TCONS_00061376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061376
Unique NameTCONS_00061376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061376 ID=TCONS_00061376|Name=TCONS_00061376|organism=Clytia hemisphaerica|type=transcript|length=817bp
CAAACCGTAACATCTGAACATGGTCTTTGTATTGTGTTTTTGTATACATT
GTTGTACTAATTTTTATACCACAATaaataggaatgaaaataagaatttt
caaGAAATGGCTTGCAAGTATTAAAAGCTACAGCTATCGATCAACACCTT
GGCTCTTACTTACTTGGAAGAAGAGggACAATCTATTACCCAATGGAGCC
AATTTTCTTTCAATCCATCAAAAATCCTTACATATTGAAATGTGTTGATG
GCATAATGGTTGATGGAAACCATCAGGGAATAAGCAAAAAGGTTTTCAGG
TCATGCTCGCTGAGGGATCATTTAGGAGTGTATCCATCATGTGACACTTC
ATGGCTTAATGCAAGAGAAAAACAAACCATTAATCCACTTGCAATCGGTC
AAATAGTCAATAATGCACCAATAAAGAATAGAGCCAACGTTGTTTACCAG
GAACTAGATATTCCATACACATTTCCAACAAATCTTCGTCAATATTTACC
CAATGTTCGATTCAAACCTATGGATATTGAGTATCTTCAATATGTGGACG
AAAAAGAGCTTGAAAGTCTTCCATACATCAGAGTGATTGTTTTGGTTGCT
TTGAGAGATATTCATGCTGGAGAAGAATTATTTTCATCATATTTCACAGA
GGTTGAATATGATTAGAAAGGATAATGTTGATAAAGATTAGCTTTATTTA
TGTTAGGGTAGATCGCCAACTACTATTTTtagcatgatgtcaaaaaattc
aaagtgtagtatttttttgtcaaaattttatctattataagacattttgc
gcaatttttaacctcct
Run BLAST on NCBI

transcript from alignment at scaffold_358:127326..129552+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061376 ID=TCONS_00061376|Name=TCONS_00061376|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at scaffold_358:127326..129552+ (Clytia hemisphaerica)
CAAACCGTAACATCTGAACATGGTCTTTGTATTGTGTTTTTGTATACATT
GTTGTACTAATTTTTATACCACAATaaataggaatgaaaataagaatttt
caaGAAATGGCTTGCAAGTATTAAAAGCTACAGCTATCGATCAACACCTT
GGCTCTTACTTACTTGGAAGAAGAGGTTGGTCAATAATATTATTTCAACC
CAATATTGCAATAATTCAAGATTATTATACTTTTTAGCGTTAATCTAAGA
TGTTATGAGATCCTTAAAATTAGACTATTATGgttcaaaatcaatttatt
tcTCAATATTTTAGAAGTATAAAACAAGTATCGAAAAGCGAAAACTCTTC
TTTTACTGAAAAAGAACCCTTGTTCTTATCACAACTCCAAGAACTTTTCC
TCAAgcttcaacaaaacaaaaatggaaagCTTACTCCAAGTCAAGTTATG
GAGCAAAGCTATGGATTTTCAATAGAGATACATCAAAGCACATTGCCAAA
CGCTGGATTAGGTGTTTATGTGAAATCGGGTACAGTACCAAAGTATGGAA
TCGCATCTATGTACCCAGGTATAAACCATACTTGGATAATACTTACTTAT
CACTTACACATCTTATTGCAATCTTAAAGTCATCACAATTTTAAATGCTG
GACCTTATAAAAtatcagatgagatggagtttttataacatacttttaat
tggtcatttgaagtaataaagatgacgcgttctttagaaaaagtaacaaa
atagtTTTATTACTGGtaaacgaccaaccaaatcaaataagagcttgtaa
aaactccatctcgtctcGAAAATATTGGCTGTCACCTGGCCGAACAATCT
CGAAACCAGCCGTGCCAAAAACTTTATTGttattttaaagaagaattttt
ttcttcaaatcaaaacTTCTATTATGTCTGTCTCTTTCTATGATAAACCT
AATAATCATGAATTCCCTTTTAGATCTTCGTTGTCATTTCAAAATTACCC
AAAATATAAACAGATTTGACCAATGTTCCTCCAAAATCTAGAGTCAGGTG
ACAGCTAACCAATATAGTTTTAAGTTCGGCCTAAATTATAGAGGCATTGT
TTCTCAATGACATGATAGATATAGTCACTGTTAGgctatattttattttg
aagggACAATCTATTACCCAATGGAGCCAATTTTCTTTCAATCCATCAAA
AATCCTTACATATTGAAATGTGTTGATGGCATAATGGTTGATGGAAACCA
TCAGGGAATAAGCAAAAAGGTTTTCAGGTAAATGGTAATATTCTTCTCTT
CAATGtttatagaaaaatataatagcAATTACCTTTGCGAAAAAGTGAGT
ATTTTTATTGACCAAGGATTTGTTGAATTCATTGGTTCTATtgtcaataa
tatttttgtattttctaaattcatttcaaaatttcaaaaagctaAAAGTA
GTATATTGATTTAAAGTTTCATACCTAACAGCAATTATAAGACGTACAAA
AACGATCATAGACGCAGGTTTGATGATAGGCATTAGGTATAAAAGTTGAA
GTAATAATGTGctactttttactttgaaattttgaagtaaATTTACTGCA
CAGTCTCAAATGACGTACAACAACAAAATggttttttaataattttttgt
gAGTAGGAATAAGCTGCTTCTGAATGAAATTCCAATCCCTTTCCTCTGGT
TTAATATAGGTCATGCTCGCTGAGGGATCATTTAGGAGTGTATCCATCAT
GTGACACTTCATGGCTTAATGCAAGAGAAAAACAAACCATTAATCCACTT
