TCONS_00061354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061354
Unique NameTCONS_00061354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061354 ID=TCONS_00061354|Name=TCONS_00061354|organism=Clytia hemisphaerica|type=transcript|length=415bp
TTGCCTCACTTCAACAGAGACATTCAAGGAGTCAACATCAATCAAATTAG
TCTCTTATCAATGCAAACTTAGTCACTTTTCATACACTTGGTGTTAGTCC
AACACACCCTGTGTACTGCTGCCTACACAGCTTTCACATTCAGGCCAGCT
GGtgagtttttctctttttgctttCCCTTCCTTTGTCTTTTGCTTTCTTA
CAGTGGCTATTAGGTTTAAGATACAATTTTCATTACTTATTTTTCTACTA
GCATTCAATTATACTTAGCTTACACATAGAACTTTGTCATTCAAACttca
attttactttattttcataTATACATTAGGACTtagtttttgttcaattt
tctatttcagtttgaacatattCAATGCACACTACAGTGTTAACCGTTAC
GAACACGGCTTCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_356:136453..136867

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061354 ID=TCONS_00061354|Name=TCONS_00061354|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_356:136453..136867 (Clytia hemisphaerica)
GCGGAAGCCGTGTTCGTAACGGTTAACACTGTAGTGTGCATTGaatatgt
tcaaactgaaatagaaaattgaacaaaaactaAGTCCTAATGTATAtatg
aaaataaagtaaaattgaaGTTTGAATGACAAAGTTCTATGTGTAAGCTA
AGTATAATTGAATGCTAGTAGAAAAATAAGTAATGAAAATTGTATCTTAA
ACCTAATAGCCACTGTAAGAAAGCAAAAGACAAAGGAAGGGaaagcaaaa
agagaaaaactcaCCAGCTGGCCTGAATGTGAAAGCTGTGTAGGCAGCAG
TACACAGGGTGTGTTGGACTAACACCAAGTGTATGAAAAGTGACTAAGTT
TGCATTGATAAGAGACTAATTTGATTGATGTTGACTCCTTGAATGTCTCT
GTTGAAGTGAGGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038494XLOC_038494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061354-exon-scaffold_356-1491911889:136453..136867TCONS_00061354-exon-scaffold_356-1491911889:136453..136867Clytia hemisphaericaexon
TCONS_00061354-exon-scaffold_356-1510915933:136453..136867TCONS_00061354-exon-scaffold_356-1510915933:136453..136867Clytia hemisphaericaexon
TCONS_00061354-exon-scaffold_356-1575043694:136453..136867TCONS_00061354-exon-scaffold_356-1575043694:136453..136867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_356supercontigscaffold_356:136453..136867 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20555	1.17561	0.389997	0.953879	0	0.734112	0.221419	1.45103	0.870769	1.43812	0.87242	0.917591	1.14539	1.54635	0.195587	0.524736	1.29286	0.132514	3.11229	2.10733	0.666056	0.243659	0.197466	0.359051	0	1.15518	1.4169	0.756079	0.764612	0.194755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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