TCONS_00061350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061350
Unique NameTCONS_00061350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061350 ID=TCONS_00061350|Name=TCONS_00061350|organism=Clytia hemisphaerica|type=transcript|length=731bp
CTATATTTGCGACATCTTTTTAGCAGTAAACTGTAAAACACTTGACTTAG
AAACCCGAGATTTTtatgagtaaaattttctttcagttcAAGAAACCAAC
TCAGTTCCCAGCCTCCTTTCCCCTTACGTTGATACCAAAAGTGTTTTAAA
GTCAAGACCTTAGAATTTAATTGGCTTAGTGGCCTGGAACCAAGTTAAGT
TTATAGGGgtaataaaaatttagaaatgttAGAACTTTATCAGCAACTAT
TCTTTTATATCATTTCAAAACGACGAAACAAATTGAAACAACTTCGTTTT
TGCCAACgGAAATATCAATAAAGATGAAATCGTTGGTTTTCTTATTCTTC
GTAGCATCCACACTAATCGCTACAACAACGGCTTTTGATTTCTTGGCAAA
TTGTTACTGGGGTCCAGGACTAACAGGGAAATGTCAACCGAAATGTGCGG
AAGATAGTTATTGTTCCATCGTATTGTGTTTGGGGAGTGAGAGTGAGGGG
AAACACGTATGCTCGTGCAGCAAATGTAATACGAATAACCATGGTCATAG
GACCAAGAAAGAAAGTTCGATTACAGATGCAAAGCGATTCCAAAAGATGG
CCCAATTTAtggatgaaatggaaaaattatGATTTGTAAAATTACTCTtg
tttatataaaaagaagatTGACGATCCACTAAAATTGGTTAAAAGTTTAT
TCCGAAGGTTTGAATTAACCACCTAATAATT
Run BLAST on NCBI

protein sequence of TCONS_00061350-protein

>TCONS_00061350-protein ID=TCONS_00061350-protein|Name=TCONS_00061350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MKSLVFLFFVASTLIATTTAFDFLANCYWGPGLTGKCQPKCAEDSYCSIV
LCLGSESEGKHVCSCSKCNTNNHGHRTKKESSITDAKRFQKMAQFMDEME
KL
Run BLAST on NCBI

