|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061343 ID=TCONS_00061343|Name=TCONS_00061343|organism=Clytia hemisphaerica|type=transcript|length=471bp
AGATAATTATTCTTCTTAAACAATGGCAAACACGATATTTTCGGTGCTGG
CTTTTATATTATGTTGTATGACGGTGACGTATGGTGAATCTCACTGGCAA
AAAATGGCCAAGAAATTCGCTGAAGTATTAAACGATGGCTCTGGATGCAA
GGATAGATACGAAGTTGGTCGTTGTCAATCTTACATGCACAATGGTTGGT
GTGAGAAGTATCCCAAAGTACGAGCAGCTTGTAAAGCCACATGCGTCTGT
AATCGAGTCTTGGTTGAGGAGAAAGCACAAGGAATAGAAACAGAGATTGT
CGATTGCCAGGATAACGCCAGATATGAAGTTTTATGTGAACGATTTGGTG
GTGATTGTTCAACATCAGGAAGTTTGGGAAAATCGTTGAGAAGACATTGT
CCAAGAACATGTGATTTGTGCTGTAAGTACCTTTGACTCTATTTCTTTct
aattcttcattttcttctaat Run BLAST on NCBI protein sequence of TCONS_00061343-protein >TCONS_00061343-protein ID=TCONS_00061343-protein|Name=TCONS_00061343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MANTIFSVLAFILCCMTVTYGESHWQKMAKKFAEVLNDGSGCKDRYEVGR
CQSYMHNGWCEKYPKVRAACKATCVCNRVLVEEKAQGIETEIVDCQDNAR
YEVLCERFGGDCSTSGSLGKSLRRHCPRTCDLCCKYL Run BLAST on NCBI transcript from alignment at scaffold_356:153267..154794+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061343 ID=TCONS_00061343|Name=TCONS_00061343|organism=Clytia hemisphaerica|type=transcript|length=1528bp|location=Sequence derived from alignment at scaffold_356:153267..154794+ (Clytia hemisphaerica)
AGATAATTATTCTTCTTAAACAATGGCAAACACGATATTTTCGGTGCTGG
CTTTTATATTATGTTGTATGACGGTGACGTATGGTGAATCTCACTGGCAA
AAAATGGCCAAGAAATTCGCTGAAGTATTAAACGATGGTAAGGTTTACTT
TCAGGTGGTAGTTACccgaaattgaaaaattaccgaaaaatttattgatt
tttgttttttgggtgttttcaaATCTACAACCCTTCCTGAGAATGCCCAA
GTCATATCTCATGTATTTGGGTCACAGCAAGCATTTTTGTGTACCAGGTA
GTCGAAAACCCCCTAGCAACCAAATTTTAATTGGTTGCCATGGTCTTATC
GGTCAATATACTTGTGGCGTAGCAAAATAGCACgataaagaaaacttttt
taataaaattcattgaaataataTCATATCTACCATCATATCTAAATAGA
AAGAATTTCTTATTAGACACTCAAGAGTGTATCTGGTTTTAAGAGTGCAC
ACCAATCAGTGAGTGGGGCAAAATCCCGAaaactttttatcaaaaaattt
gaaaaagaaatgtgtccaaaatggggcaaaaccgcgaaaataattttttt
ccgacCACGAAAATCAATTCCTGCTGAAGTTAATTCccttaatgcaatga
aaagacTTGCTTAAGACTTATAAGAATGGagtattacacccctgtgtcac
agacccgttgggacCTCAACCACTGggaaatttagccaaatttttgtCCT
GGTGGAAAAATACCCcgaaatttcagccccattggaaaattgactttcat
ttcatcccAACTCAAAATTGAGCGTTAAAACTACACtcgaaaaccatccc
actggattttttagccTTTGAACAGTAGAATTGCTATTGGGGTTTCAata
gaatattttagaaaattttttttgctgggccagataaatttgataaaaaa
agtgaaaactaaaaatttaattttattcattatttgacgtttcggtgtct
tctttgcaccatgatcacaagtatagtaaaaaaaatcatgacaccgaaac
gtcaaataatgaataaaattaaatttttagttttcactttttttatcaga
atattttaggaatttttattcccactgagaaaaaagttccaccggggctg
taagacaggggtgtattaataGATATTTGTTTGGATCTTACCAGGCTCTG
GATGCAAGGATAGATACGAAGTTGGTCGTTGTCAATCTTACATGCACAAT
