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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061344 ID=TCONS_00061344|Name=TCONS_00061344|organism=Clytia hemisphaerica|type=transcript|length=2191bp
GGATGAGTGGACGCCAGACAGCCTCTCTTGTGAAGACGCCAAACGAGTTC
TCCAGGGTGGCATGAACTTCCTTCCTCAAAAGCACAAGGAAGGCCTGAGA
GTCAATTATAATTCAGGATTTTTCATTACCACTAACGTATACCCAGACTT
TGGCAATGAAATTGACAATGACAATGAAGCGATTCGAAAGCGGCTTGACG
TGTTCCAGACATCTTCCCTTAAGCGAAAAGACCCTTCGGTCGAAGGCTGG
CTCCGTATCAACTGCATGGAGGTGTTCCATTACTTGGCCGAACAACTCAA
ACACGAACCAATCTTCGACACACCAACACACAGATGGAATGGTGCGGGTG
CTGCCAAAGGGATGGGAGCTGTCTTCAACGATTTTGATTTCAGTCCGATG
GATTTGATGTTGGCAGACGAAAACGCGGAGTTTTCTTTGAGCCAGACCCC
AAGCATCCCGTCCAACAATGTCCAGACAGCAGATGCAGACGTGCCATCAT
CGCCAAGCAACTCAAAAGACAGTGCAACAGTCGAAGCAATTGATCACGCG
ATCATGGAAGCAGACCGTGTTGAAGGCGTGTTATACGAAGATCTCTCTTG
GGACACGCCACTTTTCGACAACGCATCGGAAAAGTGTGACGAAGAGTACG
TGCAAAAGGTGGTCGAGCTTGCATCAAACAACGAAGGATGTTGGGACGCT
CTGCACATCTCTGACAAGGCAGTGTCAATGTTCCGGCGCCGAGCTCGCGT
GTTCTGGGATGGCCCTGACACAGTATACGATGCGTGGCTGGTACGCAAGG
GTTACGAACGACCATGGTTCGATTACCACCTCATGAATTGCTCGTTTCCA
AGCTTCGATCCTGAAGCCGAACAAGAGCCCTCAACGCCACAACAGCTCCA
ACTACCAACAGTCTCACCACTGAAAGAATGTTTGGACCAGTCCAACGATG
CAGAGCGAAACGAACAACAATCAGAGGAAATCAATTTGCCTTCAACTTCA
ACTGCAAACCCATCAGAGGAGGAAACGTTGAAAGAGATCACGTCAAATCA
GCCACCTAGAGAGGAAACCAATTCGGCTTCCACTTCAACCACAAACCAAT
CAGAGGAGGATCCATTGANTGCAGAGCGAAACGAACAACAATCAGAGGAA
ATCAATTTGCCTTCAACTTCAACTGCAAACCCATCAGAGGAGGAACCATT
GAAAGAGATCGCGTCAAATCAGCCACCTAGAGAGGAAACCAATTCGGCTT
CCACTTCAACCACAAACCAATCAGAGGAGGATCCATCGAAAGACGTCACG
TCATATCAGCCACCGAGAAAGGAAACCAGTTCGCCTTCCACATCAACCGC
AAACCAATCAGAGGAAGATCCATTGTTAGAGATTACGTCATATCAGCCAC
CGAGAGAGGAAACCAATTCGCCTTCCACATCAACCGCAAACCAATCAGAG
GAAGATCCATTGTTAGAGATCACGTCATATCAGCCACCGAGAGAGGAAAC
CAATTCGCCTTCCACATCAACCGCAAACCAATCAGAGGAAGATCCATTGT
TAGAGATCACGTCATATCAGCCACCGAGAGGGGAAACCAATTCGCCTTCC
ACATCAACCGCAAACCAATCAGAGGAAGATCCATTGTTAGAGATCACGTC
ATATCAGCCACCGAGAGAGGACCAAACCAGCGGCAACGAGAATTCCGATG
CGAATTGTACTGTCAACCCTTCTCCTCCTACTATCCCTCCATCACCTGTA
GAGCAACCAGACAGAATTTCTGAAACATCAATATCTGACTTGAGTGAGCA
AGAAACTACACCCTCCATCGAAAAGTCTTCTTCGCAAGGGGCAACCATAC
CAAGAAGAAGACTCAGTCTGAAACGGTGTTGCAATGCTGCAACTGCAACT
GTCGTCACCAGTGGCAGTGAGACCGAAACAACAAAAAGAGCAAGATCAAA
ATCGGATTCAATTGAATTCGACATCGACAGAGTTCTTCCCGAGGGTAAAG
AAGTAGTCGACATATCATCTGGAGAAACATCTTCTGAAGATTTTTGAACA
