TCONS_00061329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061329
Unique NameTCONS_00061329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061329 ID=TCONS_00061329|Name=TCONS_00061329|organism=Clytia hemisphaerica|type=transcript|length=705bp
NNCGTCTATACTTTCGAACATCACCGGGTCGACAAAAGGCTTTGGACCAT
GGATCAAAACGGATTCGTCTGCTTCTTGTGCTTCTGGGTGTTTTGATTTC
AAACTGTCGATTACATCTTTCGATAGGTTAAGCACACCGCATCCTTCTTG
TTTATCGAGCATTTTCAGAGCAGCGTTGATTTTGCCCATGAAAACGAGTT
TTGcgaatgtctttgaaaattgtgCATCACGTTGTTTGCTGGGAAACATC
TTGAGAGCTTTTTGGATGGTTCGTGACTCTCTCATTAGTGCGTCAAAATC
ACCCTCGTCCCATAACCGAAATCTTCTTTCCAGACATAAACTGTGTTGCT
TAGCGGTTGATTTGTAGCTGGGTTTCTGGAGAAGCAGTGCGGGCATGACC
ATTACGACGGTGAGGGCAATATTCTTGTACGACTCGGAATCATCGACCCA
TCGCTGCAGCCATTTGGTTGTTTCGCCGACAAACCTCTTTCCATTTGCAC
CACTCGGGACGAGAAAGATGTTTCGTCTCCAAAGCACGATTTCACTATAC
ATGGCTCGGAATATTTGATAGATGTCTTCCTTGGCGTGGTTTCCCCATAT
ATGGTTTATTTGAAGCGCTGAGAAATTGATCCGTTATCAGATTATGTTAT
TTTAGttattacgtaatgttttcgcTGCTAATTTGGGTAATAAGATTCAT
CAAAC
Run BLAST on NCBI

protein sequence of TCONS_00061329-protein

>TCONS_00061329-protein ID=TCONS_00061329-protein|Name=TCONS_00061329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MYSEIVLWRRNIFLVPSGANGKRFVGETTKWLQRWVDDSESYKNIALTVV
MVMPALLLQKPSYKSTAKQHSLCLERRFRLWDEGDFDALMRESRTIQKAL
KMFPSKQRDAQFSKTFAKLVFMGKINAALKMLDKQEGCGVLNLSKDVIDS
LKSKHPEAQEADESVLIHGPKPFVDPVMFESIDX
Run BLAST on NCBI

transcript from alignment at scaffold_355:339938..340642

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061329 ID=TCONS_00061329|Name=TCONS_00061329|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at scaffold_355:339938..340642 (Clytia hemisphaerica)
GTTTGATGAATCTTATTACCCAAATTAGCAgcgaaaacattacgtaataa
CTAAAATAACATAATCTGATAACGGATCAATTTCTCAGCGCTTCAAATAA
ACCATATATGGGGAAACCACGCCAAGGAAGACATCTATCAAATATTCCGA
GCCATGTATAGTGAAATCGTGCTTTGGAGACGAAACATCTTTCTCGTCCC
GAGTGGTGCAAATGGAAAGAGGTTTGTCGGCGAAACAACCAAATGGCTGC
AGCGATGGGTCGATGATTCCGAGTCGTACAAGAATATTGCCCTCACCGTC
GTAATGGTCATGCCCGCACTGCTTCTCCAGAAACCCAGCTACAAATCAAC
CGCTAAGCAACACAGTTTATGTCTGGAAAGAAGATTTCGGTTATGGGACG
AGGGTGATTTTGACGCACTAATGAGAGAGTCACGAACCATCCAAAAAGCT
CTCAAGATGTTTCCCAGCAAACAACGTGATGcacaattttcaaagacatt
cgCAAAACTCGTTTTCATGGGCAAAATCAACGCTGCTCTGAAAATGCTCG
ATAAACAAGAAGGATGCGGTGTGCTTAACCTATCGAAAGATGTAATCGAC
AGTTTGAAATCAAAACACCCAGAAGCACAAGAAGCAGACGAATCCGTTTT
GATCCATGGTCCAAAGCCTTTTGTCGACCCGGTGATGTTCGAAAGTATAG
ACGNN

Coding sequence (CDS) from alignment at scaffold_355:339938..340642

>TCONS_00061329 ID=TCONS_00061329|Name=TCONS_00061329|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_355:339938..340642 (Clytia hemisphaerica)
ATGTATAGTGAAATCGTGCTTTGGAGACGAAACATCTTTCTCGTCCCGAG
TGGTGCAAATGGAAAGAGGTTTGTCGGCGAAACAACCAAATGGCTGCAGC
GATGGGTCGATGATTCCGAGTCGTACAAGAATATTGCCCTCACCGTCGTA
ATGGTCATGCCCGCACTGCTTCTCCAGAAACCCAGCTACAAATCAACCGC
TAAGCAACACAGTTTATGTCTGGAAAGAAGATTTCGGTTATGGGACGAGG
GTGATTTTGACGCACTAATGAGAGAGTCACGAACCATCCAAAAAGCTCTC
AAGATGTTTCCCAGCAAACAACGTGATGcacaattttcaaagacattcgC
AAAACTCGTTTTCATGGGCAAAATCAACGCTGCTCTGAAAATGCTCGATA
AACAAGAAGGATGCGGTGTGCTTAACCTATCGAAAGATGTAATCGACAGT
TTGAAATCAAAACACCCAGAAGCACAAGAAGCAGACGAATCCGTTTTGAT
CCATGGTCCAAAGCCTTTTGTCGACCCGGTGATGTTCGAAAGTATAGACG
NN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038480XLOC_038480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061329-exon-scaffold_355-1491911889:339938..340642TCONS_00061329-exon-scaffold_355-1491911889:339938..340642Clytia hemisphaericaexon
TCONS_00061329-exon-scaffold_355-1510915933:339938..340642TCONS_00061329-exon-scaffold_355-1510915933:339938..340642Clytia hemisphaericaexon
TCONS_00061329-exon-scaffold_355-1575043694:339938..340642TCONS_00061329-exon-scaffold_355-1575043694:339938..340642Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061329-proteinTCONS_00061329-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:339938..340642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.24006	6.24056	5.41566	3.97392	27.6999	23.3924	28.9283	33.5736	9.05736	15.1063	13.1514	12.7475	11.5147	10.1733	9.13761	15.2329	11.6785	13.3296	7.12196	7.2393	5.96915	5.30151	4.92185	5.44791	16.2586	20.4632	5.35447	4.1163	2.59875	1.1755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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