TCONS_00061377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061377
Unique NameTCONS_00061377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061377 ID=TCONS_00061377|Name=TCONS_00061377|organism=Clytia hemisphaerica|type=transcript|length=789bp
TTAGAATTGAAATTAAACAAATACAAAGTAGTGAAAATAAAAGTATAAAC
AATATGTATAGTTTTGATGGCAAACATAAATCAAGAACAAAAGTCTCTCT
TGGTGGCGCATCTAAACAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAA
GAGAAGAAAGATTGAAAAGAGAGCTATCCAGGAAGCAAAATGAAGCAGCG
ATCAAGATTCAAGGGTGGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGag
TAACAATTTTCGTGACAGTTTCGATAAAGCGTTAGAAAATAATGCTGATC
TCACTGGTATCACCATTGCATCAAAGCTGATTTATTTCTTCTATAACACT
GAATTGGATTATCAAAGACTGgtACTTTTATCACAAAAGCTGTTGAAATT
GGCTTCAAGTAAACAGATTCAAACGTTGTTTTCAAGCAATTCTGACGAAT
GGTTTCACCGTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGACTTTATCA
TCATCAGGTGATAGGAACGTCTCCATACCTTTGAGAATGTTGGAAGTGTT
CACCAGCTTAAAAACATATGAATGGCTACCTTCAGAAGAAAACCAAATGA
AAACTGTCTTCTCCATCACATCTCATCTTACAACCAAAGgtTATTTCAGT
CAAATGAGGCAACTTCTGATCACACGAGTACCAGATAGCCTGGAGCCGTC
ATCTCATCCACCAACACCACTAGCCGGTGCTATCAAAGACCTCATTATGA
AACCATTGGAATTAGTAATGGGAGACAGCCCATTATCGG
Run BLAST on NCBI

transcript from alignment at scaffold_358:132435..137559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061377 ID=TCONS_00061377|Name=TCONS_00061377|organism=Clytia hemisphaerica|type=transcript|length=5125bp|location=Sequence derived from alignment at scaffold_358:132435..137559+ (Clytia hemisphaerica)
TTAGAATTGAAATTAAACAAATACAAAGTAGTGAAAATAAAAGTATAAAC
AATATGTATAGTTTTGATGGCAAACATAAATCAAGAACAAAAGTCTCTCT
TGGTGGCGCATCTAAACAGGTATAAGGGTTTTGCTTCATTCTATTTAATT
TCGAATCAAAATGAATGAAACAACATAgtgatttgaaaaaatatcagaat
attttctttgaaataccAGATACCCAATAATTTTACCATCATATCAGAAG
CCTCCTCAAACGCTTAGTCTGGTGgtaaaaatgaactttttttgCAATAA
CCTTTAACATCTTATCAATAAGGGAAATTGGAAATTTCCCCAGCTGTCTC
GCAGTAAGAAAAAGTCAATCAAGATTAGAAACTTAAtcgtcttttttctt
ttttctatgtTATTTTTAGGTTGGAAAAAAAGCTCTTATCGAATCTGCAA
GAGAAGAAAGATTGAAAAGAGAGGTATGAGAGACaccactttatattttt
ttggaaagtatACATTTTATAATTTTGGACTGTTTTTGATACAACCACAT
GACTTTGTATTTACTCTATATCTATAATATCTAATCTATCCTTGCAATGT
CATCAGTAACATGAGTACACAGGGGTACACACTTTTGTTTAAATTGTTCG
CTGGGTCACATTGTTCAAGACCCTTCAACTCTCATTCCCATCCTATTCCT
CCTAAGCTTGCTCATGTCACCCAAAACTCCTTAAAGTATTTGAGGCATTA
AAAGGTTTGATAATTATTGTATGTTAAAATTTACGATTCCACCAAGTTTG
TCAATTAGGGATTTCTTGAAGCCTTATTTTAAAAATGTGCCTCTGTTTAT
CCCCCTAAAGCTATCCAGGAAGCAAAATGAAGCAGCGATCAAGATTCAAG
GGTGGACTAGAAGCTGTTTCGTTCAAAAGAGTTTGGTATGTGGAATATTT
TTCttctcttataaataaatattatatcataagtttattttatattgtaT
TTTGTCAATATCTCTTGTCAATAGCACTCTTTAAGTTCGTATTAGATGTT
TAGGCTATTTTATAGGGAATGAAAAAAATGGCAGTGAATTAGGATgttgg
agcaagattttttgatttctaaGAGTGACAAGTTATGTTAAAACCTTTTT
GTCCTCAACTTTAAAATTTCTATGGATTATTTAGATGGTATTTGAATTGA
TTATTTagaattgtttaaaatttttgtttacttcagagTAACAATTTTCG
TGACAGTTTCGATAAAGCGTTAGAAAATAATGCTGATCTCACTGGTATCA