aaagtttcattccattttgTAAATCGTGTTANAACATATCATCTGGAGAA
ACATCTTCTGAAGATTTTTGAACgaaagtttcattccattttgTAAATCG
TGTTATTTTATtattcgaaaaaagaaaaagttaactCAAGC Run BLAST on NCBI transcript from alignment at scaffold_356:39641..42229- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061344 ID=TCONS_00061344|Name=TCONS_00061344|organism=Clytia hemisphaerica|type=transcript|length=2589bp|location=Sequence derived from alignment at scaffold_356:39641..42229- (Clytia hemisphaerica)
GGATGAGTGGACGCCAGACAGCCTCTCTTGTGAAGACGCCAAACGAGTTC
TCCAGGGTGAGCGGTACTTTTCTTTTTTTGTAGTTTCCTCGTCTCTTCAT
CACTTTCCTTGTGGTCTTGCCCTACCTTTTTGATTCTGCGCGTTCGAGGC
CTTTAAGCTAGTACGCAGAATTTCATTTGTCTCGTTTACTAGAGTTTACT
CAAGTTTAATTTGTCTCTTTTTTTTCTTCTAATGTATAATGGCACTTTTT
CCTTCTTTGATCTTCAGGTGGCATGAACTTCCTTCCTCAAAAGCACAAGG
AAGGCCTGAGAGTCAATTATAATTCAGGATTTTTCATTACCACTAACGTA
TACCCAGACTTTGGCAATGAAATTGACAATGACAATGAAGCGATTCGAAA
GCGGCTTGACGTGTTCCAGACATCTTCCCTTAAGCGAAAAGACCCTTCGG
TCGAAGGTGAGCTAATTATTGATCATATTTACAATCGACATATCCACCAA
AACATTAAGCCTCTTTTTGCGCCTTCACAGTCAGCTAAGTAATGAAAACA
AAGTATCTAATAAGGATATCATCGCTGCTTCAATAAAACTTTTATCGTCC
CATTCTTTCACCGACTATATGTTCATAATTGTCGTTTTTTCAGGCTGGCT
CCGTATCAACTGCATGGAGGTGTTCCATTACTTGGCCGAACAACTCAAAC
ACGAACCAATCTTCGACACACCAACACACAGATGGAATGGTGCGGGTGCT
GCCAAAGGGATGGGAGCTGTCTTCAACGATTTTGATTTCAGTCCGATGGA
TTTGATGTTGGCAGACGAAAACGCGGAGTTTTCTTTGAGCCAGACCCCAA
GCATCCCGTCCAACAATGTCCAGACAGCAGATGCAGACGTGCCATCATCG
CCAAGCAACTCAAAAGACAGTGCAACAGTCGAAGCAATTGATCACGCGAT
CATGGAAGCAGACCGTGTTGAAGGCGTGTTATACGAAGATCTCTCTTGGG
ACACGCCACTTTTCGACAACGCATCGGAAAAGTGTGACGAAGAGTACGTG
CAAAAGGTGGTCGAGCTTGCATCAAACAACGAAGGATGTTGGGACGCTCT
GCACATCTCTGACAAGGCAGTGTCAATGTTCCGGCGCCGAGCTCGCGTGT
TCTGGGATGGCCCTGACACAGTATACGATGCGTGGCTGGTACGCAAGGGT
TACGAACGACCATGGTTCGATTACCACCTCATGAATTGCTCGTTTCCAAG
CTTCGATCCTGAAGCCGAACAAGAGCCCTCAACGCCACAACAGCTCCAAC
TACCAACAGTCTCACCACTGAAAGAATGTTTGGACCAGTCCAACGATGCA
GAGCGAAACGAACAACAATCAGAGGAAATCAATTTGCCTTCAACTTCAAC
TGCAAACCCATCAGAGGAGGAAACGTTGAAAGAGATCACGTCAAATCAGC
CACCTAGAGAGGAAACCAATTCGGCTTCCACTTCAACCACAAACCAATCA
GAGGAGGATCCATTGANTGCAGAGCGAAACGAACAACAATCAGAGGAAAT
CAATTTGCCTTCAACTTCAACTGCAAACCCATCAGAGGAGGAACCATTGA
AAGAGATCGCGTCAAATCAGCCACCTAGAGAGGAAACCAATTCGGCTTCC
ACTTCAACCACAAACCAATCAGAGGAGGATCCATCGAAAGACGTCACGTC
ATATCAGCCACCGAGAAAGGAAACCAGTTCGCCTTCCACATCAACCGCAA
ACCAATCAGAGGAAGATCCATTGTTAGAGATTACGTCATATCAGCCACCG