GCAATCGGTCAAATAGTCAATAATGCACCAATAAAGAATAGAGCCAACGT
TGTTTACCAGGAACTAGATATTCCATACACATTTCCAACAAATCTTCGTC
AATATTTACCCAATGTTCGATTCAAACCTATGGATATTGAGTATCTTCAA
TATGTGGACGAAAAAGAGCTTGAAAGTCTTCCATACATCAGAGTGATTGT
TTTGGTTGCTTTGAGAGATATTCATGCTGGAGAAGAATTATTTTCATCAT
ATTTCACAGAGGTTGAATATGATTAGAAAGGATAATGTTGATAAAGATTA
GCTTTATTTATGTTAGGGTAGATCGCCAACTACTATTTTtagcatgatgt
caaaaaattcaaagtgtagtatttttttgtcaaaattttatctattataa
gacattttgcgcaatttttaacctcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038512XLOC_038512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061376-exon-scaffold_358-1491911889:127326..127500TCONS_00061376-exon-scaffold_358-1491911889:127326..127500Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1510915933:127326..127500TCONS_00061376-exon-scaffold_358-1510915933:127326..127500Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1575043694:127326..127500TCONS_00061376-exon-scaffold_358-1575043694:127326..127500Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1491911889:128479..128602TCONS_00061376-exon-scaffold_358-1491911889:128479..128602Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1510915933:128479..128602TCONS_00061376-exon-scaffold_358-1510915933:128479..128602Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1575043694:128479..128602TCONS_00061376-exon-scaffold_358-1575043694:128479..128602Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1491911889:129035..129552TCONS_00061376-exon-scaffold_358-1491911889:129035..129552Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1510915933:129035..129552TCONS_00061376-exon-scaffold_358-1510915933:129035..129552Clytia hemisphaericaexon
TCONS_00061376-exon-scaffold_358-1575043694:129035..129552TCONS_00061376-exon-scaffold_358-1575043694:129035..129552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_358supercontigscaffold_358:127326..129552 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9553	14.128	24.3785	20.3883	10.4069	6.53849	5.16391	5.67485	4.6355	3.78776	2.33249	3.35476	3.7323	2.36336	3.3403	3.18527	6.91837	5.25341	1.95876	2.58047	6.04982	3.97577	9.43965	11.1947	4.76136	4.13757	2.45977	2.41782	4.98506	4.36885
Blast
[Close]
BLAST of TCONS_00061376 vs. Swiss-Prot (Human)
Match: SETD9 (SET domain-containing protein 9 OS=Homo sapiens GN=SETD9 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 4.372e-45
Identity = 80/160 (50.00%), Postives = 104/160 (65.00%), Query Frame = 1 
Query:  175 GTIYYPMEPIFFQSIKNPYILKCVDGIMVDGNHQGISKKVFRSCSLRDHLGVYPSCDTSWLNAREKQTINPLAIGQIVNNAPIKNRANVVYQELDIPYTFPTNLRQYLPNVRFKPMDIEYLQYVDEKELESLPYIRVIVLVALRDIHAGEELFSSYFTEV 654
            GT+Y   EPIFFQSI NP+I +C+DG+++DGN +GISK V+RSC+ RD LG     D++WL +   +  NPLA+GQ VNN      ANV YQE D+P  FP  L+QYLPN+ +         Y  +  L      R +VLVALRDI+ GEELFS+Y+T V
Sbjct:  156 GTVYQKYEPIFFQSIGNPFIFRCLDGVLIDGNDKGISKVVYRSCNGRDRLGPLKMSDSTWLTS---EIHNPLAVGQYVNNCSNDRAANVCYQEFDVPAVFPIELKQYLPNIAYS--------YDKQSPL------RCVVLVALRDINQGEELFSNYYTIV 298
The following BLAST results are available for this feature:
BLAST of TCONS_00061376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SETD94.372e-4550.00SET domain-containing protein 9 OS=Homo sapiens GN... [more]
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