CCATTGCATCAAAGCTGATTTATTTCTTCTATAACACTGAATTGGATTAT
CAAAGACTGGTATAATGACTTTAATTattgttttcactttcatttttttc
tccagttgTGGACCTTATCattaagctctagtttagacggctgaCTTTCT
GcactgcctattctaattgttagagtaggcaaaaaGAGGGAACAAAGTTg
gtttttaaaatctttgcttggaaaggtttgaaagaagacattgcattgac
gtcaaacaAGGGCTATGCATCGACTTTAGACAGCGAACTAACTGCcctct
ttaattcacaattagaataggcagggcaaaaagtgggccgtctaaactag
agctaaggcATCCAACATTCAGGAATGACATTTTGATGGAATCGTTCTCA
AGTGTCGTTTGTCAGCTGTatgcactgacctttatataccctggacacaG
TTTCTTGATCCCGGTCAAGCAAAATTCtttgattgcaattttttttagaC
CTAAGTAGTATCATAATTAGTACcttaatggtagcactactaaGTGTCCA
AACTCAATGAAATGCAAATTAACCTACTTTGAGTACCACTACAACTTTAT
AAAAACTCTGATAGCCGATATAGCTTGGGCCAGGGTATATGAAAGTCAGT
GGCTGTATGTTTTGCTGCACGACCAAGGTCTTTTTTGAAGGCTTCTCCAA
GGTGTTCTTTTACGTTTGCCTTTACTACCTTTGTAGATGCCAAAAAAGCT
TTATTCTGGTATGAAGCAGTCCTTTCTTAACTCATAAAGTGTGGTCTGTT
TGTATTCTCAACGCTCTCCTTTGTTTATTTAGTGTGGTTATGCAAGGGGA
AATCCCCTGAAATCCTCTCTAGATCTTGAACAGACCCGTATTTGCTTGTT
NTGGATTATTTAGATGGTATTTGAATTGATTATTTagaattgtttaaaat
ttttgtttacttcagagCAACAATTTTCGTGACAGTTTCGATAAAGCGTT
AGAAAATAATGCTGATCTCACTGGTATCACCATTGCATCAAAACTGATTT
ATTTCTTCTATAACACTGAATTGGATTATCAAAGACTGGTATAATGACTT
TAATTattgttttcactttcatttttttctccagtaGTGGACCTTATCat
taagctctagtttagacggccgactttctgcactgcctattctaattgtt
agagtaggcaaaaagagggcacaaagttggttgttaaaatctttgcttgg
aataGCTAAGGCATCCAACATTCAGGAGTGACATTTTGATGGAATCGTTC
TCAAGTGTCGTTTGTCAGCTGTatgcactgacctttatataccctggaca
caGTTTCTTGATCCCGGTCAAGCAAAATTCtttgattgcaatttttttta
gaCCTAAGTAGTATCATAATTAGTACcttaatggtagcactactaaGTGT
CCAAACTCAATGAAATGCAAATTAACCTACTTTGAGTACCACTACAACTT
TATAAAAACTCTGATAGCCGATATAGCTTGGGCCAGGGTATATGAAAGTC
AGTGGCTGTATGTTTTGCTGCACGACCAAGGTCTTTTTTGAAGGCTTCTC
CAAGGTGTTCTTTTACGTTTGCCTTTACTACCTTTGTAGATGCCAAAAAA
GCTTTATTCTGGTATGAAGCAGTCCTTTCTTAACTCATAAAGTGTGGTCT
GTTTGTATTCTCAACGCTCTCCTTTGTTTATTTAGTGTGGTTATGCAAGG
GGAAATCCCCTGAAATCCTCTCTAGATCTTGAACAGACCCGTATTTGCTT
GTTATAATCAAAGGCAACTGTTATCCATCGTTGTTTTAGTGactcatttt
tttctctttcaggtACTTTTATCACAAAAGCTGTTGAAATTGGCTTCAAG
TAAACAGATTCAAACGTTGTTTTCAAGCAATTCTGACGAATGGTTTCACC
GTTTGAAACGTGTTCTAGTTGTCTGCTCAAGGTAGATATGGTTGTCATCA
CCAGTGATCTTTCTTATAGTGTACTATGCTTTCATATACCTTGGACCAAG
CTTTATGCATCATCTCAtgctaatggtagcactactcgatATGGGTCAAC
TTATAattccatgaaattttctgtttgatttttttttcatccatTGATGA
GTAGTGCTTCCATTAGGGTACAACTTTCAAAAGATTCTGATCAAAGACTT
TAATTTGGTAGGATCGAGAAACCTTGTCCAATGTATAAAAAGATCAGTGG
TTATCCTCCAAGCAACTGAAGCTGGGTGTCCACTGAAAAATAATAAGTTC
GTCGCAAATACCTGTTGATAAAAAGGTTTTTAATTCGACGAACAAATTCG
CGACGAACTTATTTTTTCCCAGTGGACACCCATctttataattttaaaaa
caaatgataaaaacTCTGGTAGCCAAATTCTGTGTCAAAAAGGTgtgcag
tgtttttatttttggccgaaactttcaaacatttttcaagttataaaaaa
gttggtatcgttggaaagatattttttttttaaaattcgttcaagaaagt
gaagaaaatgaagaagacaaaaatgaacttcttgTAGAAAAGCGCTGTAT
TTACTATTTTTACAAGAATGaaacttcaatcttagatcagcAATagtgtg
aaaaatattttcaaaaatttcaatccAATCAAATGATATAAAAGAAAGTT
TGTCTCTGCTCGACcacaaaaaacagcaaaaaacactTATTTTAGGGGTC