AGAGAGGAAACCAATTCGCCTTCCACATCAACCGCAAACCAATCAGAGGA
AGATCCATTGTTAGAGATCACGTCATATCAGCCACCGAGAGAGGAAACCA
ATTCGCCTTCCACATCAACCGCAAACCAATCAGAGGAAGATCCATTGTTA
GAGATCACGTCATATCAGCCACCGAGAGGGGAAACCAATTCGCCTTCCAC
ATCAACCGCAAACCAATCAGAGGAAGATCCATTGTTAGAGATCACGTCAT
ATCAGCCACCGAGAGAGGACCAAACCAGCGGCAACGAGAATTCCGATGCG
AATTGTACTGTCAACCCTTCTCCTCCTACTATCCCTCCATCACCTGTAGA
GCAACCAGACAGAATTTCTGAAACATCAATATCTGACTTGAGTGAGCAAG
AAACTACACCCTCCATCGAAAAGTCTTCTTCGCAAGGGGCAACCATACCA
AGAAGAAGACTCAGTCTGAAACGGTGTTGCAATGCTGCAACTGCAACTGT
CGTCACCAGTGGCAGTGAGACCGAAACAACAAAAAGAGCAAGATCAAAAT
CGGATTCAATTGAATTCGACATCGACAGAGTTCTTCCCGAGGGTAAAGAA
GTAGTCGACATATCATCTGGAGAAACATCTTCTGAAGATTTTTGAACAAA
AGTTTCATTCCATTTTGTAAATCGTGTTANAACATATCATCTGGAGAAAC
ATCTTCTGAAGATTTTTGAACGAAAGTTTCATTCCATTTTGTAAATCGTG
TTATTTTATTATTCGAAAAAAGAAAAAGTTAACTCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061344-exon-scaffold_356-1575043694:42174..42229 | TCONS_00061344-exon-scaffold_356-1575043694:42174..42229 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1575043694:41774..41962 | TCONS_00061344-exon-scaffold_356-1575043694:41774..41962 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1575043694:39641..41586 | TCONS_00061344-exon-scaffold_356-1575043694:39641..41586 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1510915933:42174..42229 | TCONS_00061344-exon-scaffold_356-1510915933:42174..42229 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1510915933:41774..41962 | TCONS_00061344-exon-scaffold_356-1510915933:41774..41962 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1510915933:39641..41586 | TCONS_00061344-exon-scaffold_356-1510915933:39641..41586 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1491911889:42174..42229 | TCONS_00061344-exon-scaffold_356-1491911889:42174..42229 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1491911889:41774..41962 | TCONS_00061344-exon-scaffold_356-1491911889:41774..41962 | Clytia hemisphaerica | exon |
| TCONS_00061344-exon-scaffold_356-1491911889:39641..41586 | TCONS_00061344-exon-scaffold_356-1491911889:39641..41586 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_356 | supercontig | scaffold_356:39641..42229 - |
Blast
The following BLAST results are available for this feature:
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