TCONS_00061355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061355
Unique NameTCONS_00061355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061355 ID=TCONS_00061355|Name=TCONS_00061355|organism=Clytia hemisphaerica|type=transcript|length=850bp
ATTAACCAAATTTGCTTTTTAcaatactttaagtttcatgtttccaatcg
TCAGTTGTAAACTAAATGTTGAACAAAATTCTCTTCCTATTCATACANAG
ACCTGATAGTTATTAGGGCGGCATTACACAAAGTTACATTACAGTAATTA
TGATGGGTCAGCTTTTGTTGTTGACTTTTTGGGGGTACTACTAAGGGGTA
CACTCAGGTTCTGGCAAAAAAAGGAGGCTTGCAGGGCCGAGCCAATATTT
TGATGAATTATGTAATAAGTAAAATAagacaaattttgaccaaaatataG
GACAACAGGTCAAAATTTGTCTGAAAAGTAAGAAACTCGTACAAATTCAA
GTTTTATCAAGCCAATTTCCAGGAACTTCCTTTGCTTTATTTAAACACTT
TTTAATTATCATTCAACATGACATTGCATCAAGCACAAGGTCAATTTTAA
CAATcactttgaaaaagaaactttagcATACTTAACATCCTCTTTCTCTT
GGGGTGTACCATAAAATAAAATTCGATATTCATTATATTGTTTTGTGCGG
agttctcttttttttgataGCCTGTCTATTTCAAGTTGATATTGTGTATC
CACAGTTTCAGTAGTTGGATTGATCTTCTTGGATACTCCTCTTTTGCTCC
CTCTGTTACCTTCCATAACCCTAAGGGGTCCTCACGTTTTTCTTagaaaa
agagtaaaaaaactaaaattcgATGACTGAATGACAAACCCAACCAGTCC
TACATGTGTTACTGCAACTATAGCGCCATTATAGAAGCGGTTTCTAtgga
gaaaaattcgaatttaatttttgaatCGGCATCCGTAACCTTCGATTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_356:138048..138897

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061355 ID=TCONS_00061355|Name=TCONS_00061355|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_356:138048..138897 (Clytia hemisphaerica)
CCAAATCGAAGGTTACGGATGCCGattcaaaaattaaattcgaatttttc
tccaTAGAAACCGCTTCTATAATGGCGCTATAGTTGCAGTAACACATGTA
GGACTGGTTGGGTTTGTCATTCAGTCATcgaattttagtttttttactct
ttttctAAGAAAAACGTGAGGACCCCTTAGGGTTATGGAAGGTAACAGAG
GGAGCAAAAGAGGAGTATCCAAGAAGATCAATCCAACTACTGAAACTGTG
GATACACAATATCAACTTGAAATAGACAGGCtatcaaaaaaaagagaact
CCGCACAAAACAATATAATGAATATCGAATTTTATTTTATGGTACACCCC
AAGAGAAAGAGGATGTTAAGTATgctaaagtttctttttcaaagtgATTG
TTAAAATTGACCTTGTGCTTGATGCAATGTCATGTTGAATGATAATTAAA
AAGTGTTTAAATAAAGCAAAGGAAGTTCCTGGAAATTGGCTTGATAAAAC
TTGAATTTGTACGAGTTTCTTACTTTTCAGACAAATTTTGACCTGTTGTC
CtatattttggtcaaaatttgtctTATTTTACTTATTACATAATTCATCA
AAATATTGGCTCGGCCCTGCAAGCCTCCTTTTTTTGCCAGAACCTGAGTG
TACCCCTTAGTAGTACCCCCAAAAAGTCAACAACAAAAGCTGACCCATCA
TAATTACTGTAATGTAACTTTGTGTAATGCCGCCCTAATAACTATCAGGT
CTNTGTATGAATAGGAAGAGAATTTTGTTCAACATTTAGTTTACAACTGA
cgattggaaacatgaaacttaaagtattgTAAAAAGCAAATTTGGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038495XLOC_038495Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061355-exon-scaffold_356-1491911889:138048..138897TCONS_00061355-exon-scaffold_356-1491911889:138048..138897Clytia hemisphaericaexon
TCONS_00061355-exon-scaffold_356-1510915933:138048..138897TCONS_00061355-exon-scaffold_356-1510915933:138048..138897Clytia hemisphaericaexon
TCONS_00061355-exon-scaffold_356-1575043694:138048..138897TCONS_00061355-exon-scaffold_356-1575043694:138048..138897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_356supercontigscaffold_356:138048..138897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.82173	2.37479	10.0894	9.37955	96.5085	73.5492	24.2649	24.5817	11.0071	14.7895	11.6624	12.9383	0.515338	0.305819	0.188569	0.674544	0.789434	0.851731	0.413602	0.492538	1.54728	1.09179	1.14229	1.54985	4.15969	3.87153	2.12499	2.67282	0.552883	0.5633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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