAAAATGAAGCAGCGAT
CAAGATTCAAGGGTGGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGagCA
ACAATTTTCGTGACAGTTTCGATAAAGCGTTAGAAAATAATGCTGATCTC
ACTGGTATCACCATTGCATCAAAACTGATTTATTTCTTCTATAACACTGA
ATTGGATTATCAAAGACTGgtACTTTTATCACAAAAGCTGTTGAAATTGG
CTTCAAGTAAACAGATTCAAACGTTGTTTTCAAGCAATTCTGACGAATGG
TTTCACCGTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGACTTTATCATC
ATCAGGTGATAGGAACGTCTCCATACCTTTGAGAATGTTGGAAGTGTTCA
CCAGCTTAAAAACATATGAATGGCTACCTTCAGAAGAAAACCAAATGAAA
ACTGTCTTCTCCATCACATCTCATCTTACAACCAAAGgtTATTTCAGTCA
AATGAGGCAACTTCTGATCACACGAGTACCAGATAGCCTGGAGCCGTCAT
CTCATCCACCAACACCACTAGCCGGTGCTATCAAAGACCTCATTATGAAA
CCATTGGAATTAGTAATGGGAGACAGCCCATTATCGAGAATTGAAATTAA
ACAAATACAAAGTAGTGAAAATAAAAGTATAAACAATATGTATAGTTTTG
ATGGCAAACATAAATCAAGAACAAAAGTCTCTCTTGGTGGCGCATCTAAA
CAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAAGAGAAGAAAGATTGAA
AAGAGAGCTATCCAGGAAGCAAAATGAAGCAGCGATCAAGATTCAAGGGT
GGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGagCAACAATTTTCGTGAC
AGTTTCGATAAAGCGTTAGAAAATAATGCTGATCTCACTGGTATCACCAT
TGCATCAAAACTGATTTATTTCTTCTATAACACTGAATTGGATTATCAAA
GACTGgtACTTTTATCACAAAAGCTGTTGAAATTGGCTTCAAGTAAACAG
ATTCAAACGTTGTTTTCAAGCAATTCTGACGAATGGTTTCACCGTTTGAA
ACGTGTTCTAGTTGTCTGCTCAAGGACTTTATCATCATCAGGTGATAGGA
ACGTCTCCATACCTTTGAGAATGTTGGAAGTGTTCACCAGCTTAAAAACA
TATGAATGGCTACCTTCAGAAGAAAACCAAATGAAAACTGTCTTCTCCAT
CACATCTCATCTTACAACCAAAGgtTATTTCAGTCAAATGAGGCAACTTC
TGATCACACGAGTACCAGATAGCCTGGAGCCGTCATCTCATCCACCAACA
CCACTAGCCGGTGCTATCAAAGACCTCATTATGAAACCATTGGAATTAGT
AATGGGAGACAGCCCATTATCGAGAATTGAAATTAAACAAATACAAAGTA
GTGAAAATAAAAGTATAAACAATATGTATAGTTTTGATGGCAAACATAAA
TCAAGAACAAAAGTCTCTCTTGGTGGCGCATCTAAACAGGTTGGAAAAAA
AGCTCTTATCGAATCTGCAAGAGAAGAAAGATTGAAAAGAGAGCTATCCA
GGAAGCAAAATGAAGCAGCGATCAAGATTCAAGGGTGGACTAGAAGCTGT
TTCGTTCAAAAGAGTTTGagCAACAATTTTCGTGACAGTTTCGATAAAGC
GTTAGAAAATAATGCTGATCTCACTGGTATCACCATTGCATCAAAACTGA
TTTATTTCTTCTATAACACTGAATTGGATTATCAAAGACTGgtACTTTTA
TCACAAAAGCTGTTGAAATTGGCTTCAAGTAAACAGATTCAAACGTTGTT
TTCAAGCAATTCTGACGAATGGTTTCACCGTTTGAAACGTGTTCTAGTTG
TCTGCTCAAGGACTTTATCATCATCAGGTGATAGGAACGTCTCCATACCT
TTGAGAATGTTGGAAGTGTTCACCAGCTTAAAAACATATGAATGGCTACC
TTCAGAAGAAAACCAAATGAAAACTGTCTTCTCCATCACATCTCATCTTA
CAACCAAAGgtTATTTCAGTCAAATGAGGCAACTTCTGATCACACGAGTA
CCAGATAGCCTGGAGCCGTCATCTCATCCACCAACACCACTAGCCGGTGC
TATCAAAGACCTCATTATGAAACCATTGGAATTAGTAATGGGAGACAGCC
CATTATCGAGAATTGAAATTAAACAAATACAAAGTAGTGAAAATAAAAGT
ATAAACAATATGTATAGTTTTGATGGCAAACATAAATCAAGAACAAAAGT
CTCTCTTGGTGGCGCATCTAAACAGGTTGGAAAAAAAGCTCTTATCGAAT
CTGCAAGAGAAGAAAGATTGAAAAGAGAGCTATCCAGGAAGCAAAATGAA
GCAGCGATCAAGATTCAAGGGTGGACTAGAAGCTGTTTCGTTCAAAAGAG
TTTGagCAACAATTTTCGTGACAGTTTCGATAAAGCGTTAGAAAATAATG
CTGATCTCACTGGTATCACCATTGCATCAAAACTGATTTATTTCTTCTAT
AACACTGAATTGGATTATCAAAGACTGgtACTTTTATCACAAAAGCTGTT
GAAATTGGCTTCAAGTAAACAGATTCAAACGTTGTTTTCAAGCAATTCTG
ACGAATGGTTTCACCGTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGACT
TTATCATCATCAGGTGATAGGAACGTCTCCATACCTTTGAGAATGTTGGA
AGTGTTCACCAGCTTAAAAACATATGAATGGCTACCTTCAGAAGAAAACC
AAATGAAAACTGTCTTCTCCATCACATCTCATCTTACAACCAAAGgtTAT
TTCAGTCAAATGAGGCAACTTCTGATCACACGAGTACCAGATAGCCTGGA
GCCGTCATCTCATCCACCAACACCACTAGCCGGTGCTATCAAAGACCTCA