AATCAGTTGAACACTTTGTTTAATATATTTTGAGggaattaatatttttt
taaagatcttttCATCGTTATTTCCTAAAATCAATTTCTTCGCCTTGCGA
CACCATATCTTTAATCATTTATGTTTATCTGTTTAGGACTTTATCATCAT
CAGGTGATAGGAACGTCTCCATACCTTTGAGAATGTTGGAAGTGTTCACC
AGCTTAAAAACATATGAATGGCTACCTTCAGAAGAAAACCAAATGAAAAC
TGTCTTCTCCATCACATCTCATCTTACAACCAAAGGTATAAACCAGCATA
ACCTGTCAACCCGGTCAATTTTTTGGGGAACTGGTAATGAATTTATAAGG
AACATTTGTTCCTGGCGAACAGTATTTTTAGGCTGCCTTTTAAACAAACC
AAACTAATTCACGTCAAAACTTTGAAGACACTTTCCCATGCCTCTGTGGT
GGAGTGCAAACCTTTTTAGCTTTTAtagtagttttttttttgtattcgaa
tatttctactCAATAGTGTTACTTTATCACTTCAATTCATAAAGGTATCT
TACATTTTTCACAAGAGCGATTGTATACTTGTGTTTTCAATACCGTCTTC
GAATGAAATTTTCCATGTAACTTCATTACCAGTCTCCTCAAAAGCTGACC
GGGTCGCTAAGGGTTAAATAGTTGTATTCAACCCAATACACCCagttttg
agaacattttaaatttgtcgttgttgaaaaattacaaaaagttctgaaaa
gtattcaaaaaatgatgaaaatcactgattttacTACCATAATATTCCAa
aaactttctcaaattttcaagttgtactaaaaggattttaaatattttgg
gtATGCCACCACCTCACTAAACAATTGATGCAATTGATTATGCAATTAAA
CAAGatgcaatttttactttttcaggtTATTTCAGTCAAATGAGGCAACT
TCTGATCACACGAGTACCAGATAGCCTGGAGCCGTCATCTCATCCACCAA
CACCACTAGCCGGTGCTATCAAAGACCTCATTATGAAACCATTGGAATTA
GTAATGGGAGACAGCCCATTATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038513XLOC_038513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061377-exon-scaffold_358-1491911889:132435..132553TCONS_00061377-exon-scaffold_358-1491911889:132435..132553Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:132435..132553TCONS_00061377-exon-scaffold_358-1510915933:132435..132553Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:132435..132553TCONS_00061377-exon-scaffold_358-1575043694:132435..132553Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1491911889:132854..132907TCONS_00061377-exon-scaffold_358-1491911889:132854..132907Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:132854..132907TCONS_00061377-exon-scaffold_358-1510915933:132854..132907Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:132854..132907TCONS_00061377-exon-scaffold_358-1575043694:132854..132907Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1491911889:133295..133369TCONS_00061377-exon-scaffold_358-1491911889:133295..133369Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:133295..133369TCONS_00061377-exon-scaffold_358-1510915933:133295..133369Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:133295..133369TCONS_00061377-exon-scaffold_358-1575043694:133295..133369Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1491911889:133671..133793TCONS_00061377-exon-scaffold_358-1491911889:133671..133793Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:133671..133793TCONS_00061377-exon-scaffold_358-1510915933:133671..133793Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:133671..133793TCONS_00061377-exon-scaffold_358-1575043694:133671..133793Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