transcript from alignment at scaffold_356:146530..150709-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061350 ID=TCONS_00061350|Name=TCONS_00061350|organism=Clytia hemisphaerica|type=transcript|length=4180bp|location=Sequence derived from alignment at scaffold_356:146530..150709- (Clytia hemisphaerica)
CTATATTTGCGACATCTTTTTAGCAGTAAACTGTAAAACACTTGACTTAG
AAACCCGAGATTTTTATGAGTAAAATTTTCTTTCAGTTCAAGAAACCAAC
TCAGTTCCCAGCCTCCTTTCCCCTTACGTTGATACCAAAAGTGTTTTAAA
GTCAAGACCTTAGAATTTAATTGGCTTAGTGGCCTGGAACCAAGTTAAGT
TTATAGGGGTAATAAAAATTTAGAAATGTTAGAACTTTATCAGCAACTAT
TCTTTTATATCATTTCAAAACGACGAAACAAATTGAAACAACTTCGTTTT
TGCCAACGGTAAGAAAAAAACATTTAATTCTAGTCTTTATAAAGCTGCGT
ATTTTCCTCTTCGTCTTAGATTATGTTCTATTAGGGGTAACTTTTAACCA
GATAGGGTTGTTCACTGAAAATTAACTTTGTAACTCATTTCACGAATCTT
GGAGTAATTTTTTATTGAATATACCCAATGGCCTCACTGCCACAATCTAG
GACAACCGATTTAAATCCCTACTCCTGCAAATGTTTCACTCTAGTCAAAC
ATTGCTGATACAGCTGATTGTTGACCCTTTGAAAGGCAATCGAAAGATTG
TCTTAAAATCTTGATCAAAGTTTTCGGTTCCTGGGTAATCCACGTAAAAT
AATGTAGACTAGAAAACTATTCTGTTAATTGATCGTGTCAGAGGGCTGGA
ACGTAAGTGCGGCGGGCGTTTACCAAAATAGGAGCTGCGTAAGAGAACGA
GAAAAAGTTGGTAGGAGAGTGCAAAATAAGCCGACAAATTACCTTCCTAC
GCTTACCTCGCTCCTACGCTCACTTTTCCAGCATGATATCGTTCCACTCT
AAATATAATGACTCTATTTATCTCTACAGGAAATATCAATAAAGATGAAA
TCGTTGGTTTTCTTATTCTTCGTAGCATCCACACTAATCGCTACAACAAC
GGCTTTTGATTTCTTGGCAAATTGTTACTGGGGTCCAGGACTAACAGGGA
AATGTCAACCGAAATGTGCGGAAGATAGTTATTGTTCCATCGTATTGTGT
TTGGGGAGTGAGAGTGAGGGGAAACACGTATGCTCGTGCAGCAAATGTAA
TACGAATAACCATGGTCATAGGAGTAAGTTTACTTTTAAATTCAAAAGTT
GCTCTCCCCTCTGGTTCAGCCCGGTGCCGTCTTCTGTTGAGAAACTTACC
TCTAAATATTAAAAGAAAACTCAACTTTTTTGAGATGAAAATCTCCACTC
ACGGTGAGAATCTGAGAACTTTTTCGGTTGCAGCTTTTCACCGTGAATTC
ACCTAAAGCGGCGAATTTTAAATTTTTCTTCTACGAAAAACGCATTTAAC
CTTTAAAATCGGTCGAAAATCTTTCGGTTTTAAAATTTTCGCGAGCATTA
CATTTTGCGAATTTTCTGAAAAACTTGCGAAACTTACAAAATATAATCCT
GGCGTAAATGGCGTAAACCTACATAAGATATCACGGTTTCAAAATAACAA
AACCCCATACATGTTTTTTTTTATAAGCAAGTGTATGCCCCTTGATCAGG
CTCGTGTATGCTTAAGTTCTCAAAGCATCCAGGCATAGTTTATGCTTATT
ATATGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAAAAAAACATGTACAATACTTAAGGCTTGG
GGACACGAGAAAATTTTTTTGCATTGGTGCAATGCAACATGCTCCATCCC
ACTAATCTGAAACGCTTTCTCGTGTCTCCACATCATTTTTCTTTTAATAA
CATTTGTCCTTCACTCACTTTTGTCCCAGGGACAAAATCAGCGTGTCTTT
TGGGTCTGTTGGAGTCTGTTTGGGTATTTCCTTCACTTTTTGTCCCACGA
AACAAAAAAAGAAACCATGAGACACGCACTTTTTTCTTGTGTTGTTGGGA
TGGAGCATGTTGCATTTCACCAACGCGAAAAAAAACTTCTCGTGTCCCCA
AGCCTTTACATCAACTATCATAAAATAAATAGACTTTGTACCATATTAGA
CTGTTTTTAAGCCTTTTCTAGACTTTCGAAAGATCTAGAGGTCGATTATG
CAATTTTTTGATTTCTTCATAAAGTCTGAGTTATTCCCGTAATTAATGGA
AATTTTCTTCTTTTTTATGCCTTAAGAATATAATTGTATTGATTTATAAA
GCGAGGGGGAAATTATGAATTTGAGGTCATGATAAGGTCAACCCAAGGGA
ACCCTTTGTGGAATTATTCCCACTGATTAGATTTGTAGACCCCTCACTTA
GCCATTATGTGGGAATGGTGTGAAGTGATCCTGATTCTGAAAGTTATTTG
AAAAGTACCGCAGTATATTGCGCAAGCTGGATACGTTTATCTTAACTCTT
TCAGTACTGCGCAGCGCTAAATTTCCTTCATTTATGAATGACTCTTTTGG
CAGCCGCCAAATTTGATTACACTCTGAAAAGATAAATCTTGGAAAGAGCT
TTCCAACGAACCCAAAAATGACTTACTTTGCTTCAGCCAAAGCCAAGAAA
ATTCCATTTGAACACGTTTCACAGAACTGGTGGAAAATTTGTTCAAGTTT
TCGTCCCTGGTGGGAATAAACCCTAAATTTTCAGCCCCACTAGAAGATTG
ACTTTGATTTCATGGAGCTTGGAGCAATATAATTTTTCTCTCAATTGGTA
TTTCGCCCGGGGGGGGGCAGTGGGTTTACCAACTGACGGTATGTGCGGCG
AAAAAATCAGCTTTTAAAATCGCACCCTTACAATGCAGAAATAAATCGGT
AAAATTTATACCCTTACAGTGCATTTTTTCAAATTTTAAACTCTATTTGA
GCAAAAAATCAAGATTTTCGGGCAAAAGTTTGTAATTTTTCTCTCTTAAT
CGCCGCACATACCCGTCGGTCAATTTTCCTGACTGCCCCCCCCCCCCGGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCC
CCCCCCCCGGCGGGGTTATTTTGATGGAAATTTTTACCCTCGGGGAGCTG
CAAGACGGATGTATTTGAATTTGACGTACATTGTTTTTTCCTAATTTTCA
GCCAAGAAAGAAAGTTCGATTACAGATGCAAAGCGATTCCAAAAGATGGC
CCAATTTATGGATGAAATGGAAAAATTATGATTTGTAAAATTACTCTTGT
TTATATAAAAAGAAGATTGACGATCCACTAAAATTGGTTAAAAGTTTATT
CCGAAGGTTTGAATTAACCACCTAATAATT

