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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061360 ID=TCONS_00061360|Name=TCONS_00061360|organism=Clytia hemisphaerica|type=transcript|length=1663bpRun BLAST on NCBI transcript from alignment at scaffold_357:32481..68325- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061360 ID=TCONS_00061360|Name=TCONS_00061360|organism=Clytia hemisphaerica|type=transcript|length=35845bp|location=Sequence derived from alignment at scaffold_357:32481..68325- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061360 vs. Swiss-Prot (Human)
Match: ATG4B (Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2) HSP 1 Score: 327.02 bits (837), Expect = 7.962e-106 Identity = 171/326 (52.45%), Postives = 221/326 (67.79%), Query Frame = 2
Query: 53 FEEMKEINEYVYNRLWFTYRRNFLPIGGTGPTSDAGWGCMLRCGQMMLGQALQCRHLGRDWSWERDKRNT-KYMQILREFLDKKDSLYSIHQIAQMGVGEGKSVGQWFGPNTIAQVIRKLVLFDDANDIAVHVAMDNTVVIEDLRKLCKSNMDTWGCYGECSSSHNETPPLPTPTKEGECCNVNKRRKTRFXXXXXNEKQSTASWXXXXXXXXXXXXXSETNPTYFTALKAMFTLKQNIGIIGGKPNHAHYFIGFNGDRLLYLDPHTTQPALQMERYNCIPDTSYHTE-APCFMNFSALDPSIALGFYCHTEEELNDWVSAVREVS 1024
F E EI V +RLWFTYR+NF IGGTGPTSD GWGCMLRCGQM+ QAL CRHLGRDW W + KR Y +L F+D+KDS YSIHQIAQMGVGEGKS+GQW+GPNT+AQV++KL +FD + +AVH+AMDNTVV+E++R+LC++++ G + S P + V R + WRPL+L IPLRLGL++ N Y LK F + Q++G+IGGKPN AHYFIG+ G+ L+YLDPHTTQPA++ IPD S+H + PC M+ + LDPSIA+GF+C TE++ NDW V+++S
Sbjct: 36 FTEKDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAE------VTNR---------------PSPWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLS 340 The following BLAST results are available for this feature:
BLAST of TCONS_00061360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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