TTATGAAACCATTGGAATTAGTAATGGGAGACAGCCCATTATCGAGAATT
GAAATTAAACAAATACAAAGTAGTGAAAATAAAAGTATAAACAATATGTA
TAGTTTTGATGGCAAACATAAATCAAGAACAAAAGTCTCTCTTGGTGGCG
CATCTAAACAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAAGAGAAGAA
AGATTGAAAAGAGAGCTATCCAGGAAGCAAAATGAAGCAGCGATCAAGAT
TCAAGGGTGGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGagCAACAATT
TTCGTGACAGTTTCGATAAAGCGTTAGAAAATAATGCTGATCTCACTGGT
ATCACCATTGCATCAAAACTGATTTATTTCTTCTATAACACTGAATTGGA
TTATCAAAGACTGgtACTTTTATCACAAAAGCTGTTGAAATTGGCTTCAA
GTAAACAGATTCAAACGTTGTTTTCAAGCAATTCTGACGAATGGTTTCAC
CGTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGACTTTATCATCATCAGG
TGATAGGAACGTCTCCATACCTTTGAGAATGTTGGAAGTGTTCACCAGCT
TAAAAACATATGAATGGCTACCTTCAGAAGAAAACCAAATGAAAACTGTC
TTCTCCATCACATCTCATCTTACAACCAAAGgtTATTTCAGTCAAATGAG
GCAACTTCTGATCACACGAGTACCAGATAGCCTGGAGCCGTCATCTCATC
CACCAACACCACTAGCCGGTGCTATCAAAGACCTCATTATGAAACCATTG
GAATTAGTAATGGGAGACAGCCCATTATCGAGAATTGAAATTAAACAAAT
ACAAAGTAGTGAAAATAAAAGTATAAACAATATGTATAGTTTTGATGGCA
AACATAAATCAAGAACAAAAGTCTCTCTTGGTGGCGCATCTAAACAGGTT
GGAAAAAAAGCTCTTATCGAATCTGCAAGAGAAGAAAGATTGAAAAGAGA
GCTATCCAGGAAGCAAAATGAAGCAGCGATCAAGATTCAAGGGTGGACTA
GAAGCTGTTTCGTTCAAAAGAGTTTGagCAACAATTTTCGTGACAGTTTC
GATAAAGCGTTAGAAAATAATGCTGATCTCACTGGTATCACCATTGCATC
AAAACTGATTTATTTCTTCTATAACACTGAATTGGATTATCAAAGACTGg
tACTTTTATCACAAAAGCTGTTGAAATTGGCTTCAAGTAAACAGATTCAA
ACGTTGTTTTCAAGCAATTCTGACGAATGGTTTCACCGTTTGAAACGTGT
TCTAGTTGTCTGCTCAAGGACTTTATCATCATCAGGTGATAGGAACGTCT
CCATACCTTTGAGAATGTTGGAAGTGTTCACCAGCTTAAAAACATATGAA
TGGCTACCTTCAGAAGAAAACCAAATGAAAACTGTCTTCTCCATCACATC
TCATCTTACAACCAAAGgtTATTTCAGTCAAATGAGGCAACTTCTGATCA
CACGAGTACCAGATAGCCTGGAGCCGTCATCTCATCCACCAACACCACTA
GCCGGTGCTATCAAAGACCTCATTATGAAACCATTGGAATTAGTAATGGG
AGACAGCCCATTATCGAGAATTGAAATTAAACAAATACAAAGTAGTGAAA
ATAAAAGTATAAACAATATGTATAGTTTTGATGGCAAACATAAATCAAGA
ACAAAAGTCTCTCTTGGTGGCGCATCTAAACAGGTTGGAAAAAAAGCTCT
TATCGAATCTGCAAGAGAAGAAAGATTGAAAAGAGAGCTATCCAGGAAGC
AAAATGAAGCAGCGATCAAGATTCAAGGGTGGACTAGAAGCTGTTTCGTT
CAAAAGAGTTTGagCAACAATTTTCGTGACAGTTTCGATAAAGCGTTAGA
AAATAATGCTGATCTCACTGGTATCACCATTGCATCAAAACTGATTTATT
TCTTCTATAACACTGAATTGGATTATCAAAGACTGgtACTTTTATCACAA
AAGCTGTTGAAATTGGCTTCAAGTAAACAGATTCAAACGTTGTTTTCAAG
CAATTCTGACGAATGGTTTCACCGTTTGAAACGTGTTCTAGTTGTCTGCT
CAAGGACTTTATCATCATCAGGTGATAGGAACGTCTCCATACCTTTGAGA
ATGTTGGAAGTGTTCACCAGCTTAAAAACATATGAATGGCTACCTTCAGA
AGAAAACCAAATGAAAACTGTCTTCTCCATCACATCTCATCTTACAACCA
AAGgtTATTTCAGTCAAATGAGGCAACTTCTGATCACACGAGTACCAGAT
AGCCTGGAGCCGTCATCTCATCCACCAACACCACTAGCCGGTGCTATCAA
AGACCTCATTATGAAACCATTGGAATTAGTAATGGGAGACAGCCCATTAT
CG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038513	XLOC_038513	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00061378-protein	TCONS_00061378-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_358	supercontig	scaffold_358:132435..137559 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.93609	2.55948	2.0258	1.43986	9.49625	8.40531	7.07776	7.34896	5.40541	6.8552	5.55268	3.99231	6.71241	4.19598	5.03636	5.01904	5.22224	4.37037	3.79304	4.17327	4.35494	5.71171	3.73383	3.48909	9.39137	11.8397	3.35497	2.36314	3.14244	3.32023