Coding sequence (CDS) from alignment at scaffold_356:146530..150709-

>TCONS_00061350 ID=TCONS_00061350|Name=TCONS_00061350|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_356:146530..150709- (Clytia hemisphaerica)
CCAAGAAAGAAAGTTCGATTACAGATGCAAAGCGATTCCAAAAGATGGCC
CAATTTATGGATGAAATGGAAAAATTATGAATGAAATCGTTGGTTTTCTT
ATTCTTCGTAGCATCCACACTAATCGCTACAACAACGGCTTTTGATTTCT
TGGCAAATTGTTACTGGGGTCCAGGACTAACAGGGAAATGTCAACCGAAA
TGTGCGGAAGATAGTTATTGTTCCATCGTATTGTGTTTGGGGAGTGAGAG
TGAGGGGAAACACGTATGCTCGTGCAGCAAATGTAATACGAATAACCATG
GTCATAGGACCAAGAAAGAAAGTTCGATTACAGATGCAAAGCGATTCCAA
AAGATGGCCCAATTTATGGATGAAATGGAAAAATTATGAATGAAATCGTT
GGTTTTCTTATTCTTCGTAGCATCCACACTAATCGCTACAACAACGGCTT
TTGATTTCTTGGCAAATTGTTACTGGGGTCCAGGACTAACAGGGAAATGT
CAACCGAAATGTGCGGAAGATAGTTATTGTTCCATCGTATTGTGTTTGGG
GAGTGAGAGTGAGGGGAAACACGTATGCTCGTGCAGCAAATGTAATACGA
ATAACCATGGTCATAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038490XLOC_038490Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061350-proteinTCONS_00061350-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061350-exon-scaffold_356-1575043694:150402..150709TCONS_00061350-exon-scaffold_356-1575043694:150402..150709Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1575043694:149587..149830TCONS_00061350-exon-scaffold_356-1575043694:149587..149830Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1575043694:146530..146708TCONS_00061350-exon-scaffold_356-1575043694:146530..146708Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1510915933:150402..150709TCONS_00061350-exon-scaffold_356-1510915933:150402..150709Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1510915933:149587..149830TCONS_00061350-exon-scaffold_356-1510915933:149587..149830Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1510915933:146530..146708TCONS_00061350-exon-scaffold_356-1510915933:146530..146708Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1491911889:150402..150709TCONS_00061350-exon-scaffold_356-1491911889:150402..150709Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1491911889:149587..149830TCONS_00061350-exon-scaffold_356-1491911889:149587..149830Clytia hemisphaericaexon
TCONS_00061350-exon-scaffold_356-1491911889:146530..146708TCONS_00061350-exon-scaffold_356-1491911889:146530..146708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_356supercontigscaffold_356:146530..150709 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.8267	1.02356	2.07956	2.67425	0.283099	0.43456	0	0.0818039	0	0	0	0.0699053	21.7443	23.7063	0.0596019	0.0828319	3.6713	3.23053	127.719	104.722	49.3176	43.2142	47.5119	75.0235	58.0971	60.2405	0	0	0.233003	0.35609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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