GGTTGGTGTGAGAAGTATCCCAAAGTACGAGCAGCTTGTAAAGCCACATG
CGTCTGTAATCGAGTCTTGGTTGAGGAGAAAGCACAAGGAATAGAAACAG
AGATTGTCGATTGCCAGGATAACGCCAGATATGAAGTTTTATGTGAACGA
TTTGGTGGTGATTGTTCAACATCAGGAAGTTTGGGAAAATCGTTGAGAAG
ACATTGTCCAAGAACATGTGATTTGTGCTGTAAGTACCTTTGACTCTATT
TCTTTctaattcttcattttcttctaat Coding sequence (CDS) from alignment at scaffold_356:153267..154794+ >TCONS_00061343 ID=TCONS_00061343|Name=TCONS_00061343|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_356:153267..154794+ (Clytia hemisphaerica)
ATGGCAAACACGATATTTTCGGTGCTGGCTTTTATATTATGTTGTATGAC
GGTGACGTATGGTGAATCTCACTGGCAAAAAATGGCCAAGAAATTCGCTG
AAGTATTAAACGATGGCTCTGGATGCAAGGATAGATACGAAGTTGGTCGT
TGTCAATCTTACATGCACAATGGTTGGTGTGAGAAGTATCCCAAAGTACG
AGCAGCTTGTAAAGCCACATGCGTCTGTAATCGAGTCTTGGTTGAGGAGA
AAGCACAAGGAATAGAAACAGAGATTGTCGATTGCCAGGATAACGCCAGA
TATGAAGTTTTATGTGAACGATTTGGTGGTGATTGTTCAACATCAGGAAG
TTTGGGAAAATCGTTGAGAAGACATTGTCCAAGAACATGTGATTTGTGCT
GTAAGTACCTTTGAATGGCAAACACGATATTTTCGGTGCTGGCTTTTATA
TTATGTTGTATGACGGTGACGTATGGTGAATCTCACTGGCAAAAAATGGC
CAAGAAATTCGCTGAAGTATTAAACGATGGCTCTGGATGCAAGGATAGAT
ACGAAGTTGGTCGTTGTCAATCTTACATGCACAATGGTTGGTGTGAGAAG
TATCCCAAAGTACGAGCAGCTTGTAAAGCCACATGCGTCTGTAATCGAGT
CTTGGTTGAGGAGAAAGCACAAGGAATAGAAACAGAGATTGTCGATTGCC
AGGATAACGCCAGATATGAAGTTTTATGTGAACGATTTGGTGGTGATTGT
TCAACATCAGGAAGTTTGGGAAAATCGTTGAGAAGACATTGTCCAAGAAC
ATGTGATTTGTGCTGTAAGTACCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061343-exon-scaffold_356-1491911889:153267..153403 | TCONS_00061343-exon-scaffold_356-1491911889:153267..153403 | Clytia hemisphaerica | exon |
| TCONS_00061343-exon-scaffold_356-1510915933:153267..153403 | TCONS_00061343-exon-scaffold_356-1510915933:153267..153403 | Clytia hemisphaerica | exon |
| TCONS_00061343-exon-scaffold_356-1575043694:153267..153403 | TCONS_00061343-exon-scaffold_356-1575043694:153267..153403 | Clytia hemisphaerica | exon |
| TCONS_00061343-exon-scaffold_356-1491911889:154461..154794 | TCONS_00061343-exon-scaffold_356-1491911889:154461..154794 | Clytia hemisphaerica | exon |
| TCONS_00061343-exon-scaffold_356-1510915933:154461..154794 | TCONS_00061343-exon-scaffold_356-1510915933:154461..154794 | Clytia hemisphaerica | exon |
| TCONS_00061343-exon-scaffold_356-1575043694:154461..154794 | TCONS_00061343-exon-scaffold_356-1575043694:154461..154794 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_356 | supercontig | scaffold_356:153267..154794 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003582 | ShKT_dom |
Blast
The following BLAST results are available for this feature:
|