Blast

[Close]

BLAST of TCONS_00061378 vs. Swiss-Prot (Human)
Match: UBE3C (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 9.053e-18
Identity = 76/254 (29.92%), Postives = 133/254 (52.36%), Query Frame = 3

Query:   54 MYSFDGKHKSRTKVSLGGASKQVGKKALIXXXXXXXXXXXXXXXQNEAAIKIQGWTRSCFVQKSLSNNFRDSFDKALENN--------ADLTGITIASKLIYFFYNTELDYXXXXXXXXXXXXXXXXXXIQTLFSSNSDEWFHRLKRVLVVCSRTLSSSGDR--NVSIPLRMLEVFTSLKTYEWLPSEENQMKTVFS-ITSHLTTKGYFSQMRQLLITRVPDSLEPSSHPPTPLAGAIKDLIMKPLELVMGDSP 782
            M+SF+G  K+R KVSLGGAS++  K +L+   +EER KRE  R++ + AI IQ + R    +K   +  R +FD+    +        A+   +T+  + + FFY    D  + ++   + L   SS  ++ L  S       ++KR++ +C R L +  D   NV++P+RMLEVF+S  TY  +  + + + +V   I  ++   GY+  +  L+ +++P S+E S     P+A  + + ++KPL       P
Sbjct:    1 MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFIRGYRDRKQQYSIQRSAFDRCATLSQSGGAFPIANGPNLTLLVRQLLFFYKQNED-SKRLIWLYQNLIKHSSLFVKQLDGSERLTCLFQIKRLMSLCCRLLQNCNDDSLNVALPMRMLEVFSSENTYLPVLQDASYVVSVIEQILHYMIHNGYYRSLYLLINSKLPSSIEYSDLSRVPIAKILLENVLKPLHFTYNSCP 253

The following BLAST results are available for this feature:

BLAST of TCONS_00061378 vs. Swiss-Prot (Human)

BLAST of TCONS_00061378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBE3C	9.053e-18	29.92	Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB...	[more]

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TCONS_00061378 (transcript) - C. hemisphaerica