1491911889:135597..135715TCONS_00061377-exon-scaffold_358-1491911889:135597..135715Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:135597..135715TCONS_00061377-exon-scaffold_358-1510915933:135597..135715Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:135597..135715TCONS_00061377-exon-scaffold_358-1575043694:135597..135715Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1491911889:136621..136769TCONS_00061377-exon-scaffold_358-1491911889:136621..136769Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:136621..136769TCONS_00061377-exon-scaffold_358-1510915933:136621..136769Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:136621..136769TCONS_00061377-exon-scaffold_358-1575043694:136621..136769Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1491911889:137410..137559TCONS_00061377-exon-scaffold_358-1491911889:137410..137559Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1510915933:137410..137559TCONS_00061377-exon-scaffold_358-1510915933:137410..137559Clytia hemisphaericaexon
TCONS_00061377-exon-scaffold_358-1575043694:137410..137559TCONS_00061377-exon-scaffold_358-1575043694:137410..137559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:132435..137559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.734022	0.959806	0.675267	0.863918	1.30983	0.720455	2.35925	1.6331	0.831601	0.806494	1.38817	0.570331	0	0.662524	1.00727	2.17492	1.1605	2.68946	0.758607	2.08663	2.03231	2.85585	2.29774	3.77984	0	0	0	0.590784	1.7458	2.21349
Blast
[Close]
BLAST of TCONS_00061377 vs. Swiss-Prot (Human)
Match: UBE3C (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 9.053e-18
Identity = 76/254 (29.92%), Postives = 133/254 (52.36%), Query Frame = 3 
Query:   54 MYSFDGKHKSRTKVSLGGASKQVGKKALIXXXXXXXXXXXXXXXQNEAAIKIQGWTRSCFVQKSLSNNFRDSFDKALENN--------ADLTGITIASKLIYFFYNTELDYXXXXXXXXXXXXXXXXXXIQTLFSSNSDEWFHRLKRVLVVCSRTLSSSGDR--NVSIPLRMLEVFTSLKTYEWLPSEENQMKTVFS-ITSHLTTKGYFSQMRQLLITRVPDSLEPSSHPPTPLAGAIKDLIMKPLELVMGDSP 782
            M+SF+G  K+R KVSLGGAS++  K +L+   +EER KRE  R++ + AI IQ + R    +K   +  R +FD+    +        A+   +T+  + + FFY    D  + ++   + L   SS  ++ L  S       ++KR++ +C R L +  D   NV++P+RMLEVF+S  TY  +  + + + +V   I  ++   GY+  +  L+ +++P S+E S     P+A  + + ++KPL       P
Sbjct:    1 MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFIRGYRDRKQQYSIQRSAFDRCATLSQSGGAFPIANGPNLTLLVRQLLFFYKQNED-SKRLIWLYQNLIKHSSLFVKQLDGSERLTCLFQIKRLMSLCCRLLQNCNDDSLNVALPMRMLEVFSSENTYLPVLQDASYVVSVIEQILHYMIHNGYYRSLYLLINSKLPSSIEYSDLSRVPIAKILLENVLKPLHFTYNSCP 253
The following BLAST results are available for this feature:
BLAST of TCONS_00061377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBE3C9.053e-1829.92Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
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